Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Forward (+)

11569692 .. 11580730

Gene Structure 11039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG144000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGCAGCTTGCAGGAGTGCTATTAATTCTTCCTTGTTTAAGCATTGGCTGAAGAACACCAAGAGTAAAAATGGGATTATACACGGCGGTTCCAGTTCTAAGTTAGGGAGTGGATATGTGGAGGAAGCATATAGGTTTTCTGAAATTCCAAGCAGATCAATAAACAAACAGGGGAAAAGGTTGAAATGGGTAGCAAGCCATCCAACAAAACCATTTTTGAACAAAGCCGTTCTTGAATATGAACGTACTTCTCCGCATCCCAAATTCCAAAACCCTCATAATCATCCGACGGACTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

99

Amino Acids

11.16

Weight (kDa)

10.02

Isoelectric Point (pI)

48.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	87, 254
AcsI	RAATTY	2 cut(s)	144, 263
AcuI	CTGAAG	1 cut(s)	71
AfaI	GTAC	1 cut(s)	247
AgsI	TTSAA	3 cut(s)	184, 220, 236
AluBI	AGCT	1 cut(s)	8
AluI	AGCT	1 cut(s)	8
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	2 cut(s)	144, 263
AseI	ATTAAT	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	207
BceAI	ACGGC	2 cut(s)	100, 212
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BmiI	GGNNCC	1 cut(s)	91
BmsI	GCATC	1 cut(s)	265
Bse1I	ACTGG	1 cut(s)	93
BseGI	GGATG	3 cut(s)	199, 256, 283
BseNI	ACTGG	1 cut(s)	93
BseXI	GCAGC	1 cut(s)	17
Bsp143I	GATC	1 cut(s)	155
BspACI	CCGC	2 cut(s)	87, 254
BspLI	GGNNCC	1 cut(s)	91
BsrI	ACTGG	1 cut(s)	93
BssMI	GATC	1 cut(s)	155
Bst4CI	ACNGT	1 cut(s)	296
BstC8I	GCNNGC	2 cut(s)	10, 196
BstDEI	CTNAG	1 cut(s)	99
BstF5I	GGATG	3 cut(s)	199, 256, 283
BstKTI	GATC	1 cut(s)	158
BstMBI	GATC	1 cut(s)	155
BstV1I	GCAGC	1 cut(s)	17
BtsCI	GGATG	3 cut(s)	199, 256, 283
Cac8I	GCNNGC	2 cut(s)	10, 196
Csp6I	GTAC	1 cut(s)	246
CviJI	RGCY	4 cut(s)	8, 49, 198, 227
CviKI_1	RGCY	4 cut(s)	8, 49, 198, 227
CviQI	GTAC	1 cut(s)	246
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	1 cut(s)	157
DpnII	GATC	1 cut(s)	155
Eco57I	CTGAAG	1 cut(s)	71
FaiI	YATR	6 cut(s)	80, 117, 130, 132, 240, 279
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	3 cut(s)	186, 243, 270
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	142, 288
Hpy188III	TCNNGA	1 cut(s)	233
Hpy99I	CGWCG	1 cut(s)	292
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	1 cut(s)	12
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	1 cut(s)	244
Kzo9I	GATC	1 cut(s)	155
LpnPI	CCDG	2 cut(s)	106, 155
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	265
MaeII	ACGT	1 cut(s)	244
MalI	GATC	1 cut(s)	157
MboI	GATC	1 cut(s)	155
MboII	GAAGA	2 cut(s)	21, 64
MluCI	AATT	3 cut(s)	25, 144, 263
MmeI	TCCRAC	1 cut(s)	227
MnlI	CCTC	2 cut(s)	115, 285
MseI	TTAA	2 cut(s)	24, 39
NdeII	GATC	1 cut(s)	155
NlaIV	GGNNCC	1 cut(s)	91
PkrI	GCNGC	1 cut(s)	7
PshBI	ATTAAT	1 cut(s)	24
PspN4I	GGNNCC	1 cut(s)	91
RsaI	GTAC	1 cut(s)	247
RsaNI	GTAC	1 cut(s)	246
SaqAI	TTAA	2 cut(s)	24, 39
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	155
SetI	ASST	4 cut(s)	10, 137, 182, 247
SfaNI	GCATC	1 cut(s)	265
Sse9I	AATT	3 cut(s)	25, 144, 263
SsiI	CCGC	2 cut(s)	87, 254
TaaI	ACNGT	1 cut(s)	296
TaiI	ACGT	1 cut(s)	247
TasI	AATT	3 cut(s)	25, 144, 263
Tru1I	TTAA	2 cut(s)	24, 39
Tru9I	TTAA	2 cut(s)	24, 39
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	255
VspI	ATTAAT	1 cut(s)	24
XapI	RAATTY	2 cut(s)	144, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.