Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Forward (+)

54232076 .. 54240251

Gene Structure 8176 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG365900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGATAAGAAAGGATGAGTTTGATGTAGTTTTCAGGGCAACTAAAGGTAAATGGCGGGCAGTTGTAGTAGAGATTTCTAGAATGCACAAAACAATTCGCCCTGTACTTGTTGGCACAACTAGTGTTGAGCAGAGTGACTCATTGTCTGAGCAGTTGCAAGAAATTGGCATTCCCCATGAGGTTAATGAAAAGCTATTTCCATGCAAACTGTTCAATGAAAAGACCAAGTTAGCTGAGGAAGCTGTGAATTTAGCTGCTGAAACTTGGGGTCAGAGATCATTGACGGAGCTAGAAGCAGAGGAGCATATTTCTTACTCTTGCGAAAAGGGACCTGCTTTGGATGAAGTGATATATACCCCAAATCTCAATTATTCAACTCAGTGCAGGTGCTTCGTCTTCTTATTAGATATTGGATTCGAACATTGGAGATGTGGATTTGGGATTGAAGGAAAAAATGTCAAAATTGGGGCTAGGAAGGTATGGCCAAGAAATTATGGCAGTGAAGGGGAGGGTCTTGCAAGTTCCACCAGTGTTCAGGCATCGTTTGTAAGAGGTGTTCTTGAGAAAACTGGAGTTGAGCCACAAGTGGAGAGGATTAGTAAATACGAAAGTGCTGTTGTTGAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005524 GO:0006810 GO:0008104 GO:0008144 GO:0008150 GO:0008320 GO:0008565 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022804 GO:0022857 GO:0022884 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033220 GO:0035639 GO:0036094 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043167 GO:0043168 GO:0043492 GO:0045184 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071806 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SecA_DEAD SecA_PP_bind SecA_SW

Protein Analysis

209

Amino Acids

23.56

Weight (kDa)

5.54

Isoelectric Point (pI)

34.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P-loop_SecA	PF21090	1 - 61	3.9e-17	SecA P-loop domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	375
Acc36I	ACCTGC	2 cut(s)	340, 375
AciI	CCGC	1 cut(s)	55
AcoI	YGGCCR	1 cut(s)	482
AcsI	RAATTY	2 cut(s)	247, 624
AfaI	GTAC	1 cut(s)	105
AgsI	TTSAA	4 cut(s)	214, 375, 446, 623
AhdI	GACNNNNNGTC	1 cut(s)	142
AhlI	ACTAGT	1 cut(s)	119
AluBI	AGCT	5 cut(s)	193, 233, 242, 254, 289
AluI	AGCT	5 cut(s)	193, 233, 242, 254, 289
AoxI	GGCC	1 cut(s)	482
ApeKI	GCWGC	1 cut(s)	254
ApoI	RAATTY	2 cut(s)	247, 624
AspS9I	GGNCC	1 cut(s)	329
AsuII	TTCGAA	1 cut(s)	417
AvaII	GGWCC	1 cut(s)	329
BalI	TGGCCA	1 cut(s)	484
BbsI	GAAGAC	1 cut(s)	388
BbvCI	CCTCAGC	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	241
BcgI	CGANNNNNNTGC	2 cut(s)	373, 407
BcuI	ACTAGT	1 cut(s)	119
BfaI	CTAG	4 cut(s)	78, 120, 290, 471
BfuAI	ACCTGC	2 cut(s)	340, 375
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
Bme18I	GGWCC	1 cut(s)	329
BmeRI	GACNNNNNGTC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	329
BmiI	GGNNCC	1 cut(s)	330
BmsI	GCATC	1 cut(s)	548
BpiI	GAAGAC	1 cut(s)	388
BpmI	CTGGAG	1 cut(s)	591
Bpu10I	CCTNAGC	1 cut(s)	234
Bpu14I	TTCGAA	1 cut(s)	417
BpuEI	CTTGAG	1 cut(s)	581
Bse1I	ACTGG	2 cut(s)	528, 574
BseGI	GGATG	2 cut(s)	19, 346
BseMII	CTCAG	3 cut(s)	138, 225, 392
BseNI	ACTGG	2 cut(s)	528, 574
BseRI	GAGGAG	1 cut(s)	314
BseXI	GCAGC	1 cut(s)	241
BsgI	GTGCAG	1 cut(s)	403
BshFI	GGCC	1 cut(s)	484
BslFI	GGGAC	1 cut(s)	342
BsmFI	GGGAC	1 cut(s)	342
BsmI	GAATGC	2 cut(s)	87, 168
BsnI	GGCC	1 cut(s)	484
Bsp119I	TTCGAA	1 cut(s)	417
Bsp143I	GATC	1 cut(s)	275
BspACI	CCGC	1 cut(s)	55
BspANI	GGCC	1 cut(s)	484
BspCNI	CTCAG	3 cut(s)	139, 226, 391
BspLI	GGNNCC	1 cut(s)	330
BspMI	ACCTGC	2 cut(s)	340, 375
BspT104I	TTCGAA	1 cut(s)	417
BsrI	ACTGG	2 cut(s)	528, 574
BssMI	GATC	1 cut(s)	275
Bst4CI	ACNGT	1 cut(s)	210
BstBI	TTCGAA	1 cut(s)	417
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	3 cut(s)	147, 234, 378
BstF5I	GGATG	2 cut(s)	19, 346
BstKTI	GATC	1 cut(s)	278
BstMBI	GATC	1 cut(s)	275
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstV1I	GCAGC	1 cut(s)	241
BstV2I	GAAGAC	1 cut(s)	388
BsuRI	GGCC	1 cut(s)	484
BtsCI	GGATG	2 cut(s)	19, 346
BtsI	GCAGTG	1 cut(s)	505
BtsIMutI	CAGTG	3 cut(s)	386, 505, 535
BveI	ACCTGC	2 cut(s)	340, 375
Cac8I	GCNNGC	1 cut(s)	57
Cfr13I	GGNCC	1 cut(s)	329
Csp6I	GTAC	1 cut(s)	104
CviAII	CATG	2 cut(s)	176, 201
CviJI	RGCY	8 cut(s)	193, 233, 242, 254, 289, 470, 484, 580
CviKI_1	RGCY	8 cut(s)	193, 233, 242, 254, 289, 470, 484, 580
CviQI	GTAC	1 cut(s)	104
DdeI	CTNAG	3 cut(s)	147, 234, 378
DpnI	GATC	1 cut(s)	277
DpnII	GATC	1 cut(s)	275
DriI	GACNNNNNGTC	1 cut(s)	142
EaeI	YGGCCR	1 cut(s)	482
Eam1105I	GACNNNNNGTC	1 cut(s)	142
Eco47I	GGWCC	1 cut(s)	329
EcoO109I	RGGNCCY	1 cut(s)	329
FaeI	CATG	2 cut(s)	179, 204
FaiI	YATR	7 cut(s)	177, 202, 306, 352, 354, 481, 495
FaqI	GGGAC	1 cut(s)	342
FatI	CATG	2 cut(s)	175, 200
FauI	CCCGC	1 cut(s)	48
Fnu4HI	GCNGC	1 cut(s)	255
FokI	GGATG	2 cut(s)	26, 353
Fsp4HI	GCNGC	1 cut(s)	255
FspBI	CTAG	4 cut(s)	78, 120, 290, 471
GluI	GCNGC	1 cut(s)	255
GsuI	CTGGAG	1 cut(s)	591
HaeIII	GGCC	1 cut(s)	484
Hin1II	CATG	2 cut(s)	179, 204
HinfI	GANTC	2 cut(s)	137, 414
Hpy188I	TCNGA	2 cut(s)	148, 273
Hpy188III	TCNNGA	2 cut(s)	78, 560
HpyAV	CCTTC	3 cut(s)	440, 469, 497
HpyCH4III	ACNGT	1 cut(s)	210
HpyCH4V	TGCA	5 cut(s)	85, 157, 204, 384, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	3 cut(s)	147, 234, 378
Hsp92II	CATG	2 cut(s)	179, 204
Kzo9I	GATC	1 cut(s)	275
LmnI	GCTCC	2 cut(s)	286, 301
LpnPI	CCDG	7 cut(s)	19, 114, 345, 370, 521, 541, 555
Lsp1109I	GCAGC	1 cut(s)	241
LweI	GCATC	1 cut(s)	548
MaeI	CTAG	4 cut(s)	78, 120, 290, 471
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	1 cut(s)	277
MboI	GATC	1 cut(s)	275
MboII	GAAGA	1 cut(s)	388
MlsI	TGGCCA	1 cut(s)	484
MluCI	AATT	7 cut(s)	93, 162, 247, 367, 462, 490, 624
MluNI	TGGCCA	1 cut(s)	484
MlyI	GAGTC	1 cut(s)	131
MnlI	CCTC	6 cut(s)	172, 229, 292, 502, 545, 585
Mox20I	TGGCCA	1 cut(s)	484
MscI	TGGCCA	1 cut(s)	484
MseI	TTAA	1 cut(s)	183
Msp20I	TGGCCA	1 cut(s)	484
Mva1269I	GAATGC	2 cut(s)	87, 168
MwoI	GCNNNNNNNGC	1 cut(s)	239
NdeII	GATC	1 cut(s)	275
NlaIII	CATG	2 cut(s)	179, 204
NlaIV	GGNNCC	1 cut(s)	330
NmuCI	GTSAC	1 cut(s)	134
NspV	TTCGAA	1 cut(s)	417
PaqCI	CACCTGC	1 cut(s)	375
PctI	GAATGC	2 cut(s)	87, 168
PfeI	GAWTC	1 cut(s)	414
PkrI	GCNGC	1 cut(s)	256
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
PpuMI	RGGWCCY	1 cut(s)	329
Psp5II	RGGWCCY	1 cut(s)	329
PspN4I	GGNNCC	1 cut(s)	330
PspPI	GGNCC	1 cut(s)	329
PspPPI	RGGWCCY	1 cut(s)	329
PsrI	GAACNNNNNNTAC	2 cut(s)	540, 572
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	1 cut(s)	275
Sau96I	GGNCC	1 cut(s)	329
SchI	GAGTC	1 cut(s)	131
SfaNI	GCATC	1 cut(s)	548
SfuI	TTCGAA	1 cut(s)	417
SinI	GGWCC	1 cut(s)	329
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
SpeI	ACTAGT	1 cut(s)	119
Sse9I	AATT	7 cut(s)	93, 162, 247, 367, 462, 490, 624
SsiI	CCGC	1 cut(s)	55
SspMI	CTAG	4 cut(s)	78, 120, 290, 471
TaaI	ACNGT	1 cut(s)	210
TaqI	TCGA	1 cut(s)	417
TasI	AATT	7 cut(s)	93, 162, 247, 367, 462, 490, 624
TatI	WGTACW	1 cut(s)	103
TfiI	GAWTC	1 cut(s)	414
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	3 cut(s)	386, 505, 535
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	3 cut(s)	201, 231, 357
TspGWI	ACGGA	1 cut(s)	299
TspRI	CASTG	3 cut(s)	386, 505, 535
VpaK11BI	GGWCC	1 cut(s)	329
XapI	RAATTY	2 cut(s)	247, 624
XbaI	TCTAGA	1 cut(s)	77
XspI	CTAG	4 cut(s)	78, 120, 290, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.