Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Reverse (-)

42630876 .. 42635017

Gene Structure 4142 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002981

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCATCCTGCAGGAGTGCTATCGATACTTCCTTGTTTAAGCAGTGGCTGAAGAACACCCAGAGTGAAAATGGGATTTTACACGGCAGTTCCATGTCTCTTACACGAGTTGTAATTCAGTCAGTGGAGATGACGTATGCTGTTTTTACTGAGCAGTTGCCTGCTGGAATGTTGGATGTTGACAAGGGTGATTTTCTTGGAGCTGCAATCCGTGAGTCTGATGTAGTTTTCAAGGAAACTAAAGGTAAATGGCGGGCAGTTGTAGTAGAGATTTCTAGAATGCACAAAACAGGCCGCCCTGTACTTGTTGGCACAACTAATGTTGAGCAGAGTGACTCATTGTCTGAGCAGTTGCAAGAAGTTGGCATTCCCCATGAGACCAAGTTAGCTGAGGAAGCTGTGAATTTAGCTGCTGAAACTTGGGGTCAGAAATCATTGACGGAGCTAGAAGCAAAGGAGCGTCTTTCTTACTCTTGCGAAAAGGTGCTTCGTCTTCTTAAGTTCTTATTAGTGTGTCAAAATTTGACTTCTCTAGATTACTTGGGCATTTTTCAGTGTCTCATGAAGAGGTGCGCATTAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005524 GO:0006810 GO:0008104 GO:0008144 GO:0008150 GO:0008320 GO:0008565 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022804 GO:0022857 GO:0022884 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033220 GO:0035639 GO:0036094 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043167 GO:0043168 GO:0043492 GO:0045184 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071806 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SecA_DEAD SecA_PP_bind SecA_SW

Protein Analysis

195

Amino Acids

21.66

Weight (kDa)

6.33

Isoelectric Point (pI)

41.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P-loop_SecA	PF21090	72 - 128	7.1e-15	SecA P-loop domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	574
AciI	CCGC	2 cut(s)	253, 295
AcsI	RAATTY	2 cut(s)	403, 520
AcuI	CTGAAG	1 cut(s)	71
AfaI	GTAC	1 cut(s)	303
AflII	CTTAAG	1 cut(s)	497
AgsI	TTSAA	1 cut(s)	232
AhdI	GACNNNNNGTC	1 cut(s)	340
AluBI	AGCT	5 cut(s)	203, 389, 398, 410, 445
AluI	AGCT	5 cut(s)	203, 389, 398, 410, 445
Alw26I	GTCTC	3 cut(s)	102, 371, 563
AlwNI	CAGNNNCTG	1 cut(s)	49
AoxI	GGCC	1 cut(s)	292
ApeKI	GCWGC	2 cut(s)	203, 410
ApoI	RAATTY	2 cut(s)	403, 520
AspLEI	GCGC	1 cut(s)	575
AsuHPI	GGTGA	1 cut(s)	200
BauI	CACGAG	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	485
BbvCI	CCTCAGC	1 cut(s)	390
BbvI	GCAGC	2 cut(s)	190, 397
BceAI	ACGGC	1 cut(s)	100
BcoDI	GTCTC	3 cut(s)	102, 371, 563
BfaI	CTAG	3 cut(s)	276, 446, 533
BfmI	CTRYAG	1 cut(s)	10
BfrI	CTTAAG	1 cut(s)	497
BisI	GCNGC	3 cut(s)	204, 295, 411
BlsI	GCNGC	3 cut(s)	205, 296, 412
BmeRI	GACNNNNNGTC	1 cut(s)	340
BmsI	GCATC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	485
Bpu10I	CCTNAGC	1 cut(s)	390
Bsa29I	ATCGAT	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	371
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
BseCI	ATCGAT	1 cut(s)	24
BseGI	GGATG	2 cut(s)	5, 181
BseMII	CTCAG	3 cut(s)	141, 336, 381
BseXI	GCAGC	2 cut(s)	190, 397
BshFI	GGCC	1 cut(s)	294
BshVI	ATCGAT	1 cut(s)	24
BsmAI	GTCTC	3 cut(s)	102, 371, 563
BsmI	GAATGC	2 cut(s)	285, 366
BsnI	GGCC	1 cut(s)	294
Bso31I	GGTCTC	1 cut(s)	371
BspACI	CCGC	2 cut(s)	253, 295
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	3 cut(s)	142, 337, 382
BspDI	ATCGAT	1 cut(s)	24
BspHI	TCATGA	1 cut(s)	561
BspMAI	CTGCAG	1 cut(s)	14
BspTI	CTTAAG	1 cut(s)	497
BspTNI	GGTCTC	1 cut(s)	371
BssSI	CACGAG	1 cut(s)	105
Bst2BI	CACGAG	1 cut(s)	105
Bst6I	CTCTTC	1 cut(s)	560
BstAFI	CTTAAG	1 cut(s)	497
BstC8I	GCNNGC	2 cut(s)	162, 255
BstDEI	CTNAG	3 cut(s)	150, 345, 390
BstF5I	GGATG	2 cut(s)	5, 181
BstHHI	GCGC	1 cut(s)	575
BstMAI	GTCTC	3 cut(s)	102, 371, 563
BstMWI	GCNNNNNNNGC	1 cut(s)	395
BstSFI	CTRYAG	1 cut(s)	10
BstV1I	GCAGC	2 cut(s)	190, 397
BstV2I	GAAGAC	1 cut(s)	485
Bsu15I	ATCGAT	1 cut(s)	24
BsuRI	GGCC	1 cut(s)	294
BsuTUI	ATCGAT	1 cut(s)	24
BtsCI	GGATG	2 cut(s)	5, 181
BtsI	GCAGTG	1 cut(s)	50
BtsIMutI	CAGTG	3 cut(s)	50, 129, 560
Cac8I	GCNNGC	2 cut(s)	162, 255
CaiI	CAGNNNCTG	1 cut(s)	49
CciI	TCATGA	1 cut(s)	561
CfoI	GCGC	1 cut(s)	575
ClaI	ATCGAT	1 cut(s)	24
CseI	GACGC	1 cut(s)	449
Csp6I	GTAC	1 cut(s)	302
CviAII	CATG	3 cut(s)	94, 374, 562
CviJI	RGCY	7 cut(s)	49, 203, 294, 389, 398, 410, 445
CviKI_1	RGCY	7 cut(s)	49, 203, 294, 389, 398, 410, 445
CviQI	GTAC	1 cut(s)	302
DdeI	CTNAG	3 cut(s)	150, 345, 390
DriI	GACNNNNNGTC	1 cut(s)	340
Eam1104I	CTCTTC	1 cut(s)	560
Eam1105I	GACNNNNNGTC	1 cut(s)	340
EarI	CTCTTC	1 cut(s)	560
Eco31I	GGTCTC	1 cut(s)	371
Eco57I	CTGAAG	1 cut(s)	71
FaeI	CATG	3 cut(s)	97, 377, 565
FaiI	YATR	4 cut(s)	95, 138, 375, 563
FatI	CATG	3 cut(s)	93, 373, 561
FauI	CCCGC	1 cut(s)	246
Fnu4HI	GCNGC	3 cut(s)	204, 295, 411
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	3 cut(s)	204, 295, 411
FspAI	RTGCGCAY	1 cut(s)	574
FspBI	CTAG	3 cut(s)	276, 446, 533
FspI	TGCGCA	1 cut(s)	574
GlaI	GCGC	1 cut(s)	574
GluI	GCNGC	3 cut(s)	204, 295, 411
HaeIII	GGCC	1 cut(s)	294
HgaI	GACGC	1 cut(s)	449
HhaI	GCGC	1 cut(s)	575
Hin1II	CATG	3 cut(s)	97, 377, 565
Hin6I	GCGC	1 cut(s)	573
HinP1I	GCGC	1 cut(s)	573
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	2 cut(s)	215, 335
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	3 cut(s)	220, 346, 429
Hpy188III	TCNNGA	3 cut(s)	276, 533, 562
Hpy8I	GTNNAC	1 cut(s)	181
HpyCH4IV	ACGT	1 cut(s)	134
HpyCH4V	TGCA	4 cut(s)	12, 206, 283, 355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	395
HpyF3I	CTNAG	3 cut(s)	150, 345, 390
HpySE526I	ACGT	1 cut(s)	134
Hsp92II	CATG	3 cut(s)	97, 377, 565
HspAI	GCGC	1 cut(s)	573
LmnI	GCTCC	3 cut(s)	200, 442, 457
LpnPI	CCDG	6 cut(s)	22, 74, 150, 174, 276, 312
Lsp1109I	GCAGC	2 cut(s)	190, 397
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	3 cut(s)	276, 446, 533
MaeII	ACGT	1 cut(s)	134
MaeIII	GTNAC	1 cut(s)	332
MboII	GAAGA	3 cut(s)	64, 485, 577
MluCI	AATT	3 cut(s)	114, 403, 520
MlyI	GAGTC	2 cut(s)	224, 329
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	2 cut(s)	385, 561
MseI	TTAA	3 cut(s)	39, 498, 578
MspCI	CTTAAG	1 cut(s)	497
Mva1269I	GAATGC	2 cut(s)	285, 366
MwoI	GCNNNNNNNGC	1 cut(s)	395
NlaIII	CATG	3 cut(s)	97, 377, 565
NmuCI	GTSAC	1 cut(s)	332
NsbI	TGCGCA	1 cut(s)	574
PagI	TCATGA	1 cut(s)	561
PctI	GAATGC	2 cut(s)	285, 366
PkrI	GCNGC	3 cut(s)	205, 296, 412
PleI	GAGTC	2 cut(s)	223, 329
PpsI	GAGTC	2 cut(s)	223, 329
PstI	CTGCAG	1 cut(s)	14
PstNI	CAGNNNCTG	1 cut(s)	49
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
SaqAI	TTAA	3 cut(s)	39, 498, 578
SatI	GCNGC	3 cut(s)	204, 295, 411
SbfI	CCTGCAGG	1 cut(s)	14
SchI	GAGTC	2 cut(s)	224, 329
SdaI	CCTGCAGG	1 cut(s)	14
SetI	ASST	9 cut(s)	137, 205, 247, 391, 400, 412, 447, 486, 572
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	10
SmlI	CTYRAG	1 cut(s)	497
SmoI	CTYRAG	1 cut(s)	497
Sse8387I	CCTGCAGG	1 cut(s)	14
Sse9I	AATT	3 cut(s)	114, 403, 520
SsiI	CCGC	2 cut(s)	253, 295
SspMI	CTAG	3 cut(s)	276, 446, 533
TaiI	ACGT	1 cut(s)	137
TaqI	TCGA	1 cut(s)	24
TasI	AATT	3 cut(s)	114, 403, 520
TatI	WGTACW	1 cut(s)	301
TauI	GCSGC	1 cut(s)	297
Tru1I	TTAA	3 cut(s)	39, 498, 578
Tru9I	TTAA	3 cut(s)	39, 498, 578
TscAI	CASTG	3 cut(s)	50, 129, 560
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	2 cut(s)	203, 410
Tsp45I	GTSAC	1 cut(s)	332
TspDTI	ATGAA	1 cut(s)	578
TspGWI	ACGGA	2 cut(s)	200, 455
TspRI	CASTG	3 cut(s)	50, 129, 560
Vha464I	CTTAAG	1 cut(s)	497
XapI	RAATTY	2 cut(s)	403, 520
XbaI	TCTAGA	2 cut(s)	275, 532
XcmI	CCANNNNNNNNNTGG	1 cut(s)	68
XspI	CTAG	3 cut(s)	276, 446, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.