Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006398.1

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Reverse (-)

50768 .. 52379

Gene Structure 1612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006398.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atgtttgaaaagaggattgggtttctgaagtttgaagccgatgtggttgataaagaaacagggaaaaaggttccaggtattgtgtttgcacgcggaccggctgtagctgtgcttatacttttggaatcggagggcaaggcttatgctgttcttactgaacaggttagagtacctgttggaaggatcatactggagttgcctgctggaatgttggatgatgacaagggtgattttctcggcaccgcaatccgtgagctaagtattcttattataacactccaggtggaagaagagactggcatatgcctaaaacaagaagccatggtggacctcacagccttcctcgaccaatctactggatgcggaatatttccttctcctggagggtgtgatgaagaactcagcctctatctgtacagagggcaggtggataaagagattattgatcagctgcaaggtaaagaaacaggtcttcgtgaccatggagagctgattagggtttgtgtgctcccttatgaaaagctctggcgcatgacagctgatgcaaaggttttaacagccgttgcactctatgaaatggcaaaaagagaagggctcttgcctcccctgaaaacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019144 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0080041 GO:0080042

KEGG Pathways

Metabolic & Signaling

ko00051 ko00230 ko00500 ko01100 ko01110 map00051 map00230 map00500 map01100 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

205

Amino Acids

22.6

Weight (kDa)

4.81

Isoelectric Point (pI)

33.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	272
AarI	CACCTGC	1 cut(s)	415
Acc36I	ACCTGC	1 cut(s)	415
AccB1I	GGYRCC	1 cut(s)	239
AccII	CGCG	1 cut(s)	93
AciI	CCGC	3 cut(s)	93, 243, 363
AclWI	GGATC	1 cut(s)	191
AcuI	CTGAAG	1 cut(s)	47
AfaI	GTAC	2 cut(s)	171, 416
AfiI	CCNNNNNNNGG	1 cut(s)	380
AgsI	TTSAA	2 cut(s)	8, 35
AjnI	CCWGG	3 cut(s)	73, 279, 379
AjuI	GAANNNNNNNTTGG	1 cut(s)	32
AluBI	AGCT	6 cut(s)	107, 256, 451, 490, 523, 539
AluI	AGCT	6 cut(s)	107, 256, 451, 490, 523, 539
Alw21I	GWGCWC	1 cut(s)	510
Alw26I	GTCTC	1 cut(s)	287
AlwI	GGATC	1 cut(s)	191
ApeKI	GCWGC	1 cut(s)	451
AspLEI	GCGC	1 cut(s)	531
AspS9I	GGNCC	2 cut(s)	95, 328
AsuHPI	GGTGA	1 cut(s)	239
AvaII	GGWCC	2 cut(s)	95, 328
BanI	GGYRCC	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	597
BbsI	GAAGAC	1 cut(s)	464
Bbv12I	GWGCWC	1 cut(s)	510
BbvI	GCAGC	1 cut(s)	438
BceAI	ACGGC	1 cut(s)	545
BciT130I	CCWGG	3 cut(s)	75, 281, 381
BclI	TGATCA	1 cut(s)	445
BcoDI	GTCTC	1 cut(s)	287
BfmI	CTRYAG	1 cut(s)	102
BfuAI	ACCTGC	1 cut(s)	415
BisI	GCNGC	1 cut(s)	452
BlsI	GCNGC	1 cut(s)	453
Bme1390I	CCNGG	3 cut(s)	75, 281, 381
Bme18I	GGWCC	2 cut(s)	95, 328
BmgT120I	GGNCC	2 cut(s)	95, 328
BmiI	GGNNCC	2 cut(s)	72, 241
BmrFI	CCNGG	3 cut(s)	75, 281, 381
BmsI	GCATC	2 cut(s)	350, 532
BpiI	GAAGAC	1 cut(s)	464
BplI	GAGNNNNNCTC	2 cut(s)	579, 611
BpmI	CTGGAG	3 cut(s)	212, 263, 402
BsaJI	CCNNGG	2 cut(s)	321, 481
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
Bse118I	RCCGGY	1 cut(s)	97
Bse1I	ACTGG	3 cut(s)	195, 301, 361
BseBI	CCWGG	3 cut(s)	75, 281, 381
BseDI	CCNNGG	2 cut(s)	321, 481
BseGI	GGATG	2 cut(s)	220, 365
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseMII	CTCAG	1 cut(s)	415
BseNI	ACTGG	3 cut(s)	195, 301, 361
BseXI	GCAGC	1 cut(s)	438
Bsh1236I	CGCG	1 cut(s)	93
BshNI	GGYRCC	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	510
BsiSI	CCGG	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	380
BsmAI	GTCTC	1 cut(s)	287
Bsp1286I	GDGCHC	2 cut(s)	510, 597
Bsp1407I	TGTACA	1 cut(s)	414
Bsp143I	GATC	2 cut(s)	183, 445
Bsp19I	CCATGG	2 cut(s)	321, 481
BspACI	CCGC	3 cut(s)	93, 243, 363
BspCNI	CTCAG	1 cut(s)	414
BspFNI	CGCG	1 cut(s)	93
BspLI	GGNNCC	2 cut(s)	72, 241
BspMI	ACCTGC	1 cut(s)	415
BspPI	GGATC	1 cut(s)	191
BspT107I	GGYRCC	1 cut(s)	239
BsrFI	RCCGGY	1 cut(s)	97
BsrGI	TGTACA	1 cut(s)	414
BsrI	ACTGG	3 cut(s)	195, 301, 361
BssAI	RCCGGY	1 cut(s)	97
BssECI	CCNNGG	2 cut(s)	321, 481
BssMI	GATC	2 cut(s)	183, 445
BssT1I	CCWWGG	2 cut(s)	321, 481
Bst2UI	CCWGG	3 cut(s)	75, 281, 381
Bst6I	CTCTTC	1 cut(s)	285
BstAUI	TGTACA	1 cut(s)	414
BstC8I	GCNNGC	2 cut(s)	91, 201
BstDEI	CTNAG	2 cut(s)	257, 401
BstDSI	CCRYGG	2 cut(s)	321, 481
BstF5I	GGATG	2 cut(s)	220, 365
BstFNI	CGCG	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	531
BstKTI	GATC	2 cut(s)	186, 448
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	2 cut(s)	183, 445
BstNI	CCWGG	3 cut(s)	75, 281, 381
BstSCI	CCNGG	3 cut(s)	73, 279, 379
BstSFI	CTRYAG	1 cut(s)	102
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	438
BstV2I	GAAGAC	1 cut(s)	464
BstXI	CCANNNNNNTGG	1 cut(s)	356
BtgI	CCRYGG	2 cut(s)	321, 481
BtsCI	GGATG	2 cut(s)	220, 365
BveI	ACCTGC	1 cut(s)	415
Cac8I	GCNNGC	2 cut(s)	91, 201
CfoI	GCGC	1 cut(s)	531
Cfr10I	RCCGGY	1 cut(s)	97
Cfr13I	GGNCC	2 cut(s)	95, 328
CpoI	CGGWCCG	1 cut(s)	95
Csp6I	GTAC	2 cut(s)	170, 415
CspI	CGGWCCG	1 cut(s)	95
CviAII	CATG	4 cut(s)	322, 482, 532, 615
CviQI	GTAC	2 cut(s)	170, 415
DdeI	CTNAG	2 cut(s)	257, 401
DpnI	GATC	2 cut(s)	185, 447
DpnII	GATC	2 cut(s)	183, 445
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Eco130I	CCWWGG	2 cut(s)	321, 481
Eco24I	GRGCYC	1 cut(s)	597
Eco47I	GGWCC	2 cut(s)	95, 328
Eco57I	CTGAAG	1 cut(s)	47
EcoRII	CCWGG	3 cut(s)	73, 279, 379
EcoT14I	CCWWGG	2 cut(s)	321, 481
EcoT38I	GRGCYC	1 cut(s)	597
ErhI	CCWWGG	2 cut(s)	321, 481
FaeI	CATG	4 cut(s)	325, 485, 535, 618
FatI	CATG	4 cut(s)	321, 481, 531, 614
FauNDI	CATATG	1 cut(s)	302
FbaI	TGATCA	1 cut(s)	445
Fnu4HI	GCNGC	1 cut(s)	452
FokI	GGATG	2 cut(s)	227, 372
FriOI	GRGCYC	1 cut(s)	597
Fsp4HI	GCNGC	1 cut(s)	452
GlaI	GCGC	1 cut(s)	530
GluI	GCNGC	1 cut(s)	452
GsuI	CTGGAG	3 cut(s)	212, 263, 402
HapII	CCGG	1 cut(s)	98
HhaI	GCGC	1 cut(s)	531
Hin1II	CATG	4 cut(s)	325, 485, 535, 618
Hin6I	GCGC	1 cut(s)	529
HinP1I	GCGC	1 cut(s)	529
HinfI	GANTC	1 cut(s)	125
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	2 cut(s)	27, 130
Hpy188III	TCNNGA	1 cut(s)	476
Hpy8I	GTNNAC	1 cut(s)	328
HpyAV	CCTTC	4 cut(s)	174, 349, 384, 584
HpyCH4V	TGCA	4 cut(s)	89, 454, 545, 566
HpyF3I	CTNAG	2 cut(s)	257, 401
Hsp92II	CATG	4 cut(s)	325, 485, 535, 618
HspAI	GCGC	1 cut(s)	529
Ksp22I	TGATCA	1 cut(s)	445
Kzo9I	GATC	2 cut(s)	183, 445
LmnI	GCTCC	1 cut(s)	513
Lsp1109I	GCAGC	1 cut(s)	438
LweI	GCATC	2 cut(s)	350, 532
MaeIII	GTNAC	1 cut(s)	476
MalI	GATC	2 cut(s)	185, 447
MboI	GATC	2 cut(s)	183, 445
MboII	GAAGA	4 cut(s)	299, 302, 407, 464
MhlI	GDGCHC	2 cut(s)	510, 597
MmeI	TCCRAC	2 cut(s)	157, 192
MnlI	CCTC	8 cut(s)	6, 124, 341, 353, 377, 413, 416, 612
MseI	TTAA	1 cut(s)	554
MspA1I	CMGCKG	2 cut(s)	451, 539
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	3 cut(s)	75, 281, 381
MvaI	CCWGG	3 cut(s)	75, 281, 381
MvnI	CGCG	1 cut(s)	93
NcoI	CCATGG	2 cut(s)	321, 481
NdeI	CATATG	1 cut(s)	302
NdeII	GATC	2 cut(s)	183, 445
NlaIII	CATG	4 cut(s)	325, 485, 535, 618
NlaIV	GGNNCC	2 cut(s)	72, 241
NmeAIII	GCCGAG	1 cut(s)	216
NmuCI	GTSAC	1 cut(s)	476
PaqCI	CACCTGC	1 cut(s)	415
PfeI	GAWTC	1 cut(s)	125
PfoI	TCCNGGA	1 cut(s)	379
PkrI	GCNGC	1 cut(s)	453
PsiI	TTATAA	1 cut(s)	272
Psp6I	CCWGG	3 cut(s)	73, 279, 379
PspGI	CCWGG	3 cut(s)	73, 279, 379
PspN4I	GGNNCC	2 cut(s)	72, 241
PspPI	GGNCC	2 cut(s)	95, 328
PvuII	CAGCTG	2 cut(s)	451, 539
RsaI	GTAC	2 cut(s)	171, 416
RsaNI	GTAC	2 cut(s)	170, 415
Rsr2I	CGGWCCG	1 cut(s)	95
RsrII	CGGWCCG	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	554
SatI	GCNGC	1 cut(s)	452
Sau3AI	GATC	2 cut(s)	183, 445
Sau96I	GGNCC	2 cut(s)	95, 328
ScrFI	CCNGG	3 cut(s)	75, 281, 381
SduI	GDGCHC	2 cut(s)	510, 597
SfaNI	GCATC	2 cut(s)	350, 532
SfcI	CTRYAG	1 cut(s)	102
SinI	GGWCC	2 cut(s)	95, 328
SsiI	CCGC	3 cut(s)	93, 243, 363
SspI	AATATT	1 cut(s)	369
StyD4I	CCNGG	3 cut(s)	73, 279, 379
StyI	CCWWGG	2 cut(s)	321, 481
TaqI	TCGA	1 cut(s)	345
TatI	WGTACW	1 cut(s)	414
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	1 cut(s)	554
Tru9I	TTAA	1 cut(s)	554
TseFI	GTSAC	1 cut(s)	476
TseI	GCWGC	1 cut(s)	451
Tsp45I	GTSAC	1 cut(s)	476
TspDTI	ATGAA	3 cut(s)	408, 531, 588
TspGWI	ACGGA	1 cut(s)	239
VpaK11BI	GGWCC	2 cut(s)	95, 328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.