Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Reverse (-)

6678139 .. 6680437

Gene Structure 2299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g06610.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGCTTCAAGCTTGGAAACCACTGAGGCTGAACATTCTCGCGAAAACACTCCGCCTTTCCTCTTCTTCTCCCACACGCCTTCCAATCCAATCCTTCTCCTGCAAAATGTCGTCCGACTCGCCGCCCTTAACTCACTCCATCACTCTCCCGAGTCAACTCGCCGAACCCGTCCAGATCGTTGCCGCCCCCAACATATCCCCTTCTGAGTTCAGGAGCGCCATCGATTCGTCTTTGTTCAAACAGTGGCTGAAGAACATGGAAAGTGAAAGTGGGGTTTTAAGTGGCGGCGGCTTGTTTCTTAAACGAGTTTTAATTCAGGGTGTTGATATGTTCGGAAATCGAATTGGGTTTTTGAAATTTGTAGCAGATGTGCTTGATAAAGAAACTGGGAAAAAGGTTCCAGGTATTGTGTTTGCACGAGGACCGGCTGTGGCCGTGCTAATCCTTTTGGACTCAGAGGGCAAGACCTATGCTGTTCTTACTGAACAGGTTAGAATCCCGGTTGGAAGGATCATATTGGAATTGCCTGCTGGAATGTTAGATGATGACAAGGGTGATTTTCTCGGCACTGCAATCCGTGAGGTTGAAGAGGAGACTGGTATATGCCTAAAACAAAAAGATATGGTGGACCTCACGGCCTTCCTCGACGAATCTACTGGACGCAGAATTTTTCCTTCACCAGGAGGGTGCGATGAAGAAATAAGCCTATTTTTGTACAGAGGGCCGGTGGATAAAGGGATTATTGAGCAGCTGCAAGGGAAAGAAACAGGTCTTCGTGAACATGGCGAACTGATTAAGCTCTGCGTGGTTCCGTATGAAAAGCTCTGGTGCACAACAGCTGATGCAAAGGTTTTAGCAGCCCTTACGCTTTATGAAATGGCCAAAAGAGGAGGGCTCTTGCCTCCGCCAAAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019144 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0080041 GO:0080042

KEGG Pathways

Metabolic & Signaling

ko00051 ko00230 ko00500 ko01100 ko01110 map00051 map00230 map00500 map01100 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

306

Amino Acids

33.28

Weight (kDa)

6.23

Isoelectric Point (pI)

57.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	41
AciI	CCGC	6 cut(s)	52, 122, 183, 285, 288, 905
AclWI	GGATC	1 cut(s)	518
AcoI	YGGCCR	2 cut(s)	432, 879
AcsI	RAATTY	2 cut(s)	356, 666
AcuI	CTGAAG	1 cut(s)	269
AfaI	GTAC	1 cut(s)	716
AfiI	CCNNNNNNNGG	1 cut(s)	680
AgsI	TTSAA	4 cut(s)	8, 238, 355, 587
AjnI	CCWGG	2 cut(s)	400, 679
AluBI	AGCT	5 cut(s)	11, 751, 799, 823, 839
AluI	AGCT	5 cut(s)	11, 751, 799, 823, 839
Alw21I	GWGCWC	1 cut(s)	833
Alw26I	GTCTC	1 cut(s)	587
Alw44I	GTGCAC	1 cut(s)	829
AlwI	GGATC	1 cut(s)	518
AlwNI	CAGNNNCTG	1 cut(s)	247
Ama87I	CYCGRG	1 cut(s)	148
AoxI	GGCC	4 cut(s)	432, 636, 722, 879
ApaLI	GTGCAC	1 cut(s)	829
ApeKI	GCWGC	3 cut(s)	748, 751, 857
ApoI	RAATTY	2 cut(s)	356, 666
AspLEI	GCGC	1 cut(s)	218
AspS9I	GGNCC	3 cut(s)	422, 628, 722
AsuC2I	CCSGG	1 cut(s)	500
AsuHPI	GGTGA	2 cut(s)	566, 669
AvaI	CYCGRG	1 cut(s)	148
AvaII	GGWCC	2 cut(s)	422, 628
BaeGI	GKGCMC	1 cut(s)	833
BalI	TGGCCA	1 cut(s)	881
BanII	GRGCYC	1 cut(s)	897
BauI	CACGAG	1 cut(s)	417
BbsI	GAAGAC	1 cut(s)	764
Bbv12I	GWGCWC	1 cut(s)	833
BbvI	GCAGC	3 cut(s)	738, 760, 869
BccI	CCATC	2 cut(s)	146, 227
BceAI	ACGGC	2 cut(s)	419, 651
BciT130I	CCWGG	2 cut(s)	402, 681
BcnI	CCSGG	1 cut(s)	500
BcoDI	GTCTC	1 cut(s)	587
BfoI	RGCGCY	1 cut(s)	219
BisI	GCNGC	7 cut(s)	122, 183, 286, 289, 749, 752, 858
BlsI	GCNGC	7 cut(s)	123, 184, 287, 290, 750, 753, 859
Bme1390I	CCNGG	3 cut(s)	402, 500, 681
Bme18I	GGWCC	2 cut(s)	422, 628
BmeT110I	CYCGRG	1 cut(s)	148
BmgT120I	GGNCC	3 cut(s)	422, 628, 722
BmiI	GGNNCC	2 cut(s)	399, 810
BmrFI	CCNGG	3 cut(s)	402, 500, 681
BmrI	ACTGGG	1 cut(s)	396
BmsI	GCATC	1 cut(s)	832
BmuI	ACTGGG	1 cut(s)	396
BpiI	GAAGAC	1 cut(s)	764
BplI	GAGNNNNNCTC	2 cut(s)	879, 911
BpuMI	CCSGG	1 cut(s)	500
Bsa29I	ATCGAT	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	1 cut(s)	680
Bse118I	RCCGGY	2 cut(s)	424, 724
Bse1I	ACTGG	3 cut(s)	391, 601, 661
BseBI	CCWGG	2 cut(s)	402, 681
BseCI	ATCGAT	1 cut(s)	222
BseLI	CCNNNNNNNGG	1 cut(s)	680
BseMII	CTCAG	3 cut(s)	14, 195, 468
BseNI	ACTGG	3 cut(s)	391, 601, 661
BseRI	GAGGAG	2 cut(s)	605, 903
BseSI	GKGCMC	1 cut(s)	833
BseXI	GCAGC	3 cut(s)	738, 760, 869
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	4 cut(s)	434, 638, 724, 881
BshVI	ATCGAT	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	833
BsiHKCI	CYCGRG	1 cut(s)	148
BsiSI	CCGG	3 cut(s)	425, 500, 725
BslI	CCNNNNNNNGG	1 cut(s)	680
BsmAI	GTCTC	1 cut(s)	587
BsnI	GGCC	4 cut(s)	434, 638, 724, 881
BsoBI	CYCGRG	1 cut(s)	148
Bsp1286I	GDGCHC	2 cut(s)	833, 897
Bsp1407I	TGTACA	1 cut(s)	714
Bsp143I	GATC	2 cut(s)	174, 510
Bsp68I	TCGCGA	1 cut(s)	41
BspACI	CCGC	6 cut(s)	52, 122, 183, 285, 288, 905
BspANI	GGCC	4 cut(s)	434, 638, 724, 881
BspCNI	CTCAG	3 cut(s)	15, 196, 467
BspDI	ATCGAT	1 cut(s)	222
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	2 cut(s)	399, 810
BspPI	GGATC	1 cut(s)	518
BsrFI	RCCGGY	2 cut(s)	424, 724
BsrGI	TGTACA	1 cut(s)	714
BsrI	ACTGG	3 cut(s)	391, 601, 661
BssAI	RCCGGY	2 cut(s)	424, 724
BssMI	GATC	2 cut(s)	174, 510
BssSI	CACGAG	1 cut(s)	417
Bst2BI	CACGAG	1 cut(s)	417
Bst2UI	CCWGG	2 cut(s)	402, 681
Bst4CI	ACNGT	1 cut(s)	243
Bst6I	CTCTTC	2 cut(s)	67, 582
BstAUI	TGTACA	1 cut(s)	714
BstC8I	GCNNGC	1 cut(s)	528
BstDEI	CTNAG	3 cut(s)	23, 204, 454
BstENI	CCTNNNNNAGG	1 cut(s)	678
BstFNI	CGCG	1 cut(s)	41
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	2 cut(s)	177, 513
BstMAI	GTCTC	1 cut(s)	587
BstMBI	GATC	2 cut(s)	174, 510
BstNI	CCWGG	2 cut(s)	402, 681
BstSCI	CCNGG	3 cut(s)	400, 498, 679
BstSLI	GKGCMC	1 cut(s)	833
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	3 cut(s)	738, 760, 869
BstV2I	GAAGAC	1 cut(s)	764
Bsu15I	ATCGAT	1 cut(s)	222
BsuRI	GGCC	4 cut(s)	434, 638, 724, 881
BsuTUI	ATCGAT	1 cut(s)	222
BtgZI	GCGATG	1 cut(s)	705
BtsI	GCAGTG	1 cut(s)	567
BtsIMutI	CAGTG	3 cut(s)	20, 248, 567
BtuMI	TCGCGA	1 cut(s)	41
Cac8I	GCNNGC	1 cut(s)	528
CaiI	CAGNNNCTG	1 cut(s)	247
CfoI	GCGC	1 cut(s)	218
Cfr10I	RCCGGY	2 cut(s)	424, 724
Cfr13I	GGNCC	3 cut(s)	422, 628, 722
ClaI	ATCGAT	1 cut(s)	222
CseI	GACGC	1 cut(s)	669
Csp6I	GTAC	1 cut(s)	715
CviAII	CATG	2 cut(s)	256, 782
CviQI	GTAC	1 cut(s)	715
DdeI	CTNAG	3 cut(s)	23, 204, 454
DpnI	GATC	2 cut(s)	176, 512
DpnII	GATC	2 cut(s)	174, 510
EaeI	YGGCCR	2 cut(s)	432, 879
Eam1104I	CTCTTC	2 cut(s)	67, 582
EarI	CTCTTC	2 cut(s)	67, 582
EciI	GGCGGA	2 cut(s)	41, 894
Eco24I	GRGCYC	1 cut(s)	897
Eco47I	GGWCC	2 cut(s)	422, 628
Eco57I	CTGAAG	1 cut(s)	269
Eco88I	CYCGRG	1 cut(s)	148
EcoNI	CCTNNNNNAGG	1 cut(s)	678
EcoRII	CCWGG	2 cut(s)	400, 679
EcoT38I	GRGCYC	1 cut(s)	897
FaeI	CATG	2 cut(s)	259, 785
FatI	CATG	2 cut(s)	255, 781
Fnu4HI	GCNGC	7 cut(s)	122, 183, 286, 289, 749, 752, 858
FriOI	GRGCYC	1 cut(s)	897
Fsp4HI	GCNGC	7 cut(s)	122, 183, 286, 289, 749, 752, 858
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	7 cut(s)	122, 183, 286, 289, 749, 752, 858
HaeII	RGCGCY	1 cut(s)	219
HaeIII	GGCC	4 cut(s)	434, 638, 724, 881
HapII	CCGG	3 cut(s)	425, 500, 725
HgaI	GACGC	1 cut(s)	669
HhaI	GCGC	1 cut(s)	218
Hin1II	CATG	2 cut(s)	259, 785
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HincII	GTYRAC	1 cut(s)	155
HindII	GTYRAC	1 cut(s)	155
HindIII	AAGCTT	1 cut(s)	9
HinfI	GANTC	6 cut(s)	116, 151, 224, 452, 495, 650
HpaII	CCGG	3 cut(s)	425, 500, 725
HphI	GGTGA	2 cut(s)	566, 669
Hpy166II	GTNNAC	4 cut(s)	155, 628, 779, 831
Hpy188I	TCNGA	4 cut(s)	115, 205, 335, 457
Hpy188III	TCNNGA	5 cut(s)	40, 148, 172, 211, 776
Hpy8I	GTNNAC	4 cut(s)	155, 628, 779, 831
Hpy99I	CGWCG	1 cut(s)	650
HpyAV	CCTTC	6 cut(s)	89, 103, 210, 501, 649, 684
HpyCH4III	ACNGT	1 cut(s)	243
HpyCH4V	TGCA	6 cut(s)	102, 416, 572, 754, 831, 845
HpyF3I	CTNAG	3 cut(s)	23, 204, 454
Hsp92II	CATG	2 cut(s)	259, 785
HspAI	GCGC	1 cut(s)	216
Kzo9I	GATC	2 cut(s)	174, 510
LmnI	GCTCC	1 cut(s)	213
Lsp1109I	GCAGC	3 cut(s)	738, 760, 869
LweI	GCATC	1 cut(s)	832
MalI	GATC	2 cut(s)	176, 512
MboI	GATC	2 cut(s)	174, 510
MboII	GAAGA	6 cut(s)	54, 57, 262, 599, 707, 764
MhlI	GDGCHC	2 cut(s)	833, 897
MlsI	TGGCCA	1 cut(s)	881
MluCI	AATT	5 cut(s)	312, 342, 356, 521, 666
MluNI	TGGCCA	1 cut(s)	881
MlyI	GAGTC	3 cut(s)	110, 160, 446
MmeI	TCCRAC	2 cut(s)	138, 484
Mox20I	TGGCCA	1 cut(s)	881
MscI	TGGCCA	1 cut(s)	881
MseI	TTAA	5 cut(s)	128, 278, 300, 311, 795
Msp20I	TGGCCA	1 cut(s)	881
MspA1I	CMGCKG	2 cut(s)	751, 839
MspI	CCGG	3 cut(s)	425, 500, 725
MspR9I	CCNGG	3 cut(s)	402, 500, 681
MvaI	CCWGG	2 cut(s)	402, 681
MvnI	CGCG	1 cut(s)	41
NciI	CCSGG	1 cut(s)	500
NdeII	GATC	2 cut(s)	174, 510
NlaIII	CATG	2 cut(s)	259, 785
NlaIV	GGNNCC	2 cut(s)	399, 810
NmeAIII	GCCGAG	1 cut(s)	543
NruI	TCGCGA	1 cut(s)	41
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PfeI	GAWTC	3 cut(s)	224, 495, 650
PkrI	GCNGC	7 cut(s)	123, 184, 287, 290, 750, 753, 859
PleI	GAGTC	3 cut(s)	110, 159, 446
PpsI	GAGTC	3 cut(s)	110, 159, 446
Psp6I	CCWGG	2 cut(s)	400, 679
PspGI	CCWGG	2 cut(s)	400, 679
PspN4I	GGNNCC	2 cut(s)	399, 810
PspPI	GGNCC	3 cut(s)	422, 628, 722
PstNI	CAGNNNCTG	1 cut(s)	247
PvuII	CAGCTG	2 cut(s)	751, 839
RruI	TCGCGA	1 cut(s)	41
RsaI	GTAC	1 cut(s)	716
RsaNI	GTAC	1 cut(s)	715
SaqAI	TTAA	5 cut(s)	128, 278, 300, 311, 795
SatI	GCNGC	7 cut(s)	122, 183, 286, 289, 749, 752, 858
Sau3AI	GATC	2 cut(s)	174, 510
Sau96I	GGNCC	3 cut(s)	422, 628, 722
SchI	GAGTC	3 cut(s)	110, 160, 446
ScrFI	CCNGG	3 cut(s)	402, 500, 681
SduI	GDGCHC	2 cut(s)	833, 897
SfaNI	GCATC	1 cut(s)	832
SinI	GGWCC	2 cut(s)	422, 628
Sse9I	AATT	5 cut(s)	312, 342, 356, 521, 666
SsiI	CCGC	6 cut(s)	52, 122, 183, 285, 288, 905
StyD4I	CCNGG	3 cut(s)	400, 498, 679
TaaI	ACNGT	1 cut(s)	243
TaqI	TCGA	3 cut(s)	222, 340, 645
TasI	AATT	5 cut(s)	312, 342, 356, 521, 666
TatI	WGTACW	1 cut(s)	714
TauI	GCSGC	4 cut(s)	124, 185, 288, 291
TfiI	GAWTC	3 cut(s)	224, 495, 650
Tru1I	TTAA	5 cut(s)	128, 278, 300, 311, 795
Tru9I	TTAA	5 cut(s)	128, 278, 300, 311, 795
TscAI	CASTG	3 cut(s)	27, 248, 574
TseI	GCWGC	3 cut(s)	748, 751, 857
TspDTI	ATGAA	3 cut(s)	708, 831, 888
TspGWI	ACGGA	2 cut(s)	566, 801
TspRI	CASTG	3 cut(s)	27, 248, 574
VneI	GTGCAC	1 cut(s)	829
VpaK11BI	GGWCC	2 cut(s)	422, 628
XagI	CCTNNNNNAGG	1 cut(s)	678
XapI	RAATTY	2 cut(s)	356, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.