Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Forward (+)

16724786 .. 16726601

Gene Structure 1816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001516

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGACTACTCCCAGGCTTCTCGGTCCTCCTGAGCTCCAAAAACCCTCACCCACCACCACCGCTCTGCCGCCACCAAACCCGGCCCCAAACCCTCCACCGGCGAACCCTTCTCCCACTGAGGTTGGATCCTTCAGCTGCAAAATGTCGTCTGACTCGTCACCACCGTTAACTTACTCTATTACTCTATCCTGTCAACCCGCCCAACCCGTCCAGATCGTCGCTGCCCCCCATATCTCCGATTCCGATTTCAGGAGTGCTATCGATTCTTCCTTGTTTAAGCAGTGGCTGAAGAACACCCAGAGTGAAAATGGGATTTTACACGGCGGTTCCATGTCTCTTACACGAGTTCTAATTCAGGGAGTGGATATGTTCAGGAAGCACATCGGTTTTCTGAAATTCCAAGCAGATGTATTCAATAAACAAACAGGGAAAAAGGTATTTGTTTGCACGAGGAGTAGTTGTAGCTGTGCTTATCCTTTTGAAGTCAGAGGAGATGACAGTTGCCTGCTGGAATGTTGGATGTTGACAAGGGTGATTTTCTTGGAGCTGCAATCCGTGAGGTGTGCTTTTCCCTATGTATTCTCATCTAGAGGATGGAGTGAGCTACTGAATCTTCTTTCTCCAGTTTCCAAAACTTTGTGGAGTGACTTGAACTGCAGCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019144 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0080041 GO:0080042

KEGG Pathways

Metabolic & Signaling

ko00051 ko00230 ko00500 ko01100 ko01110 map00051 map00230 map00500 map01100 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

222

Amino Acids

24.29

Weight (kDa)

8.38

Isoelectric Point (pI)

79.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	62
AciI	CCGC	4 cut(s)	60, 68, 198, 324
AclWI	GGATC	2 cut(s)	120, 133
AcsI	RAATTY	1 cut(s)	395
AcuI	CTGAAG	2 cut(s)	115, 308
AfiI	CCNNNNNNNGG	2 cut(s)	97, 249
AgsI	TTSAA	3 cut(s)	415, 482, 652
AjnI	CCWGG	1 cut(s)	11
AluBI	AGCT	5 cut(s)	34, 135, 465, 547, 604
AluI	AGCT	5 cut(s)	34, 135, 465, 547, 604
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	1 cut(s)	339
AlwI	GGATC	2 cut(s)	120, 133
AlwNI	CAGNNNCTG	2 cut(s)	286, 663
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	4 cut(s)	135, 221, 547, 657
ApoI	RAATTY	1 cut(s)	395
AspS9I	GGNCC	2 cut(s)	23, 82
AsuC2I	CCSGG	1 cut(s)	80
AsuHPI	GGTGA	3 cut(s)	39, 150, 544
AvaII	GGWCC	1 cut(s)	23
BamHI	GGATCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	36
BauI	CACGAG	2 cut(s)	342, 448
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	3 cut(s)	122, 208, 534
BccI	CCATC	1 cut(s)	588
BceAI	ACGGC	1 cut(s)	337
BciT130I	CCWGG	1 cut(s)	13
BcnI	CCSGG	1 cut(s)	80
BcoDI	GTCTC	1 cut(s)	339
BfaI	CTAG	1 cut(s)	588
BfmI	CTRYAG	1 cut(s)	655
BisI	GCNGC	5 cut(s)	68, 136, 222, 548, 658
BlsI	GCNGC	5 cut(s)	69, 137, 223, 549, 659
Bme1390I	CCNGG	2 cut(s)	13, 80
Bme18I	GGWCC	1 cut(s)	23
BmgT120I	GGNCC	2 cut(s)	23, 82
BmiI	GGNNCC	3 cut(s)	84, 127, 328
BmrFI	CCNGG	2 cut(s)	13, 80
BpmI	CTGGAG	1 cut(s)	606
Bpu10I	CCTNAGC	1 cut(s)	30
BpuMI	CCSGG	1 cut(s)	80
Bsa29I	ATCGAT	1 cut(s)	261
BsaJI	CCNNGG	1 cut(s)	11
BsaXI	ACNNNNNCTCC	2 cut(s)	445, 475
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 249
Bse118I	RCCGGY	1 cut(s)	97
Bse1I	ACTGG	1 cut(s)	623
BseBI	CCWGG	1 cut(s)	13
BseCI	ATCGAT	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	11
BseGI	GGATG	2 cut(s)	525, 599
BseLI	CCNNNNNNNGG	2 cut(s)	97, 249
BseMII	CTCAG	2 cut(s)	21, 108
BseNI	ACTGG	1 cut(s)	623
BseRI	GAGGAG	2 cut(s)	466, 504
BseXI	GCAGC	3 cut(s)	122, 208, 534
BshFI	GGCC	1 cut(s)	83
BshVI	ATCGAT	1 cut(s)	261
BsiHKAI	GWGCWC	1 cut(s)	36
BsiSI	CCGG	2 cut(s)	80, 98
BslI	CCNNNNNNNGG	2 cut(s)	97, 249
BsmAI	GTCTC	1 cut(s)	339
BsnI	GGCC	1 cut(s)	83
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	2 cut(s)	125, 213
BspACI	CCGC	4 cut(s)	60, 68, 198, 324
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	2 cut(s)	22, 109
BspDI	ATCGAT	1 cut(s)	261
BspLI	GGNNCC	3 cut(s)	84, 127, 328
BspMAI	CTGCAG	1 cut(s)	659
BspPI	GGATC	2 cut(s)	120, 133
BsrBI	CCGCTC	1 cut(s)	62
BsrFI	RCCGGY	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	623
BssAI	RCCGGY	1 cut(s)	97
BssECI	CCNNGG	1 cut(s)	11
BssMI	GATC	2 cut(s)	125, 213
BssSI	CACGAG	2 cut(s)	342, 448
Bst2BI	CACGAG	2 cut(s)	342, 448
Bst2UI	CCWGG	1 cut(s)	13
Bst4CI	ACNGT	2 cut(s)	165, 500
BstC8I	GCNNGC	1 cut(s)	506
BstDEI	CTNAG	2 cut(s)	30, 117
BstF5I	GGATG	2 cut(s)	525, 599
BstKTI	GATC	2 cut(s)	128, 216
BstMAI	GTCTC	1 cut(s)	339
BstMBI	GATC	2 cut(s)	125, 213
BstNI	CCWGG	1 cut(s)	13
BstSCI	CCNGG	2 cut(s)	11, 78
BstSFI	CTRYAG	1 cut(s)	655
BstV1I	GCAGC	3 cut(s)	122, 208, 534
BstX2I	RGATCY	1 cut(s)	125
BstYI	RGATCY	1 cut(s)	125
Bsu15I	ATCGAT	1 cut(s)	261
BsuRI	GGCC	1 cut(s)	83
BsuTUI	ATCGAT	1 cut(s)	261
BtsCI	GGATG	2 cut(s)	525, 599
BtsI	GCAGTG	1 cut(s)	287
BtsIMutI	CAGTG	2 cut(s)	114, 287
Cac8I	GCNNGC	1 cut(s)	506
CaiI	CAGNNNCTG	2 cut(s)	286, 663
Cfr10I	RCCGGY	1 cut(s)	97
Cfr13I	GGNCC	2 cut(s)	23, 82
ClaI	ATCGAT	1 cut(s)	261
CspCI	CAANNNNNGTGG	2 cut(s)	103, 138
CviAII	CATG	1 cut(s)	331
CviJI	RGCY	8 cut(s)	16, 34, 83, 135, 286, 465, 547, 604
CviKI_1	RGCY	8 cut(s)	16, 34, 83, 135, 286, 465, 547, 604
DdeI	CTNAG	2 cut(s)	30, 117
DpnI	GATC	2 cut(s)	127, 215
DpnII	GATC	2 cut(s)	125, 213
Ecl136II	GAGCTC	1 cut(s)	34
Eco24I	GRGCYC	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	23
Eco53kI	GAGCTC	1 cut(s)	34
Eco57I	CTGAAG	2 cut(s)	115, 308
EcoICRI	GAGCTC	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	11
EcoT38I	GRGCYC	1 cut(s)	36
FaeI	CATG	1 cut(s)	334
FaiI	YATR	4 cut(s)	231, 332, 368, 576
FatI	CATG	1 cut(s)	330
FauI	CCCGC	1 cut(s)	205
Fnu4HI	GCNGC	5 cut(s)	68, 136, 222, 548, 658
FokI	GGATG	2 cut(s)	532, 606
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	5 cut(s)	68, 136, 222, 548, 658
FspBI	CTAG	1 cut(s)	588
GluI	GCNGC	5 cut(s)	68, 136, 222, 548, 658
GsuI	CTGGAG	1 cut(s)	606
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	2 cut(s)	80, 98
Hin1II	CATG	1 cut(s)	334
HincII	GTYRAC	3 cut(s)	168, 194, 525
HindII	GTYRAC	3 cut(s)	168, 194, 525
HinfI	GANTC	4 cut(s)	152, 239, 263, 610
HpaI	GTTAAC	1 cut(s)	168
HpaII	CCGG	2 cut(s)	80, 98
HphI	GGTGA	3 cut(s)	39, 150, 544
Hpy166II	GTNNAC	3 cut(s)	168, 194, 525
Hpy188I	TCNGA	5 cut(s)	151, 238, 244, 393, 488
Hpy188III	TCNNGA	5 cut(s)	29, 211, 250, 373, 588
Hpy8I	GTNNAC	3 cut(s)	168, 194, 525
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	2 cut(s)	117, 139
HpyCH4III	ACNGT	2 cut(s)	165, 500
HpyCH4V	TGCA	4 cut(s)	138, 447, 550, 657
HpyF3I	CTNAG	2 cut(s)	30, 117
Hsp92II	CATG	1 cut(s)	334
KspAI	GTTAAC	1 cut(s)	168
Kzo9I	GATC	2 cut(s)	125, 213
LmnI	GCTCC	2 cut(s)	39, 544
Lsp1109I	GCAGC	3 cut(s)	122, 208, 534
MaeI	CTAG	1 cut(s)	588
MaeIII	GTNAC	2 cut(s)	156, 644
MalI	GATC	2 cut(s)	127, 215
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	2 cut(s)	125, 213
MboII	GAAGA	3 cut(s)	258, 301, 605
MflI	RGATCY	1 cut(s)	125
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	2 cut(s)	351, 395
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	2 cut(s)	103, 497
MnlI	CCTC	8 cut(s)	36, 55, 102, 112, 444, 482, 552, 584
MseI	TTAA	2 cut(s)	167, 276
MspA1I	CMGCKG	1 cut(s)	135
MspI	CCGG	2 cut(s)	80, 98
MspR9I	CCNGG	2 cut(s)	13, 80
MvaI	CCWGG	1 cut(s)	13
NciI	CCSGG	1 cut(s)	80
NdeII	GATC	2 cut(s)	125, 213
NlaIII	CATG	1 cut(s)	334
NlaIV	GGNNCC	3 cut(s)	84, 127, 328
NmuCI	GTSAC	2 cut(s)	156, 644
PcsI	WCGNNNNNNNCGW	2 cut(s)	152, 161
PfeI	GAWTC	3 cut(s)	239, 263, 610
PkrI	GCNGC	5 cut(s)	69, 137, 223, 549, 659
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
Psp124BI	GAGCTC	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	11
PspGI	CCWGG	1 cut(s)	11
PspN4I	GGNNCC	3 cut(s)	84, 127, 328
PspPI	GGNCC	2 cut(s)	23, 82
PstI	CTGCAG	1 cut(s)	659
PstNI	CAGNNNCTG	2 cut(s)	286, 663
PsuI	RGATCY	1 cut(s)	125
PvuII	CAGCTG	1 cut(s)	135
SacI	GAGCTC	1 cut(s)	36
SaqAI	TTAA	2 cut(s)	167, 276
SatI	GCNGC	5 cut(s)	68, 136, 222, 548, 658
Sau3AI	GATC	2 cut(s)	125, 213
Sau96I	GGNCC	2 cut(s)	23, 82
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	2 cut(s)	13, 80
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	8 cut(s)	36, 123, 137, 438, 467, 549, 563, 606
SfcI	CTRYAG	1 cut(s)	655
SgrAI	CRCCGGYG	1 cut(s)	97
SinI	GGWCC	1 cut(s)	23
Sse9I	AATT	2 cut(s)	351, 395
SsiI	CCGC	4 cut(s)	60, 68, 198, 324
SspMI	CTAG	1 cut(s)	588
SstI	GAGCTC	1 cut(s)	36
StyD4I	CCNGG	2 cut(s)	11, 78
TaaI	ACNGT	2 cut(s)	165, 500
TaqI	TCGA	1 cut(s)	261
TaqII	GACCGA	1 cut(s)	11
TasI	AATT	2 cut(s)	351, 395
TauI	GCSGC	1 cut(s)	70
TfiI	GAWTC	3 cut(s)	239, 263, 610
Tru1I	TTAA	2 cut(s)	167, 276
Tru9I	TTAA	2 cut(s)	167, 276
TscAI	CASTG	2 cut(s)	121, 287
TseFI	GTSAC	2 cut(s)	156, 644
TseI	GCWGC	4 cut(s)	135, 221, 547, 657
Tsp45I	GTSAC	2 cut(s)	156, 644
TspGWI	ACGGA	1 cut(s)	544
TspRI	CASTG	2 cut(s)	121, 287
VpaK11BI	GGWCC	1 cut(s)	23
XapI	RAATTY	1 cut(s)	395
XbaI	TCTAGA	1 cut(s)	587
XcmI	CCANNNNNNNNNTGG	1 cut(s)	305
XspI	CTAG	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.