Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Reverse (-)

51058115 .. 51059791

Gene Structure 1677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39463

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTCATCTGACTCATCACCACCATTAACTTACTCCATTACTCTATCCTGTCAACCCGTCCAGATCGTCGCTGCCCCCCATATCTCCGATTCCGATTTCAGGCGAGTCAAAGTTGCACTTTGTTTTTACTTTTTAGAATGTTGTGGTTTTTGGAGTGCTATCGATTCTTCTTTGTTTAAGCAGTGGCTGAAGAACACCCAGAGTGAAAATGGGATTTTACACGGCGGTTCCATGTCTCTTACACGAGTTCTAATTCAGCACATTGGTTTTCTGAAATTCCAAGCAGATGTATTCGATAAACAAACAGGGAAAAAGGTTCCAGGTATTGTGTTTGCAAGAGGAGCAGCTGTAGCTGTGCTTATCCTTTTGAAGTCAGAGGAGATGACGTATGCTGTTCTTACTGAGCAGTTGCCTGATAGAATGTTGGATGTCGACAAGGGTGATTTTCTTGGAGCTACAATCCGTGAGGATGGAGTGAGGTGGTGGAGTGATGGACTTCACCAAGCAGTTGAAGCAAAAGAAGTTTTGTCGATTCAAAACGAAACTGTAACTCTGGCATCTATTAGCTACCAAAACTTCTTTCTCCAGCAACTGAAAGCACAGAATTTGAAAGCATATACAAGCTTAAAGTTACAATTGTCCCCACAAACAAGCCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019144 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0080041 GO:0080042

KEGG Pathways

Metabolic & Signaling

ko00051 ko00230 ko00500 ko01100 ko01110 map00051 map00230 map00500 map01100 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

219

Amino Acids

24.38

Weight (kDa)

6.42

Isoelectric Point (pI)

46.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	432
AciI	CCGC	1 cut(s)	225
AcsI	RAATTY	2 cut(s)	275, 604
AcuI	CTGAAG	1 cut(s)	209
AfiI	CCNNNNNNNGG	1 cut(s)	99
AgsI	TTSAA	4 cut(s)	370, 512, 536, 610
AjnI	CCWGG	1 cut(s)	319
AjuI	GAANNNNNNNTTGG	2 cut(s)	564, 596
AluBI	AGCT	5 cut(s)	347, 353, 455, 567, 624
AluI	AGCT	5 cut(s)	347, 353, 455, 567, 624
Alw26I	GTCTC	1 cut(s)	240
AlwNI	CAGNNNCTG	2 cut(s)	187, 592
ApeKI	GCWGC	2 cut(s)	71, 344
ApoI	RAATTY	2 cut(s)	275, 604
AsuHPI	GGTGA	3 cut(s)	9, 452, 491
BauI	CACGAG	1 cut(s)	243
BbvI	GCAGC	2 cut(s)	58, 356
BccI	CCATC	2 cut(s)	464, 485
BceAI	ACGGC	1 cut(s)	238
BciT130I	CCWGG	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	240
BfmI	CTRYAG	1 cut(s)	348
BisI	GCNGC	2 cut(s)	72, 345
BlsI	GCNGC	2 cut(s)	73, 346
Bme1390I	CCNGG	1 cut(s)	321
BmiI	GGNNCC	2 cut(s)	229, 318
BmrFI	CCNGG	1 cut(s)	321
BmsI	GCATC	1 cut(s)	566
BpmI	CTGGAG	1 cut(s)	569
Bsa29I	ATCGAT	1 cut(s)	162
BsaXI	ACNNNNNCTCC	4 cut(s)	333, 363, 371, 401
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	321
BseCI	ATCGAT	1 cut(s)	162
BseGI	GGATG	2 cut(s)	433, 475
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	393
BseRI	GAGGAG	2 cut(s)	354, 392
BseXI	GCAGC	2 cut(s)	58, 356
BshVI	ATCGAT	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	625
BslI	CCNNNNNNNGG	1 cut(s)	99
BsmAI	GTCTC	1 cut(s)	240
BsmFI	GGGAC	1 cut(s)	625
Bsp143I	GATC	1 cut(s)	63
BspACI	CCGC	1 cut(s)	225
BspCNI	CTCAG	1 cut(s)	394
BspDI	ATCGAT	1 cut(s)	162
BspLI	GGNNCC	2 cut(s)	229, 318
BssMI	GATC	1 cut(s)	63
BssSI	CACGAG	1 cut(s)	243
Bst2BI	CACGAG	1 cut(s)	243
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	1 cut(s)	547
BstDEI	CTNAG	1 cut(s)	402
BstF5I	GGATG	2 cut(s)	433, 475
BstKTI	GATC	1 cut(s)	66
BstMAI	GTCTC	1 cut(s)	240
BstMBI	GATC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	3 cut(s)	341, 350, 512
BstNI	CCWGG	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	319
BstSFI	CTRYAG	1 cut(s)	348
BstV1I	GCAGC	2 cut(s)	58, 356
Bsu15I	ATCGAT	1 cut(s)	162
BsuTUI	ATCGAT	1 cut(s)	162
BtsCI	GGATG	2 cut(s)	433, 475
BtsI	GCAGTG	1 cut(s)	188
BtsIMutI	CAGTG	1 cut(s)	188
CaiI	CAGNNNCTG	2 cut(s)	187, 592
ClaI	ATCGAT	1 cut(s)	162
CviAII	CATG	1 cut(s)	232
CviJI	RGCY	7 cut(s)	187, 347, 353, 455, 567, 624, 654
CviKI_1	RGCY	7 cut(s)	187, 347, 353, 455, 567, 624, 654
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
Eco57I	CTGAAG	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	319
FaeI	CATG	1 cut(s)	235
FaiI	YATR	6 cut(s)	81, 233, 390, 616, 618, 658
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FaqI	GGGAC	1 cut(s)	625
FatI	CATG	1 cut(s)	231
FblI	GTMKAC	1 cut(s)	432
Fnu4HI	GCNGC	2 cut(s)	72, 345
FokI	GGATG	2 cut(s)	440, 482
Fsp4HI	GCNGC	2 cut(s)	72, 345
GluI	GCNGC	2 cut(s)	72, 345
GsuI	CTGGAG	1 cut(s)	569
Hin1II	CATG	1 cut(s)	235
HincII	GTYRAC	2 cut(s)	53, 433
HindII	GTYRAC	2 cut(s)	53, 433
HindIII	AAGCTT	1 cut(s)	622
HinfI	GANTC	5 cut(s)	11, 89, 105, 164, 532
HphI	GGTGA	3 cut(s)	9, 452, 491
Hpy166II	GTNNAC	2 cut(s)	53, 433
Hpy188I	TCNGA	5 cut(s)	10, 88, 94, 273, 376
Hpy188III	TCNNGA	1 cut(s)	61
Hpy8I	GTNNAC	2 cut(s)	53, 433
Hpy99I	CGWCG	1 cut(s)	71
HpyCH4III	ACNGT	1 cut(s)	547
HpyCH4IV	ACGT	1 cut(s)	386
HpyCH4V	TGCA	2 cut(s)	116, 335
HpyF10VI	GCNNNNNNNGC	3 cut(s)	341, 350, 512
HpyF3I	CTNAG	1 cut(s)	402
HpySE526I	ACGT	1 cut(s)	386
Hsp92II	CATG	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	63
LmnI	GCTCC	2 cut(s)	341, 452
Lsp1109I	GCAGC	2 cut(s)	58, 356
LweI	GCATC	1 cut(s)	566
MaeII	ACGT	1 cut(s)	386
MaeIII	GTNAC	2 cut(s)	547, 630
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MboII	GAAGA	2 cut(s)	159, 202
MfeI	CAATTG	1 cut(s)	635
MluCI	AATT	4 cut(s)	252, 275, 604, 635
MlyI	GAGTC	2 cut(s)	5, 114
MmeI	TCCRAC	1 cut(s)	405
MnlI	CCTC	4 cut(s)	332, 370, 460, 471
MseI	TTAA	3 cut(s)	26, 177, 626
MspA1I	CMGCKG	1 cut(s)	347
MspR9I	CCNGG	1 cut(s)	321
MunI	CAATTG	1 cut(s)	635
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	3 cut(s)	341, 350, 512
NdeII	GATC	1 cut(s)	63
NlaIII	CATG	1 cut(s)	235
NlaIV	GGNNCC	2 cut(s)	229, 318
PfeI	GAWTC	3 cut(s)	89, 164, 532
PkrI	GCNGC	2 cut(s)	73, 346
PleI	GAGTC	2 cut(s)	5, 113
PpsI	GAGTC	2 cut(s)	5, 113
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	2 cut(s)	229, 318
PstNI	CAGNNNCTG	2 cut(s)	187, 592
PvuII	CAGCTG	1 cut(s)	347
SalI	GTCGAC	1 cut(s)	431
SaqAI	TTAA	3 cut(s)	26, 177, 626
SatI	GCNGC	2 cut(s)	72, 345
Sau3AI	GATC	1 cut(s)	63
SchI	GAGTC	2 cut(s)	5, 114
ScrFI	CCNGG	1 cut(s)	321
SetI	ASST	9 cut(s)	318, 325, 349, 355, 389, 457, 482, 569, 626
SfaNI	GCATC	1 cut(s)	566
SfcI	CTRYAG	1 cut(s)	348
Sse9I	AATT	4 cut(s)	252, 275, 604, 635
SsiI	CCGC	1 cut(s)	225
StyD4I	CCNGG	1 cut(s)	319
TaaI	ACNGT	1 cut(s)	547
TaiI	ACGT	1 cut(s)	389
TaqI	TCGA	4 cut(s)	162, 294, 432, 530
TasI	AATT	4 cut(s)	252, 275, 604, 635
TfiI	GAWTC	3 cut(s)	89, 164, 532
Tru1I	TTAA	3 cut(s)	26, 177, 626
Tru9I	TTAA	3 cut(s)	26, 177, 626
TscAI	CASTG	1 cut(s)	188
TseI	GCWGC	2 cut(s)	71, 344
TspGWI	ACGGA	1 cut(s)	452
TspRI	CASTG	1 cut(s)	188
XapI	RAATTY	2 cut(s)	275, 604
XcmI	CCANNNNNNNNNTGG	1 cut(s)	206
XmiI	GTMKAC	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.