Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Reverse (-)

17346599 .. 17350183

Gene Structure 3585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00396100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTCATCCGACTTGCCACCGTTGACTCACTCCCTCACTCTCCCGAGTCAACTCGCCGCCGAGCCCGTCCGCATCGTCGCCGCCCCCCACATCTCCTCCTCCCGGTTCGGGACAGGAGTGCTATTGATTCGTCTCTCGTTTGCGGTGGCCGAAGAGCATGGAGAGAATAATAGTATGAGTGAGGATCATAGGGTTGAATTGTTGAAGGGTCATATGGTGGTGGTGGTTGTTGAGGTTGGGATTGGTATGGGTGCTGGTATTGTTTCTCCGGCAATGGAGGAAATTCTTGGATTCGGAGTTCAGATCGAGGCTCCTTCGCCGACGAGCTCGCCAAGAGTCAAGAATCCTTCAGCTCGAGGCTCTGTCGCTGAGGGTCCAGAATCCTTCAGATCGAGGTTCCACACTGAGAGTTCAGAATCCTTCAGTTCAGATCGAGGCACCTTCGCTGACGGGCTCGCTGAGAGTCCAGAATCCTTCAGTTCGAGGCTCCGTCACCGAGAGTCCAGAATTGCAGCTCCTTCAAAGACGACATCGCAGCCGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019144 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0080041 GO:0080042

KEGG Pathways

Metabolic & Signaling

ko00051 ko00230 ko00500 ko01100 ko01110 map00051 map00230 map00500 map01100 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

181

Amino Acids

19.2

Weight (kDa)

5.79

Isoelectric Point (pI)

73.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	437
AciI	CCGC	4 cut(s)	57, 70, 81, 143
AclWI	GGATC	1 cut(s)	192
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	1 cut(s)	282
AcuI	CTGAAG	4 cut(s)	333, 370, 406, 460
AfiI	CCNNNNNNNGG	2 cut(s)	102, 108
AgsI	TTSAA	3 cut(s)	197, 205, 522
AloI	GAACNNNNNNTCC	2 cut(s)	282, 314
AluBI	AGCT	3 cut(s)	327, 353, 515
AluI	AGCT	3 cut(s)	327, 353, 515
Alw21I	GWGCWC	1 cut(s)	329
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	1 cut(s)	192
Ama87I	CYCGRG	2 cut(s)	43, 354
AoxI	GGCC	1 cut(s)	147
ApeKI	GCWGC	2 cut(s)	512, 535
ApoI	RAATTY	1 cut(s)	282
AspS9I	GGNCC	1 cut(s)	374
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	1 cut(s)	485
AvaI	CYCGRG	2 cut(s)	43, 354
AvaII	GGWCC	1 cut(s)	374
BanI	GGYRCC	1 cut(s)	437
BanII	GRGCYC	3 cut(s)	66, 329, 456
Bbv12I	GWGCWC	1 cut(s)	329
BbvCI	CCTCAGC	1 cut(s)	369
BbvI	GCAGC	1 cut(s)	524
BceAI	ACGGC	1 cut(s)	523
BcnI	CCSGG	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	137
BisI	GCNGC	4 cut(s)	57, 81, 513, 536
BlsI	GCNGC	4 cut(s)	58, 82, 514, 537
Bme1390I	CCNGG	1 cut(s)	103
Bme18I	GGWCC	1 cut(s)	374
BmeT110I	CYCGRG	2 cut(s)	43, 354
BmgT120I	GGNCC	1 cut(s)	374
BmiI	GGNNCC	5 cut(s)	312, 375, 398, 439, 488
BmrFI	CCNGG	1 cut(s)	103
BmsI	GCATC	1 cut(s)	81
Bpu10I	CCTNAGC	1 cut(s)	369
BpuMI	CCSGG	1 cut(s)	103
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 108
Bse3DI	GCAATG	1 cut(s)	279
BseGI	GGATG	1 cut(s)	5
BseLI	CCNNNNNNNGG	2 cut(s)	102, 108
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	3 cut(s)	360, 396, 450
BseRI	GAGGAG	2 cut(s)	85, 88
BseXI	GCAGC	1 cut(s)	524
BshFI	GGCC	1 cut(s)	149
BshNI	GGYRCC	1 cut(s)	437
BsiHKAI	GWGCWC	1 cut(s)	329
BsiHKCI	CYCGRG	2 cut(s)	43, 354
BsiSI	CCGG	2 cut(s)	103, 269
BslFI	GGGAC	1 cut(s)	124
BslI	CCNNNNNNNGG	2 cut(s)	102, 108
BsmAI	GTCTC	1 cut(s)	137
BsmBI	CGTCTC	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	124
BsnI	GGCC	1 cut(s)	149
BsoBI	CYCGRG	2 cut(s)	43, 354
Bsp1286I	GDGCHC	3 cut(s)	66, 329, 456
Bsp143I	GATC	4 cut(s)	184, 303, 389, 430
BspACI	CCGC	4 cut(s)	57, 70, 81, 143
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	3 cut(s)	361, 397, 451
BspHI	TCATGA	1 cut(s)	542
BspLI	GGNNCC	5 cut(s)	312, 375, 398, 439, 488
BspPI	GGATC	1 cut(s)	192
BspQI	GCTCTTC	1 cut(s)	147
BspT107I	GGYRCC	1 cut(s)	437
BsrDI	GCAATG	1 cut(s)	279
BssMI	GATC	4 cut(s)	184, 303, 389, 430
Bst4CI	ACNGT	1 cut(s)	21
Bst6I	CTCTTC	1 cut(s)	147
BstC8I	GCNNGC	2 cut(s)	329, 456
BstDEI	CTNAG	3 cut(s)	369, 405, 459
BstF5I	GGATG	1 cut(s)	5
BstKTI	GATC	4 cut(s)	187, 306, 392, 433
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	4 cut(s)	184, 303, 389, 430
BstSCI	CCNGG	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	524
BsuRI	GGCC	1 cut(s)	149
BtgZI	GCGATG	1 cut(s)	516
BtsCI	GGATG	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	402
Cac8I	GCNNGC	2 cut(s)	329, 456
CciI	TCATGA	1 cut(s)	542
Cfr13I	GGNCC	1 cut(s)	374
CviAII	CATG	2 cut(s)	158, 543
DdeI	CTNAG	3 cut(s)	369, 405, 459
DpnI	GATC	4 cut(s)	186, 305, 391, 432
DpnII	GATC	4 cut(s)	184, 303, 389, 430
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Ecl136II	GAGCTC	1 cut(s)	327
Eco24I	GRGCYC	3 cut(s)	66, 329, 456
Eco47I	GGWCC	1 cut(s)	374
Eco53kI	GAGCTC	1 cut(s)	327
Eco57I	CTGAAG	4 cut(s)	333, 370, 406, 460
Eco88I	CYCGRG	2 cut(s)	43, 354
EcoICRI	GAGCTC	1 cut(s)	327
EcoT38I	GRGCYC	3 cut(s)	66, 329, 456
Esp3I	CGTCTC	1 cut(s)	137
FaeI	CATG	2 cut(s)	161, 546
FaiI	YATR	7 cut(s)	159, 176, 189, 213, 215, 248, 544
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	2 cut(s)	157, 542
FauNDI	CATATG	1 cut(s)	213
Fnu4HI	GCNGC	4 cut(s)	57, 81, 513, 536
FriOI	GRGCYC	3 cut(s)	66, 329, 456
Fsp4HI	GCNGC	4 cut(s)	57, 81, 513, 536
GluI	GCNGC	4 cut(s)	57, 81, 513, 536
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	2 cut(s)	103, 269
Hin1II	CATG	2 cut(s)	161, 546
HincII	GTYRAC	2 cut(s)	24, 50
HindII	GTYRAC	2 cut(s)	24, 50
HpaII	CCGG	2 cut(s)	103, 269
HphI	GGTGA	1 cut(s)	485
Hpy166II	GTNNAC	2 cut(s)	24, 50
Hpy188I	TCNGA	6 cut(s)	10, 296, 303, 389, 415, 430
Hpy188III	TCNNGA	7 cut(s)	43, 109, 340, 377, 467, 504, 543
Hpy8I	GTNNAC	2 cut(s)	24, 50
Hpy99I	CGWCG	2 cut(s)	80, 325
HpyAV	CCTTC	8 cut(s)	199, 324, 357, 394, 430, 451, 484, 528
HpyCH4III	ACNGT	1 cut(s)	21
HpyCH4V	TGCA	1 cut(s)	512
HpyF3I	CTNAG	3 cut(s)	369, 405, 459
Hsp92II	CATG	2 cut(s)	161, 546
Kzo9I	GATC	4 cut(s)	184, 303, 389, 430
LguI	GCTCTTC	1 cut(s)	147
LmnI	GCTCC	3 cut(s)	316, 492, 520
LpnPI	CCDG	7 cut(s)	99, 116, 240, 282, 390, 480, 517
Lsp1109I	GCAGC	1 cut(s)	524
LweI	GCATC	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	491
MalI	GATC	4 cut(s)	186, 305, 391, 432
MboI	GATC	4 cut(s)	184, 303, 389, 430
MboII	GAAGA	1 cut(s)	164
MhlI	GDGCHC	3 cut(s)	66, 329, 456
MluCI	AATT	3 cut(s)	197, 282, 507
MlyI	GAGTC	5 cut(s)	19, 55, 345, 472, 509
MmeI	TCCRAC	1 cut(s)	33
MspI	CCGG	2 cut(s)	103, 269
MspR9I	CCNGG	1 cut(s)	103
NciI	CCSGG	1 cut(s)	103
NdeI	CATATG	1 cut(s)	213
NdeII	GATC	4 cut(s)	184, 303, 389, 430
NlaIII	CATG	2 cut(s)	161, 546
NlaIV	GGNNCC	5 cut(s)	312, 375, 398, 439, 488
NmeAIII	GCCGAG	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	491
PaeR7I	CTCGAG	1 cut(s)	354
PagI	TCATGA	1 cut(s)	542
PciSI	GCTCTTC	1 cut(s)	147
PfeI	GAWTC	6 cut(s)	127, 291, 343, 380, 416, 470
PkrI	GCNGC	4 cut(s)	58, 82, 514, 537
PleI	GAGTC	5 cut(s)	19, 54, 344, 471, 508
PpsI	GAGTC	5 cut(s)	19, 54, 344, 471, 508
Psp124BI	GAGCTC	1 cut(s)	329
PspN4I	GGNNCC	5 cut(s)	312, 375, 398, 439, 488
PspPI	GGNCC	1 cut(s)	374
PspXI	VCTCGAGB	1 cut(s)	354
SacI	GAGCTC	1 cut(s)	329
SapI	GCTCTTC	1 cut(s)	147
SatI	GCNGC	4 cut(s)	57, 81, 513, 536
Sau3AI	GATC	4 cut(s)	184, 303, 389, 430
Sau96I	GGNCC	1 cut(s)	374
SchI	GAGTC	5 cut(s)	19, 55, 345, 472, 509
ScrFI	CCNGG	1 cut(s)	103
SduI	GDGCHC	3 cut(s)	66, 329, 456
SetI	ASST	6 cut(s)	237, 329, 355, 398, 443, 517
SfaNI	GCATC	1 cut(s)	81
Sfr274I	CTCGAG	1 cut(s)	354
SinI	GGWCC	1 cut(s)	374
SlaI	CTCGAG	1 cut(s)	354
SmlI	CTYRAG	1 cut(s)	354
SmoI	CTYRAG	1 cut(s)	354
Sse9I	AATT	3 cut(s)	197, 282, 507
SsiI	CCGC	4 cut(s)	57, 70, 81, 143
SstI	GAGCTC	1 cut(s)	329
StyD4I	CCNGG	1 cut(s)	101
TaaI	ACNGT	1 cut(s)	21
TaqI	TCGA	5 cut(s)	306, 355, 392, 433, 482
TasI	AATT	3 cut(s)	197, 282, 507
TauI	GCSGC	2 cut(s)	59, 83
TfiI	GAWTC	6 cut(s)	127, 291, 343, 380, 416, 470
TscAI	CASTG	1 cut(s)	409
TseFI	GTSAC	1 cut(s)	491
TseI	GCWGC	2 cut(s)	512, 535
Tsp45I	GTSAC	1 cut(s)	491
TspGWI	ACGGA	1 cut(s)	479
TspRI	CASTG	1 cut(s)	409
VpaK11BI	GGWCC	1 cut(s)	374
XapI	RAATTY	1 cut(s)	282
XhoI	CTCGAG	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.