Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Forward (+)

22732972 .. 22738575

Gene Structure 5604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG136300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGAATGATGCTGACAATGTTATTATGGATGAGTTGGACTTAGAAGCTGCAAGAAATACAGTAAGTGACATTGATGAATGGTTTGTGTATAATGAAGAATATAATAATGAGTCTGGTGCATTGAATGAAGAAGTGATGGCAGCTCCAAATTTGGACAATGTTGTACCACCAGTTAATAATATTGCAGAAGTAAATGAGGAGGAAAATCATGTGCAGCAGCGGTTAGAAGATGACCAGATTAATATTCCAGTACCACCACCACCGCAACACCAGGAACCAGTGGTGCAGTTGAGGAGATCTCAAAGAGTTAGGAGGCGAGATTCTCAGCGTTCATCCTTGATTGTTCAGCGATTTTTGATGTGTTTCCCCCATAAAAAGCCTTTGAGCTCGGCTAATTCTCCACCATCGCTTCTCGATGACGCTGGAAACAGCTCTAACCGATCTACCTTGTTGCTTGCGACCACGTCCCACTCCCTCAGCGCCGGACTCCACCCGATCCTCGCCTCCTCGTCGCGCCTCATTGCTTCTCCCTCGCGCGGTAGCTCCGACGACTCATCTCCAGTGCTCCGCCTCGCCGTCGCCTCCGCAGATCCTTGCACCACCCAGCGCCGCATCTCCGGCTTCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

209

Amino Acids

23.0

Weight (kDa)

4.83

Isoelectric Point (pI)

76.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	514, 535, 537
AciI	CCGC	6 cut(s)	220, 263, 537, 568, 585, 610
AclWI	GGATC	2 cut(s)	490, 584
AcsI	RAATTY	1 cut(s)	148
AfaI	GTAC	2 cut(s)	165, 252
AfiI	CCNNNNNNNGG	1 cut(s)	536
AgsI	TTSAA	1 cut(s)	124
AjiI	CACGTC	1 cut(s)	465
AjnI	CCWGG	1 cut(s)	270
AluBI	AGCT	5 cut(s)	47, 143, 387, 432, 543
AluI	AGCT	5 cut(s)	47, 143, 387, 432, 543
Alw21I	GWGCWC	2 cut(s)	389, 567
AlwI	GGATC	2 cut(s)	490, 584
ApeKI	GCWGC	4 cut(s)	47, 140, 214, 217
ApoI	RAATTY	1 cut(s)	148
AseI	ATTAAT	1 cut(s)	240
AspLEI	GCGC	4 cut(s)	482, 516, 537, 609
BanII	GRGCYC	1 cut(s)	389
Bbv12I	GWGCWC	2 cut(s)	389, 567
BbvCI	CCTCAGC	1 cut(s)	476
BbvI	GCAGC	4 cut(s)	34, 152, 226, 229
BccI	CCATC	2 cut(s)	130, 412
BceAI	ACGGC	1 cut(s)	560
BciT130I	CCWGG	1 cut(s)	272
BfoI	RGCGCY	2 cut(s)	483, 610
BglII	AGATCT	1 cut(s)	296
BisI	GCNGC	5 cut(s)	48, 141, 215, 218, 610
BlsI	GCNGC	5 cut(s)	49, 142, 216, 219, 611
Bme1390I	CCNGG	1 cut(s)	272
BmgBI	CACGTC	1 cut(s)	465
BmiI	GGNNCC	1 cut(s)	276
BmrFI	CCNGG	1 cut(s)	272
BmsI	GCATC	1 cut(s)	621
BplI	GAGNNNNNCTC	2 cut(s)	283, 315
BpmI	CTGGAG	1 cut(s)	543
Bpu10I	CCTNAGC	1 cut(s)	476
Bsc4I	CCNNNNNNNGG	1 cut(s)	536
Bse1I	ACTGG	4 cut(s)	170, 248, 278, 560
Bse3DI	GCAATG	1 cut(s)	519
BseBI	CCWGG	1 cut(s)	272
BseGI	GGATG	2 cut(s)	34, 332
BseLI	CCNNNNNNNGG	1 cut(s)	536
BseMI	GCAATG	1 cut(s)	519
BseMII	CTCAG	2 cut(s)	338, 490
BseNI	ACTGG	4 cut(s)	170, 248, 278, 560
BseRI	GAGGAG	3 cut(s)	212, 307, 496
BseXI	GCAGC	4 cut(s)	34, 152, 226, 229
BseYI	CCCAGC	1 cut(s)	603
BsgI	GTGCAG	2 cut(s)	233, 305
Bsh1236I	CGCG	3 cut(s)	514, 535, 537
BsiHKAI	GWGCWC	2 cut(s)	389, 567
BsiSI	CCGG	2 cut(s)	483, 618
BslFI	GGGAC	1 cut(s)	451
BslI	CCNNNNNNNGG	1 cut(s)	536
BsmFI	GGGAC	1 cut(s)	451
Bsp1286I	GDGCHC	2 cut(s)	389, 567
Bsp143I	GATC	4 cut(s)	296, 440, 495, 589
BspACI	CCGC	6 cut(s)	220, 263, 537, 568, 585, 610
BspCNI	CTCAG	2 cut(s)	337, 489
BspFNI	CGCG	3 cut(s)	514, 535, 537
BspLI	GGNNCC	1 cut(s)	276
BspPI	GGATC	2 cut(s)	490, 584
BsrDI	GCAATG	1 cut(s)	519
BsrI	ACTGG	4 cut(s)	170, 248, 278, 560
BssMI	GATC	4 cut(s)	296, 440, 495, 589
Bst2UI	CCWGG	1 cut(s)	272
Bst4CI	ACNGT	1 cut(s)	61
BstC8I	GCNNGC	1 cut(s)	456
BstDEI	CTNAG	3 cut(s)	40, 324, 476
BstF5I	GGATG	2 cut(s)	34, 332
BstFNI	CGCG	3 cut(s)	514, 535, 537
BstH2I	RGCGCY	2 cut(s)	483, 610
BstHHI	GCGC	4 cut(s)	482, 516, 537, 609
BstKTI	GATC	4 cut(s)	299, 443, 498, 592
BstMBI	GATC	4 cut(s)	296, 440, 495, 589
BstMWI	GCNNNNNNNGC	1 cut(s)	618
BstNI	CCWGG	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	270
BstUI	CGCG	3 cut(s)	514, 535, 537
BstV1I	GCAGC	4 cut(s)	34, 152, 226, 229
BstX2I	RGATCY	2 cut(s)	296, 589
BstYI	RGATCY	2 cut(s)	296, 589
BtgZI	GCGATG	1 cut(s)	390
BtrI	CACGTC	1 cut(s)	465
BtsCI	GGATG	2 cut(s)	34, 332
BtsIMutI	CAGTG	2 cut(s)	285, 567
Cac8I	GCNNGC	1 cut(s)	456
CfoI	GCGC	4 cut(s)	482, 516, 537, 609
CseI	GACGC	1 cut(s)	428
Csp6I	GTAC	2 cut(s)	164, 251
CviAII	CATG	1 cut(s)	209
CviJI	RGCY	8 cut(s)	47, 143, 379, 387, 392, 432, 543, 621
CviKI_1	RGCY	8 cut(s)	47, 143, 379, 387, 392, 432, 543, 621
CviQI	GTAC	2 cut(s)	164, 251
DdeI	CTNAG	3 cut(s)	40, 324, 476
DpnI	GATC	4 cut(s)	298, 442, 497, 591
DpnII	GATC	4 cut(s)	296, 440, 495, 589
EciI	GGCGGA	1 cut(s)	557
Ecl136II	GAGCTC	1 cut(s)	387
Eco24I	GRGCYC	1 cut(s)	389
Eco53kI	GAGCTC	1 cut(s)	387
EcoICRI	GAGCTC	1 cut(s)	387
EcoRII	CCWGG	1 cut(s)	270
EcoT38I	GRGCYC	1 cut(s)	389
FaeI	CATG	1 cut(s)	212
FaiI	YATR	5 cut(s)	26, 90, 102, 210, 372
FaqI	GGGAC	1 cut(s)	451
FatI	CATG	1 cut(s)	208
Fnu4HI	GCNGC	5 cut(s)	48, 141, 215, 218, 610
FokI	GGATG	2 cut(s)	41, 319
FriOI	GRGCYC	1 cut(s)	389
Fsp4HI	GCNGC	5 cut(s)	48, 141, 215, 218, 610
GlaI	GCGC	4 cut(s)	481, 515, 536, 608
GluI	GCNGC	5 cut(s)	48, 141, 215, 218, 610
GsaI	CCCAGC	1 cut(s)	607
GsuI	CTGGAG	1 cut(s)	543
HaeII	RGCGCY	2 cut(s)	483, 610
HapII	CCGG	2 cut(s)	483, 618
HgaI	GACGC	1 cut(s)	428
HhaI	GCGC	4 cut(s)	482, 516, 537, 609
Hin1II	CATG	1 cut(s)	212
Hin6I	GCGC	4 cut(s)	480, 514, 535, 607
HinP1I	GCGC	4 cut(s)	480, 514, 535, 607
HinfI	GANTC	4 cut(s)	110, 320, 486, 551
HpaII	CCGG	2 cut(s)	483, 618
Hpy188I	TCNGA	1 cut(s)	547
Hpy188III	TCNNGA	1 cut(s)	413
Hpy99I	CGWCG	3 cut(s)	514, 551, 581
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4IV	ACGT	1 cut(s)	464
HpyCH4V	TGCA	6 cut(s)	50, 119, 185, 214, 286, 597
HpyF10VI	GCNNNNNNNGC	1 cut(s)	618
HpyF3I	CTNAG	3 cut(s)	40, 324, 476
HpySE526I	ACGT	1 cut(s)	464
Hsp92II	CATG	1 cut(s)	212
HspAI	GCGC	4 cut(s)	480, 514, 535, 607
Kzo9I	GATC	4 cut(s)	296, 440, 495, 589
LmnI	GCTCC	3 cut(s)	148, 548, 570
Lsp1109I	GCAGC	4 cut(s)	34, 152, 226, 229
LweI	GCATC	1 cut(s)	621
MaeII	ACGT	1 cut(s)	464
MaeIII	GTNAC	1 cut(s)	65
MalI	GATC	4 cut(s)	298, 442, 497, 591
MboI	GATC	4 cut(s)	296, 440, 495, 589
MboII	GAAGA	3 cut(s)	107, 140, 239
MflI	RGATCY	2 cut(s)	296, 589
MhlI	GDGCHC	2 cut(s)	389, 567
MluCI	AATT	2 cut(s)	148, 394
MlyI	GAGTC	3 cut(s)	119, 480, 545
MmeI	TCCRAC	2 cut(s)	15, 570
MseI	TTAA	2 cut(s)	174, 240
MspA1I	CMGCKG	1 cut(s)	220
MspI	CCGG	2 cut(s)	483, 618
MspR9I	CCNGG	1 cut(s)	272
MvaI	CCWGG	1 cut(s)	272
MvnI	CGCG	3 cut(s)	514, 535, 537
MwoI	GCNNNNNNNGC	1 cut(s)	618
NdeII	GATC	4 cut(s)	296, 440, 495, 589
NlaIII	CATG	1 cut(s)	212
NlaIV	GGNNCC	1 cut(s)	276
NmeAIII	GCCGAG	1 cut(s)	368
NmuCI	GTSAC	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	320
PflFI	GACNNNGTC	1 cut(s)	463
PkrI	GCNGC	5 cut(s)	49, 142, 216, 219, 611
PleI	GAGTC	3 cut(s)	118, 480, 545
PpsI	GAGTC	3 cut(s)	118, 480, 545
PshBI	ATTAAT	1 cut(s)	240
Psp124BI	GAGCTC	1 cut(s)	389
Psp6I	CCWGG	1 cut(s)	270
PspFI	CCCAGC	1 cut(s)	603
PspGI	CCWGG	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	276
PsuI	RGATCY	2 cut(s)	296, 589
PsyI	GACNNNGTC	1 cut(s)	463
RsaI	GTAC	2 cut(s)	165, 252
RsaNI	GTAC	2 cut(s)	164, 251
SacI	GAGCTC	1 cut(s)	389
SaqAI	TTAA	2 cut(s)	174, 240
SatI	GCNGC	5 cut(s)	48, 141, 215, 218, 610
Sau3AI	GATC	4 cut(s)	296, 440, 495, 589
SchI	GAGTC	3 cut(s)	119, 480, 545
ScrFI	CCNGG	1 cut(s)	272
SduI	GDGCHC	2 cut(s)	389, 567
SetI	ASST	7 cut(s)	49, 145, 389, 434, 449, 467, 545
SfaNI	GCATC	1 cut(s)	621
Sse9I	AATT	2 cut(s)	148, 394
SsiI	CCGC	6 cut(s)	220, 263, 537, 568, 585, 610
SspI	AATATT	2 cut(s)	181, 244
SstI	GAGCTC	1 cut(s)	389
StyD4I	CCNGG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	61
TaiI	ACGT	1 cut(s)	467
TaqI	TCGA	1 cut(s)	414
TasI	AATT	2 cut(s)	148, 394
TauI	GCSGC	1 cut(s)	612
TfiI	GAWTC	1 cut(s)	320
Tru1I	TTAA	2 cut(s)	174, 240
Tru9I	TTAA	2 cut(s)	174, 240
TscAI	CASTG	2 cut(s)	285, 567
TseFI	GTSAC	1 cut(s)	65
TseI	GCWGC	4 cut(s)	47, 140, 214, 217
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	5 cut(s)	17, 90, 108, 141, 321
TspRI	CASTG	2 cut(s)	285, 567
Tth111I	GACNNNGTC	1 cut(s)	463
VspI	ATTAAT	1 cut(s)	240
XapI	RAATTY	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.