Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Forward (+)

669192 .. 672616

Gene Structure 3425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g01080.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGAGAGTGAGACTGGGATTCTACGCGACGGTTCTTTGTATCTGAAACGAGTCCTAATTCAGGGTGTGGATATGTTTGGAAAGAGGATTGGATTTCTGAAGTTTGAAGCAGATGTGATTGATAAAGAAACAGGGAAGAAGGTTCCAGGTATTGTGTTTGCACGCGGACCGGCTGTAGCTGTGCTTATTCTTTTGGAATCTGTGGGCAAGAGTTATGCAGTTCTTACTGAACAGGTTAGAGTCCCCGTTGGAAGGATCATACTGGAGCTGCCTGCTGGGATGTTGGATGATGACAAGGGTGATTTTCTTGGTACTGCAATCCGTGAGGTGGAAGAGGAGACTGGCATATCCCTAAAGCAAGAAGACATGGTGGACCTCACAGCCTTCCTTGACCAATCTACTGGATGCAGAATGTTTCCTTCTCCTGGAGGGTGTGATGAAGAACTCAGTCTCTATCTGTACAGAGGGCAGGTGGATAAAGAGATCATTGAGCGGCTGCAAGGTAAAGAAACAGGCATTCGTGAACATGGAGAGCTGATTAAGGTCCGTGTGCTTCCTTATGAAAAGCTCTGGCGCATGACAGCTGATGCAAAGGTTTTAACAGCTGTTGCGCTCTATGAAATGGCAAAAAGAGAAGGCCTCTTGCCTCCCCTGAAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019144 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0080041 GO:0080042

KEGG Pathways

Metabolic & Signaling

ko00051 ko00230 ko00500 ko01100 ko01110 map00051 map00230 map00500 map01100 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

221

Amino Acids

24.43

Weight (kDa)

5.11

Isoelectric Point (pI)

32.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	55 - 196	3.1e-13	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	460
Acc36I	ACCTGC	1 cut(s)	460
AccBSI	CCGCTC	1 cut(s)	493
AccII	CGCG	2 cut(s)	27, 165
AciI	CCGC	2 cut(s)	165, 493
AclWI	GGATC	1 cut(s)	263
AcuI	CTGAAG	1 cut(s)	119
AfaI	GTAC	2 cut(s)	313, 461
AfiI	CCNNNNNNNGG	4 cut(s)	61, 252, 328, 425
AgsI	TTSAA	1 cut(s)	107
AjnI	CCWGG	2 cut(s)	145, 424
AluBI	AGCT	6 cut(s)	179, 268, 535, 568, 584, 605
AluI	AGCT	6 cut(s)	179, 268, 535, 568, 584, 605
Alw26I	GTCTC	3 cut(s)	5, 332, 455
AlwI	GGATC	1 cut(s)	263
AoxI	GGCC	1 cut(s)	637
ApeKI	GCWGC	2 cut(s)	268, 496
AspLEI	GCGC	2 cut(s)	576, 613
AspS9I	GGNCC	3 cut(s)	167, 373, 544
AsuHPI	GGTGA	1 cut(s)	311
AvaII	GGWCC	3 cut(s)	167, 373, 544
BbsI	GAAGAC	1 cut(s)	369
BbvI	GCAGC	2 cut(s)	255, 483
BciT130I	CCWGG	2 cut(s)	147, 426
BcoDI	GTCTC	3 cut(s)	5, 332, 455
BfmI	CTRYAG	1 cut(s)	174
BfuAI	ACCTGC	1 cut(s)	460
BisI	GCNGC	3 cut(s)	269, 494, 497
BlsI	GCNGC	3 cut(s)	270, 495, 498
Bme1390I	CCNGG	2 cut(s)	147, 426
Bme18I	GGWCC	3 cut(s)	167, 373, 544
BmgT120I	GGNCC	3 cut(s)	167, 373, 544
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	2 cut(s)	147, 426
BmrI	ACTGGG	1 cut(s)	24
BmsI	GCATC	2 cut(s)	395, 577
BmuI	ACTGGG	1 cut(s)	24
BpiI	GAAGAC	1 cut(s)	369
BplI	GAGNNNNNCTC	2 cut(s)	624, 656
BpmI	CTGGAG	2 cut(s)	284, 447
Bsc4I	CCNNNNNNNGG	4 cut(s)	61, 252, 328, 425
Bse118I	RCCGGY	1 cut(s)	169
Bse1I	ACTGG	4 cut(s)	19, 267, 346, 406
BseBI	CCWGG	2 cut(s)	147, 426
BseGI	GGATG	3 cut(s)	285, 292, 410
BseLI	CCNNNNNNNGG	4 cut(s)	61, 252, 328, 425
BseMII	CTCAG	1 cut(s)	460
BseNI	ACTGG	4 cut(s)	19, 267, 346, 406
BseRI	GAGGAG	1 cut(s)	350
BseXI	GCAGC	2 cut(s)	255, 483
BseYI	CCCAGC	1 cut(s)	275
Bsh1236I	CGCG	2 cut(s)	27, 165
BshFI	GGCC	1 cut(s)	639
BsiSI	CCGG	1 cut(s)	170
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	4 cut(s)	61, 252, 328, 425
BsmAI	GTCTC	3 cut(s)	5, 332, 455
BsmFI	GGGAC	1 cut(s)	227
BsmI	GAATGC	1 cut(s)	516
BsnI	GGCC	1 cut(s)	639
Bsp1407I	TGTACA	1 cut(s)	459
Bsp143I	GATC	2 cut(s)	255, 483
BspACI	CCGC	2 cut(s)	165, 493
BspANI	GGCC	1 cut(s)	639
BspCNI	CTCAG	1 cut(s)	459
BspFNI	CGCG	2 cut(s)	27, 165
BspLI	GGNNCC	1 cut(s)	144
BspMI	ACCTGC	1 cut(s)	460
BspPI	GGATC	1 cut(s)	263
BsrBI	CCGCTC	1 cut(s)	493
BsrFI	RCCGGY	1 cut(s)	169
BsrGI	TGTACA	1 cut(s)	459
BsrI	ACTGG	4 cut(s)	19, 267, 346, 406
BssAI	RCCGGY	1 cut(s)	169
BssMI	GATC	2 cut(s)	255, 483
Bst2UI	CCWGG	2 cut(s)	147, 426
Bst4CI	ACNGT	1 cut(s)	32
Bst6I	CTCTTC	1 cut(s)	327
BstAUI	TGTACA	1 cut(s)	459
BstC8I	GCNNGC	2 cut(s)	163, 273
BstDEI	CTNAG	1 cut(s)	446
BstENI	CCTNNNNNAGG	1 cut(s)	59
BstF5I	GGATG	3 cut(s)	285, 292, 410
BstFNI	CGCG	2 cut(s)	27, 165
BstHHI	GCGC	2 cut(s)	576, 613
BstKTI	GATC	2 cut(s)	258, 486
BstMAI	GTCTC	3 cut(s)	5, 332, 455
BstMBI	GATC	2 cut(s)	255, 483
BstNI	CCWGG	2 cut(s)	147, 426
BstSCI	CCNGG	2 cut(s)	145, 424
BstSFI	CTRYAG	1 cut(s)	174
BstUI	CGCG	2 cut(s)	27, 165
BstV1I	GCAGC	2 cut(s)	255, 483
BstV2I	GAAGAC	1 cut(s)	369
BstXI	CCANNNNNNTGG	1 cut(s)	401
BsuRI	GGCC	1 cut(s)	639
BtsCI	GGATG	3 cut(s)	285, 292, 410
BveI	ACCTGC	1 cut(s)	460
Cac8I	GCNNGC	2 cut(s)	163, 273
CfoI	GCGC	2 cut(s)	576, 613
Cfr10I	RCCGGY	1 cut(s)	169
Cfr13I	GGNCC	3 cut(s)	167, 373, 544
CpoI	CGGWCCG	1 cut(s)	167
Csp6I	GTAC	2 cut(s)	312, 460
CspI	CGGWCCG	1 cut(s)	167
CviAII	CATG	4 cut(s)	367, 527, 577, 660
CviQI	GTAC	2 cut(s)	312, 460
DdeI	CTNAG	1 cut(s)	446
DpnI	GATC	2 cut(s)	257, 485
DpnII	GATC	2 cut(s)	255, 483
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco147I	AGGCCT	1 cut(s)	639
Eco47I	GGWCC	3 cut(s)	167, 373, 544
Eco57I	CTGAAG	1 cut(s)	119
EcoNI	CCTNNNNNAGG	1 cut(s)	59
EcoRII	CCWGG	2 cut(s)	145, 424
FaeI	CATG	4 cut(s)	370, 530, 580, 663
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	4 cut(s)	366, 526, 576, 659
Fnu4HI	GCNGC	3 cut(s)	269, 494, 497
FokI	GGATG	3 cut(s)	292, 299, 417
Fsp4HI	GCNGC	3 cut(s)	269, 494, 497
GlaI	GCGC	2 cut(s)	575, 612
GluI	GCNGC	3 cut(s)	269, 494, 497
GsaI	CCCAGC	1 cut(s)	279
GsuI	CTGGAG	2 cut(s)	284, 447
HaeIII	GGCC	1 cut(s)	639
HapII	CCGG	1 cut(s)	170
HhaI	GCGC	2 cut(s)	576, 613
Hin1II	CATG	4 cut(s)	370, 530, 580, 663
Hin6I	GCGC	2 cut(s)	574, 611
HinP1I	GCGC	2 cut(s)	574, 611
HinfI	GANTC	4 cut(s)	19, 51, 197, 240
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	2 cut(s)	373, 524
Hpy188I	TCNGA	2 cut(s)	45, 99
Hpy188III	TCNNGA	1 cut(s)	521
Hpy8I	GTNNAC	2 cut(s)	373, 524
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	5 cut(s)	133, 246, 394, 429, 629
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4V	TGCA	6 cut(s)	161, 218, 317, 408, 499, 590
HpyF3I	CTNAG	1 cut(s)	446
Hsp92II	CATG	4 cut(s)	370, 530, 580, 663
HspAI	GCGC	2 cut(s)	574, 611
Kzo9I	GATC	2 cut(s)	255, 483
LmnI	GCTCC	1 cut(s)	265
Lsp1109I	GCAGC	2 cut(s)	255, 483
LweI	GCATC	2 cut(s)	395, 577
MalI	GATC	2 cut(s)	257, 485
MbiI	CCGCTC	1 cut(s)	493
MboI	GATC	2 cut(s)	255, 483
MboII	GAAGA	4 cut(s)	148, 344, 374, 452
MluCI	AATT	1 cut(s)	57
MlyI	GAGTC	2 cut(s)	60, 249
MmeI	TCCRAC	2 cut(s)	229, 264
MnlI	CCTC	8 cut(s)	78, 319, 328, 386, 422, 458, 650, 657
MseI	TTAA	2 cut(s)	540, 599
MspA1I	CMGCKG	2 cut(s)	584, 605
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	2 cut(s)	147, 426
Mva1269I	GAATGC	1 cut(s)	516
MvaI	CCWGG	2 cut(s)	147, 426
MvnI	CGCG	2 cut(s)	27, 165
NdeII	GATC	2 cut(s)	255, 483
NlaIII	CATG	4 cut(s)	370, 530, 580, 663
NlaIV	GGNNCC	1 cut(s)	144
PaqCI	CACCTGC	1 cut(s)	460
PceI	AGGCCT	1 cut(s)	639
PctI	GAATGC	1 cut(s)	516
PfeI	GAWTC	2 cut(s)	19, 197
PfoI	TCCNGGA	1 cut(s)	424
PkrI	GCNGC	3 cut(s)	270, 495, 498
PleI	GAGTC	2 cut(s)	59, 248
PpsI	GAGTC	2 cut(s)	59, 248
Psp6I	CCWGG	2 cut(s)	145, 424
PspFI	CCCAGC	1 cut(s)	275
PspGI	CCWGG	2 cut(s)	145, 424
PspN4I	GGNNCC	1 cut(s)	144
PspPI	GGNCC	3 cut(s)	167, 373, 544
PvuII	CAGCTG	2 cut(s)	584, 605
RsaI	GTAC	2 cut(s)	313, 461
RsaNI	GTAC	2 cut(s)	312, 460
Rsr2I	CGGWCCG	1 cut(s)	167
RsrII	CGGWCCG	1 cut(s)	167
SaqAI	TTAA	2 cut(s)	540, 599
SatI	GCNGC	3 cut(s)	269, 494, 497
Sau3AI	GATC	2 cut(s)	255, 483
Sau96I	GGNCC	3 cut(s)	167, 373, 544
SchI	GAGTC	2 cut(s)	60, 249
ScrFI	CCNGG	2 cut(s)	147, 426
SfaNI	GCATC	2 cut(s)	395, 577
SfcI	CTRYAG	1 cut(s)	174
SinI	GGWCC	3 cut(s)	167, 373, 544
Sse9I	AATT	1 cut(s)	57
SseBI	AGGCCT	1 cut(s)	639
SsiI	CCGC	2 cut(s)	165, 493
StuI	AGGCCT	1 cut(s)	639
StyD4I	CCNGG	2 cut(s)	145, 424
TaaI	ACNGT	1 cut(s)	32
TasI	AATT	1 cut(s)	57
TatI	WGTACW	1 cut(s)	459
TauI	GCSGC	1 cut(s)	496
TfiI	GAWTC	2 cut(s)	19, 197
Tru1I	TTAA	2 cut(s)	540, 599
Tru9I	TTAA	2 cut(s)	540, 599
TseI	GCWGC	2 cut(s)	268, 496
TspDTI	ATGAA	3 cut(s)	453, 576, 633
TspGWI	ACGGA	2 cut(s)	311, 536
VpaK11BI	GGWCC	3 cut(s)	167, 373, 544
XagI	CCTNNNNNAGG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.