Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003776.1

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Forward (+)

173974 .. 176479

Gene Structure 2506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003776.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atggctactcccaagcttctcggtcctcctgagctccaaaaatcctcacgcaccaccaccgctccgccgccaccccaactcgaatccaaacccggctcccgccaccggcgaacccttcgtggacctgatggtggtgatctcttcgtcagatgtctctctcgtgttctctctctccattgtcggccgctagggggtggatccgtgggttggcttcccctttcgtctagtcccactgagattgtcgctgccccccatatctccaattctgatttcaggtgtgctatcgattcttctttgtttaagcagtggctgaagaacacccagagtgaaaatgggattttacgcggcggttccatgtctcttacacgagttctaattcagcacattggttttctgaaattccaagcagatgtattcgataaacaaacagggaaaaaggttccaggtattgtgtttgcacgaggagcagctgtagctgtgcttatccttttgaagttagaggagatgacgtatgctgttcttactgagcaggatgagtttgatgtagttttcagggcaactaaaggtaaatggcgggcagttgtagtagagatttctagaatgcacaaaacaattcgccctgtacttgttggcacaactagtgttgagcagagtgactcattgtctgagcagttgcaagaagttggcattccccatgaggtcgaggaacagtcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019144 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0080041 GO:0080042

KEGG Pathways

Metabolic & Signaling

ko00051 ko00230 ko00500 ko01100 ko01110 map00051 map00230 map00500 map01100 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

238

Amino Acids

26.09

Weight (kDa)

9.24

Isoelectric Point (pI)

64.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	62
AccII	CGCG	1 cut(s)	345
AciI	CCGC	8 cut(s)	60, 65, 68, 100, 185, 345, 348, 574
AclWI	GGATC	2 cut(s)	192, 205
AcoI	YGGCCR	1 cut(s)	182
AcsI	RAATTY	1 cut(s)	398
AcuI	CTGAAG	1 cut(s)	332
AfaI	GTAC	1 cut(s)	624
AfiI	CCNNNNNNNGG	4 cut(s)	105, 131, 191, 207
AgsI	TTSAA	1 cut(s)	493
AhdI	GACNNNNNGTC	1 cut(s)	661
AhlI	ACTAGT	1 cut(s)	638
AjnI	CCWGG	1 cut(s)	442
AjuI	GAANNNNNNNTTGG	2 cut(s)	254, 286
AluBI	AGCT	4 cut(s)	16, 34, 470, 476
AluI	AGCT	4 cut(s)	16, 34, 470, 476
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	2 cut(s)	158, 363
AlwI	GGATC	2 cut(s)	192, 205
AlwNI	CAGNNNCTG	1 cut(s)	310
AoxI	GGCC	1 cut(s)	182
ApeKI	GCWGC	2 cut(s)	245, 467
ApoI	RAATTY	1 cut(s)	398
AspS9I	GGNCC	2 cut(s)	23, 122
AsuC2I	CCSGG	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	146
AvaII	GGWCC	2 cut(s)	23, 122
BamHI	GGATCC	1 cut(s)	197
BanII	GRGCYC	1 cut(s)	36
BauI	CACGAG	3 cut(s)	159, 366, 459
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	2 cut(s)	232, 479
BccI	CCATC	1 cut(s)	122
BciT130I	CCWGG	1 cut(s)	444
BcnI	CCSGG	1 cut(s)	93
BcoDI	GTCTC	2 cut(s)	158, 363
BcuI	ACTAGT	1 cut(s)	638
BfaI	CTAG	4 cut(s)	188, 225, 597, 639
BfmI	CTRYAG	1 cut(s)	471
BisI	GCNGC	5 cut(s)	68, 185, 246, 346, 468
BlsI	GCNGC	5 cut(s)	69, 186, 247, 347, 469
Bme1390I	CCNGG	2 cut(s)	93, 444
Bme18I	GGWCC	2 cut(s)	23, 122
BmeRI	GACNNNNNGTC	1 cut(s)	661
BmgT120I	GGNCC	2 cut(s)	23, 122
BmiI	GGNNCC	4 cut(s)	97, 199, 352, 441
BmrFI	CCNGG	2 cut(s)	93, 444
Bpu10I	CCTNAGC	1 cut(s)	30
BpuMI	CCSGG	1 cut(s)	93
Bsa29I	ATCGAT	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	201
BsaXI	ACNNNNNCTCC	6 cut(s)	46, 76, 456, 486, 494, 524
Bsc4I	CCNNNNNNNGG	4 cut(s)	105, 131, 191, 207
Bse118I	RCCGGY	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	444
BseCI	ATCGAT	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	538
BseLI	CCNNNNNNNGG	4 cut(s)	105, 131, 191, 207
BseMII	CTCAG	4 cut(s)	21, 225, 516, 657
BseRI	GAGGAG	2 cut(s)	477, 515
BseX3I	CGGCCG	1 cut(s)	182
BseXI	GCAGC	2 cut(s)	232, 479
Bsh1236I	CGCG	1 cut(s)	345
Bsh1285I	CGRYCG	1 cut(s)	185
BshFI	GGCC	1 cut(s)	184
BshVI	ATCGAT	1 cut(s)	285
BsiEI	CGRYCG	1 cut(s)	185
BsiHKAI	GWGCWC	1 cut(s)	36
BsiSI	CCGG	2 cut(s)	93, 106
BslFI	GGGAC	1 cut(s)	213
BslI	CCNNNNNNNGG	4 cut(s)	105, 131, 191, 207
BsmAI	GTCTC	2 cut(s)	158, 363
BsmFI	GGGAC	1 cut(s)	213
BsmI	GAATGC	2 cut(s)	606, 687
BsnI	GGCC	1 cut(s)	184
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	2 cut(s)	136, 197
BspACI	CCGC	8 cut(s)	60, 65, 68, 100, 185, 345, 348, 574
BspANI	GGCC	1 cut(s)	184
BspCNI	CTCAG	4 cut(s)	22, 226, 517, 658
BspDI	ATCGAT	1 cut(s)	285
BspFNI	CGCG	1 cut(s)	345
BspLI	GGNNCC	4 cut(s)	97, 199, 352, 441
BspPI	GGATC	2 cut(s)	192, 205
BsrBI	CCGCTC	1 cut(s)	62
BsrFI	RCCGGY	1 cut(s)	105
BssAI	RCCGGY	1 cut(s)	105
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	2 cut(s)	136, 197
BssSI	CACGAG	3 cut(s)	159, 366, 459
Bst2BI	CACGAG	3 cut(s)	159, 366, 459
Bst2UI	CCWGG	1 cut(s)	444
Bst4CI	ACNGT	1 cut(s)	711
Bst6I	CTCTTC	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	576
BstDEI	CTNAG	4 cut(s)	30, 234, 525, 666
BstDSI	CCRYGG	1 cut(s)	201
BstF5I	GGATG	1 cut(s)	538
BstFNI	CGCG	1 cut(s)	345
BstKTI	GATC	2 cut(s)	139, 200
BstMAI	GTCTC	2 cut(s)	158, 363
BstMBI	GATC	2 cut(s)	136, 197
BstMCI	CGRYCG	1 cut(s)	185
BstMWI	GCNNNNNNNGC	2 cut(s)	464, 473
BstNI	CCWGG	1 cut(s)	444
BstSCI	CCNGG	2 cut(s)	91, 442
BstSFI	CTRYAG	1 cut(s)	471
BstUI	CGCG	1 cut(s)	345
BstV1I	GCAGC	2 cut(s)	232, 479
BstX2I	RGATCY	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	197
BstZI	CGGCCG	1 cut(s)	182
Bsu15I	ATCGAT	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	184
BsuTUI	ATCGAT	1 cut(s)	285
BtgI	CCRYGG	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	538
BtsI	GCAGTG	1 cut(s)	311
BtsIMutI	CAGTG	2 cut(s)	231, 311
Cac8I	GCNNGC	1 cut(s)	576
CaiI	CAGNNNCTG	1 cut(s)	310
Cfr10I	RCCGGY	1 cut(s)	105
Cfr13I	GGNCC	2 cut(s)	23, 122
ClaI	ATCGAT	1 cut(s)	285
Csp6I	GTAC	1 cut(s)	623
CspCI	CAANNNNNGTGG	2 cut(s)	220, 255
CviAII	CATG	2 cut(s)	355, 695
CviJI	RGCY	9 cut(s)	5, 16, 34, 96, 184, 211, 310, 470, 476
CviKI_1	RGCY	9 cut(s)	5, 16, 34, 96, 184, 211, 310, 470, 476
CviQI	GTAC	1 cut(s)	623
DdeI	CTNAG	4 cut(s)	30, 234, 525, 666
DpnI	GATC	2 cut(s)	138, 199
DpnII	GATC	2 cut(s)	136, 197
DriI	GACNNNNNGTC	1 cut(s)	661
EaeI	YGGCCR	1 cut(s)	182
EagI	CGGCCG	1 cut(s)	182
Eam1104I	CTCTTC	1 cut(s)	146
Eam1105I	GACNNNNNGTC	1 cut(s)	661
EarI	CTCTTC	1 cut(s)	146
EciI	GGCGGA	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	34
EclXI	CGGCCG	1 cut(s)	182
Eco24I	GRGCYC	1 cut(s)	36
Eco47I	GGWCC	2 cut(s)	23, 122
Eco52I	CGGCCG	1 cut(s)	182
Eco53kI	GAGCTC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	332
EcoICRI	GAGCTC	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	442
EcoT38I	GRGCYC	1 cut(s)	36
FaeI	CATG	2 cut(s)	358, 698
FaiI	YATR	5 cut(s)	255, 356, 513, 696, 715
FaqI	GGGAC	1 cut(s)	213
FatI	CATG	2 cut(s)	354, 694
FauI	CCCGC	2 cut(s)	107, 567
Fnu4HI	GCNGC	5 cut(s)	68, 185, 246, 346, 468
FokI	GGATG	1 cut(s)	545
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	5 cut(s)	68, 185, 246, 346, 468
FspBI	CTAG	4 cut(s)	188, 225, 597, 639
GluI	GCNGC	5 cut(s)	68, 185, 246, 346, 468
HaeIII	GGCC	1 cut(s)	184
HapII	CCGG	2 cut(s)	93, 106
Hin1II	CATG	2 cut(s)	358, 698
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	3 cut(s)	83, 287, 656
HpaII	CCGG	2 cut(s)	93, 106
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	1 cut(s)	122
Hpy188I	TCNGA	4 cut(s)	149, 268, 396, 667
Hpy188III	TCNNGA	2 cut(s)	29, 597
Hpy8I	GTNNAC	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	125
HpyCH4III	ACNGT	1 cut(s)	711
HpyCH4IV	ACGT	1 cut(s)	509
HpyCH4V	TGCA	3 cut(s)	458, 604, 676
HpyF10VI	GCNNNNNNNGC	2 cut(s)	464, 473
HpyF3I	CTNAG	4 cut(s)	30, 234, 525, 666
HpySE526I	ACGT	1 cut(s)	509
Hsp92II	CATG	2 cut(s)	358, 698
Kzo9I	GATC	2 cut(s)	136, 197
LmnI	GCTCC	4 cut(s)	39, 67, 101, 464
Lsp1109I	GCAGC	2 cut(s)	232, 479
MaeI	CTAG	4 cut(s)	188, 225, 597, 639
MaeII	ACGT	1 cut(s)	509
MaeIII	GTNAC	1 cut(s)	653
MalI	GATC	2 cut(s)	138, 199
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	2 cut(s)	136, 197
MboII	GAAGA	3 cut(s)	133, 282, 325
MflI	RGATCY	1 cut(s)	197
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	4 cut(s)	262, 375, 398, 612
MlyI	GAGTC	1 cut(s)	650
MnlI	CCTC	6 cut(s)	36, 55, 455, 493, 691, 697
MseI	TTAA	1 cut(s)	300
MspA1I	CMGCKG	1 cut(s)	470
MspI	CCGG	2 cut(s)	93, 106
MspR9I	CCNGG	2 cut(s)	93, 444
Mva1269I	GAATGC	2 cut(s)	606, 687
MvaI	CCWGG	1 cut(s)	444
MvnI	CGCG	1 cut(s)	345
MwoI	GCNNNNNNNGC	2 cut(s)	464, 473
NciI	CCSGG	1 cut(s)	93
NdeII	GATC	2 cut(s)	136, 197
NlaIII	CATG	2 cut(s)	358, 698
NlaIV	GGNNCC	4 cut(s)	97, 199, 352, 441
NmuCI	GTSAC	1 cut(s)	653
PctI	GAATGC	2 cut(s)	606, 687
PfeI	GAWTC	2 cut(s)	83, 287
PkrI	GCNGC	5 cut(s)	69, 186, 247, 347, 469
PleI	GAGTC	1 cut(s)	650
PpsI	GAGTC	1 cut(s)	650
Psp124BI	GAGCTC	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	442
PspN4I	GGNNCC	4 cut(s)	97, 199, 352, 441
PspPI	GGNCC	2 cut(s)	23, 122
PstNI	CAGNNNCTG	1 cut(s)	310
PsuI	RGATCY	1 cut(s)	197
PvuII	CAGCTG	1 cut(s)	470
RsaI	GTAC	1 cut(s)	624
RsaNI	GTAC	1 cut(s)	623
SacI	GAGCTC	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	5 cut(s)	68, 185, 246, 346, 468
Sau3AI	GATC	2 cut(s)	136, 197
Sau96I	GGNCC	2 cut(s)	23, 122
SchI	GAGTC	1 cut(s)	650
ScrFI	CCNGG	2 cut(s)	93, 444
SduI	GDGCHC	1 cut(s)	36
SfcI	CTRYAG	1 cut(s)	471
SgrAI	CRCCGGYG	1 cut(s)	105
SinI	GGWCC	2 cut(s)	23, 122
SpeI	ACTAGT	1 cut(s)	638
Sse9I	AATT	4 cut(s)	262, 375, 398, 612
SsiI	CCGC	8 cut(s)	60, 65, 68, 100, 185, 345, 348, 574
SspMI	CTAG	4 cut(s)	188, 225, 597, 639
SstI	GAGCTC	1 cut(s)	36
StyD4I	CCNGG	2 cut(s)	91, 442
TaaI	ACNGT	1 cut(s)	711
TaiI	ACGT	1 cut(s)	512
TaqI	TCGA	4 cut(s)	81, 285, 417, 702
TaqII	GACCGA	1 cut(s)	11
TasI	AATT	4 cut(s)	262, 375, 398, 612
TatI	WGTACW	1 cut(s)	622
TauI	GCSGC	3 cut(s)	70, 187, 348
TfiI	GAWTC	2 cut(s)	83, 287
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	2 cut(s)	238, 311
TseFI	GTSAC	1 cut(s)	653
TseI	GCWGC	2 cut(s)	245, 467
Tsp45I	GTSAC	1 cut(s)	653
TspGWI	ACGGA	1 cut(s)	190
TspRI	CASTG	2 cut(s)	238, 311
VpaK11BI	GGWCC	2 cut(s)	23, 122
XapI	RAATTY	1 cut(s)	398
XbaI	TCTAGA	1 cut(s)	596
XcmI	CCANNNNNNNNNTGG	1 cut(s)	329
XspI	CTAG	4 cut(s)	188, 225, 597, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.