Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Reverse (-)

29373193 .. 29375608

Gene Structure 2416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0208200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCTAGGCGTTTTGCTCTGTTTCACTCTGCTCTTTTGGTTCCAACTCTGTAAATGTTTCTTTCTTTGGCTCCTATTCTATATTTTATTTGAGATTGATGGTTTTGTTGACATGTATATGCTGATTATATGTAGGGAGAAAGTGATAGTGGTATTGGTTAAGTCAATGAAGAATCCAAGGACTGCTCTTATCAAGACCTCCGAAGTCAATGAAGAATCCAAGGACTGCTCTGATCAAGACCTCAATCATGGCTGGCTTCAGCTGATATCTTCAATGCCTTTGCTTGGATTGCATGATGGGTTTTTGCAACTGTTGCAATTGCTGCTGGAGGCCTCACAATACAAGACGTTTGTTTGTGAAGAAGCAGACAAGGCACTAAGAGCAGTGGTGAAGTATTTGACAACTCTGCCTCTACTTCATAGGCTTAAAGGCTATGTCACCCATGCCCACCTCAAAGTCAGAGCCAAAGCTGCAATATCCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase_Tyr

Protein Analysis

161

Amino Acids

18.6

Weight (kDa)

8.2

Isoelectric Point (pI)

34.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	284
AflIII	ACRYGT	1 cut(s)	111
AgsI	TTSAA	1 cut(s)	273
AluBI	AGCT	2 cut(s)	262, 470
AluI	AGCT	2 cut(s)	262, 470
AoxI	GGCC	1 cut(s)	330
ApeKI	GCWGC	2 cut(s)	322, 470
AsuHPI	GGTGA	2 cut(s)	400, 430
BbvI	GCAGC	2 cut(s)	309, 457
BccI	CCATC	2 cut(s)	92, 290
BclI	TGATCA	1 cut(s)	232
BfaI	CTAG	2 cut(s)	5, 484
BisI	GCNGC	2 cut(s)	323, 471
BlsI	GCNGC	2 cut(s)	324, 472
BmiI	GGNNCC	2 cut(s)	41, 71
BpmI	CTGGAG	1 cut(s)	347
BsaJI	CCNNGG	2 cut(s)	176, 219
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
BseDI	CCNNGG	2 cut(s)	176, 219
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseXI	GCAGC	2 cut(s)	309, 457
BshFI	GGCC	1 cut(s)	332
BslI	CCNNNNNNNGG	1 cut(s)	284
BsnI	GGCC	1 cut(s)	332
Bsp143I	GATC	1 cut(s)	232
BspANI	GGCC	1 cut(s)	332
BspLI	GGNNCC	2 cut(s)	41, 71
BssECI	CCNNGG	2 cut(s)	176, 219
BssMI	GATC	1 cut(s)	232
BssT1I	CCWWGG	2 cut(s)	176, 219
Bst4CI	ACNGT	1 cut(s)	312
BstAPI	GCANNNNNTGC	2 cut(s)	313, 322
BstC8I	GCNNGC	1 cut(s)	254
BstDEI	CTNAG	1 cut(s)	377
BstKTI	GATC	1 cut(s)	235
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	6 cut(s)	289, 313, 322, 371, 380, 470
BstNSI	RCATGY	1 cut(s)	115
BstV1I	GCAGC	2 cut(s)	309, 457
BsuRI	GGCC	1 cut(s)	332
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	1 cut(s)	390
Cac8I	GCNNGC	1 cut(s)	254
CviAII	CATG	4 cut(s)	112, 248, 293, 443
CviJI	RGCY	9 cut(s)	70, 252, 256, 262, 332, 424, 432, 464, 470
CviKI_1	RGCY	9 cut(s)	70, 252, 256, 262, 332, 424, 432, 464, 470
DdeI	CTNAG	1 cut(s)	377
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
Eco130I	CCWWGG	2 cut(s)	176, 219
Eco147I	AGGCCT	1 cut(s)	332
Eco32I	GATATC	1 cut(s)	267
Eco57I	CTGAAG	1 cut(s)	242
EcoRV	GATATC	1 cut(s)	267
EcoT14I	CCWWGG	2 cut(s)	176, 219
ErhI	CCWWGG	2 cut(s)	176, 219
FaeI	CATG	4 cut(s)	115, 251, 296, 446
FatI	CATG	4 cut(s)	111, 247, 292, 442
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	2 cut(s)	323, 471
Fsp4HI	GCNGC	2 cut(s)	323, 471
FspBI	CTAG	2 cut(s)	5, 484
GluI	GCNGC	2 cut(s)	323, 471
GsuI	CTGGAG	1 cut(s)	347
HaeIII	GGCC	1 cut(s)	332
Hin1II	CATG	4 cut(s)	115, 251, 296, 446
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	2 cut(s)	172, 215
HphI	GGTGA	2 cut(s)	400, 430
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	3 cut(s)	202, 232, 461
Hpy188III	TCNNGA	2 cut(s)	193, 236
Hpy8I	GTNNAC	1 cut(s)	109
HpyCH4III	ACNGT	1 cut(s)	312
HpyCH4IV	ACGT	1 cut(s)	347
HpyCH4V	TGCA	4 cut(s)	292, 307, 316, 473
HpyF10VI	GCNNNNNNNGC	6 cut(s)	289, 313, 322, 371, 380, 470
HpyF3I	CTNAG	1 cut(s)	377
HpySE526I	ACGT	1 cut(s)	347
Hsp92II	CATG	4 cut(s)	115, 251, 296, 446
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	1 cut(s)	232
LmnI	GCTCC	1 cut(s)	75
LpnPI	CCDG	2 cut(s)	238, 311
Lsp1109I	GCAGC	2 cut(s)	309, 457
MaeI	CTAG	2 cut(s)	5, 484
MaeII	ACGT	1 cut(s)	347
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	4 cut(s)	181, 224, 261, 371
MfeI	CAATTG	1 cut(s)	317
MluCI	AATT	1 cut(s)	317
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	6 cut(s)	208, 251, 322, 343, 420, 461
MseI	TTAA	2 cut(s)	159, 426
MslI	CAYNNNNRTG	1 cut(s)	116
MspA1I	CMGCKG	1 cut(s)	262
MunI	CAATTG	1 cut(s)	317
MwoI	GCNNNNNNNGC	6 cut(s)	289, 313, 322, 371, 380, 470
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	4 cut(s)	115, 251, 296, 446
NlaIV	GGNNCC	2 cut(s)	41, 71
NmuCI	GTSAC	1 cut(s)	436
NspI	RCATGY	1 cut(s)	115
PceI	AGGCCT	1 cut(s)	332
PciI	ACATGT	1 cut(s)	111
PfeI	GAWTC	2 cut(s)	172, 215
PkrI	GCNGC	2 cut(s)	324, 472
PscI	ACATGT	1 cut(s)	111
PspN4I	GGNNCC	2 cut(s)	41, 71
PvuII	CAGCTG	1 cut(s)	262
RseI	CAYNNNNRTG	1 cut(s)	116
SaqAI	TTAA	2 cut(s)	159, 426
SatI	GCNGC	2 cut(s)	323, 471
Sau3AI	GATC	1 cut(s)	232
SetI	ASST	6 cut(s)	200, 243, 264, 350, 453, 472
SmiMI	CAYNNNNRTG	1 cut(s)	116
Sse9I	AATT	1 cut(s)	317
SseBI	AGGCCT	1 cut(s)	332
SspMI	CTAG	2 cut(s)	5, 484
StuI	AGGCCT	1 cut(s)	332
StyI	CCWWGG	2 cut(s)	176, 219
TaaI	ACNGT	1 cut(s)	312
TaiI	ACGT	1 cut(s)	350
TasI	AATT	1 cut(s)	317
TfiI	GAWTC	2 cut(s)	172, 215
Tru1I	TTAA	2 cut(s)	159, 426
Tru9I	TTAA	2 cut(s)	159, 426
TscAI	CASTG	1 cut(s)	390
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	2 cut(s)	322, 470
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	3 cut(s)	182, 225, 407
TspRI	CASTG	1 cut(s)	390
XceI	RCATGY	1 cut(s)	115
XspI	CTAG	2 cut(s)	5, 484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.