Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Forward (+)

7820448 .. 7821519

Gene Structure 1072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG097600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGCTACTCCCAGGCTTCTCGGTCCTCCTGAGCTCCAAAAACCCTCACGCACCACCACCGCTCCGCCGCCACCCCAACCCGGCTCCAAACCCTCCACCGGCGAACCTTTCGTGGACCTGATGGTGGTGATCTCTTGGAGTGCTAGCGATTCTTCTTTGTTTAAGCAGTGGCTGAAGAACACCCAGAGTGAAAATGGGATTTTACACGGCGGTTCCATGTCTCTTACACAAGTTCTAATTCAGGTTCCAGGTATTGTGTTTGCACGAGGAGCAGCTGTAGCTGTGCTTATCCTTTTGAAGTCAGAGGAGATGACGTATGCTGTTCTTACTGAGCAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019144 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0080041 GO:0080042

KEGG Pathways

Metabolic & Signaling

ko00051 ko00230 ko00500 ko01100 ko01110 map00051 map00230 map00500 map01100 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

113

Amino Acids

12.1

Weight (kDa)

8.09

Isoelectric Point (pI)

50.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	62
AciI	CCGC	4 cut(s)	60, 65, 68, 210
AcuI	CTGAAG	1 cut(s)	194
AfiI	CCNNNNNNNGG	3 cut(s)	80, 98, 124
AgsI	TTSAA	1 cut(s)	298
AjnI	CCWGG	2 cut(s)	11, 247
AluBI	AGCT	3 cut(s)	34, 275, 281
AluI	AGCT	3 cut(s)	34, 275, 281
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	1 cut(s)	225
AlwNI	CAGNNNCTG	1 cut(s)	172
ApeKI	GCWGC	1 cut(s)	272
AspS9I	GGNCC	2 cut(s)	23, 115
AsuC2I	CCSGG	1 cut(s)	81
AsuHPI	GGTGA	1 cut(s)	139
AsuNHI	GCTAGC	1 cut(s)	143
AvaII	GGWCC	2 cut(s)	23, 115
BanII	GRGCYC	1 cut(s)	36
BauI	CACGAG	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	1 cut(s)	284
BccI	CCATC	1 cut(s)	115
BceAI	ACGGC	1 cut(s)	223
BciT130I	CCWGG	2 cut(s)	13, 249
BcnI	CCSGG	1 cut(s)	81
BcoDI	GTCTC	1 cut(s)	225
BfaI	CTAG	1 cut(s)	144
BfmI	CTRYAG	1 cut(s)	276
BisI	GCNGC	2 cut(s)	68, 273
BlsI	GCNGC	2 cut(s)	69, 274
Bme1390I	CCNGG	3 cut(s)	13, 81, 249
Bme18I	GGWCC	2 cut(s)	23, 115
BmgT120I	GGNCC	2 cut(s)	23, 115
BmiI	GGNNCC	3 cut(s)	85, 214, 246
BmrFI	CCNGG	3 cut(s)	13, 81, 249
BmtI	GCTAGC	1 cut(s)	147
Bpu10I	CCTNAGC	1 cut(s)	30
BpuMI	CCSGG	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	11
BsaXI	ACNNNNNCTCC	6 cut(s)	46, 76, 261, 291, 299, 329
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 98, 124
Bse118I	RCCGGY	1 cut(s)	98
BseBI	CCWGG	2 cut(s)	13, 249
BseDI	CCNNGG	1 cut(s)	11
BseLI	CCNNNNNNNGG	3 cut(s)	80, 98, 124
BseMII	CTCAG	2 cut(s)	21, 321
BseRI	GAGGAG	2 cut(s)	282, 320
BseXI	GCAGC	1 cut(s)	284
BsiHKAI	GWGCWC	1 cut(s)	36
BsiSI	CCGG	2 cut(s)	81, 99
BslI	CCNNNNNNNGG	3 cut(s)	80, 98, 124
BsmAI	GTCTC	1 cut(s)	225
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	1 cut(s)	129
BspACI	CCGC	4 cut(s)	60, 65, 68, 210
BspCNI	CTCAG	2 cut(s)	22, 322
BspLI	GGNNCC	3 cut(s)	85, 214, 246
BspOI	GCTAGC	1 cut(s)	147
BsrBI	CCGCTC	1 cut(s)	62
BsrFI	RCCGGY	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	11
BssMI	GATC	1 cut(s)	129
BssSI	CACGAG	1 cut(s)	264
Bst2BI	CACGAG	1 cut(s)	264
Bst2UI	CCWGG	2 cut(s)	13, 249
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	2 cut(s)	30, 330
BstKTI	GATC	1 cut(s)	132
BstMAI	GTCTC	1 cut(s)	225
BstMBI	GATC	1 cut(s)	129
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 278
BstNI	CCWGG	2 cut(s)	13, 249
BstSCI	CCNGG	3 cut(s)	11, 79, 247
BstSFI	CTRYAG	1 cut(s)	276
BstV1I	GCAGC	1 cut(s)	284
BtsI	GCAGTG	1 cut(s)	173
BtsIMutI	CAGTG	1 cut(s)	173
Cac8I	GCNNGC	1 cut(s)	145
CaiI	CAGNNNCTG	1 cut(s)	172
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	2 cut(s)	23, 115
CviAII	CATG	1 cut(s)	217
CviJI	RGCY	7 cut(s)	5, 16, 34, 84, 172, 275, 281
CviKI_1	RGCY	7 cut(s)	5, 16, 34, 84, 172, 275, 281
DdeI	CTNAG	2 cut(s)	30, 330
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
EciI	GGCGGA	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	34
Eco24I	GRGCYC	1 cut(s)	36
Eco47I	GGWCC	2 cut(s)	23, 115
Eco53kI	GAGCTC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	194
EcoICRI	GAGCTC	1 cut(s)	34
EcoRII	CCWGG	2 cut(s)	11, 247
EcoT38I	GRGCYC	1 cut(s)	36
FaeI	CATG	1 cut(s)	220
FaiI	YATR	2 cut(s)	218, 318
FatI	CATG	1 cut(s)	216
Fnu4HI	GCNGC	2 cut(s)	68, 273
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	2 cut(s)	68, 273
FspBI	CTAG	1 cut(s)	144
GluI	GCNGC	2 cut(s)	68, 273
HapII	CCGG	2 cut(s)	81, 99
Hin1II	CATG	1 cut(s)	220
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	2 cut(s)	81, 99
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	1 cut(s)	304
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	1 cut(s)	115
HpyCH4IV	ACGT	1 cut(s)	314
HpyCH4V	TGCA	1 cut(s)	263
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 278
HpyF3I	CTNAG	2 cut(s)	30, 330
HpySE526I	ACGT	1 cut(s)	314
Hsp92II	CATG	1 cut(s)	220
Kzo9I	GATC	1 cut(s)	129
LmnI	GCTCC	4 cut(s)	39, 67, 89, 269
LpnPI	CCDG	9 cut(s)	25, 42, 94, 112, 131, 197, 227, 234, 261
Lsp1109I	GCAGC	1 cut(s)	284
MaeI	CTAG	1 cut(s)	144
MaeII	ACGT	1 cut(s)	314
MalI	GATC	1 cut(s)	131
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	1 cut(s)	129
MboII	GAAGA	2 cut(s)	144, 187
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	1 cut(s)	237
MnlI	CCTC	5 cut(s)	36, 55, 103, 260, 298
MseI	TTAA	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	2 cut(s)	81, 99
MspR9I	CCNGG	3 cut(s)	13, 81, 249
MvaI	CCWGG	2 cut(s)	13, 249
MwoI	GCNNNNNNNGC	2 cut(s)	269, 278
NciI	CCSGG	1 cut(s)	81
NdeII	GATC	1 cut(s)	129
NheI	GCTAGC	1 cut(s)	143
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	3 cut(s)	85, 214, 246
PfeI	GAWTC	1 cut(s)	149
PkrI	GCNGC	2 cut(s)	69, 274
Psp124BI	GAGCTC	1 cut(s)	36
Psp6I	CCWGG	2 cut(s)	11, 247
PspGI	CCWGG	2 cut(s)	11, 247
PspN4I	GGNNCC	3 cut(s)	85, 214, 246
PspPI	GGNCC	2 cut(s)	23, 115
PstNI	CAGNNNCTG	1 cut(s)	172
PvuII	CAGCTG	1 cut(s)	275
SacI	GAGCTC	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	2 cut(s)	68, 273
Sau3AI	GATC	1 cut(s)	129
Sau96I	GGNCC	2 cut(s)	23, 115
ScrFI	CCNGG	3 cut(s)	13, 81, 249
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	8 cut(s)	36, 109, 120, 246, 253, 277, 283, 317
SfcI	CTRYAG	1 cut(s)	276
SgrAI	CRCCGGYG	1 cut(s)	98
SinI	GGWCC	2 cut(s)	23, 115
Sse9I	AATT	1 cut(s)	237
SsiI	CCGC	4 cut(s)	60, 65, 68, 210
SspMI	CTAG	1 cut(s)	144
SstI	GAGCTC	1 cut(s)	36
StyD4I	CCNGG	3 cut(s)	11, 79, 247
TaiI	ACGT	1 cut(s)	317
TaqII	GACCGA	1 cut(s)	11
TasI	AATT	1 cut(s)	237
TauI	GCSGC	1 cut(s)	70
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	1 cut(s)	173
TseI	GCWGC	1 cut(s)	272
TspRI	CASTG	1 cut(s)	173
VpaK11BI	GGWCC	2 cut(s)	23, 115
XcmI	CCANNNNNNNNNTGG	1 cut(s)	191
XspI	CTAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.