Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019284.1

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Reverse (-)

12336 .. 14617

Gene Structure 2282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019284.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

atgattttcaaccggttaaggataggccaccaggctgtctataccaacggagagctctacgcacacgcacaccctataccaacggggaggtctacacacgtgtgcgtagagctccccgttggttgtagcaagcttgttcaagcttccatgtcgttgatcaccagaaccacactcacactccccagaacacgcctcgcccttcgatccttcacctgcaaaacgtcatccgacccgccaccgttgattcgctccctcactctcccgagtcagctcgccgccgagcccgtccagatcgtcgccgccccccacatctcctcctcccagttcaggagcgctattgattcgtctttgtttaagcagtggctgaagaacatggagagtgaaagtgggattctacgcgacggttctttggctctgaaacgagttctaattcagggtgtggatatgtttgaaaagaggattgggtttctgaagtttgaagccgatgtggttgataaagaaacagggaaaaaggttccaggtattgtgtttgcacgcggaccggctgtagctgtgcttatacttttggaatcggagggcaaggcttatgctgttcttactgaacaggttagagtacctgttggaaggatcatactggagttgcctgctggaatgttggatgatgacaagggtgattttctcggcaccgcaatccgtaagcttcttttgataatcaacagtcaagtactaagtgtaagatgcaagttttacaactttaacctaaagctaagtattcttattataacactccaggtggaagaagagactggcatatgcctaaaacaagaagccatggtggacctcacagccttcctcgaccaatctactggatgcggaatatttccttctcctggagggtgtgatgaagaactcagcctctatctgtacagagggcaggtggataaagagcttattgatcagctgcaaggtaaagaaacaggtcttcgtgaccatggagagctgattagggtttgtgtgctcccttatgaaaagctctggcgcatgacagctgatgcaaaggttttaacagccgttgcactctatgaaatggcaaaaagagaagggctcttgcctcccctgaaaacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019144 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0080041 GO:0080042

KEGG Pathways

Metabolic & Signaling

ko00051 ko00230 ko00500 ko01100 ko01110 map00051 map00230 map00500 map01100 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

375

Amino Acids

41.4

Weight (kDa)

8.34

Isoelectric Point (pI)

39.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	782
AarI	CACCTGC	2 cut(s)	221, 925
Acc36I	ACCTGC	2 cut(s)	221, 925
AccB1I	GGYRCC	1 cut(s)	683
AccI	GTMKAC	1 cut(s)	92
AccII	CGCG	2 cut(s)	399, 537
AciI	CCGC	6 cut(s)	233, 276, 300, 537, 687, 873
AclWI	GGATC	2 cut(s)	198, 635
AcuI	CTGAAG	2 cut(s)	386, 491
AcvI	CACGTG	1 cut(s)	100
AfaI	GTAC	3 cut(s)	615, 726, 926
AfeI	AGCGCT	1 cut(s)	334
AfiI	CCNNNNNNNGG	2 cut(s)	327, 890
AflIII	ACRYGT	2 cut(s)	97, 99
AgeI	ACCGGT	1 cut(s)	12
AgsI	TTSAA	4 cut(s)	10, 140, 452, 479
AjnI	CCWGG	4 cut(s)	30, 517, 789, 889
AjuI	GAANNNNNNNTTGG	2 cut(s)	444, 476
AleI	CACNNNNGTG	1 cut(s)	100
Alw21I	GWGCWC	3 cut(s)	57, 114, 1020
Alw26I	GTCTC	1 cut(s)	797
AlwI	GGATC	2 cut(s)	198, 635
AlwNI	CAGNNNCTG	1 cut(s)	364
Ama87I	CYCGRG	1 cut(s)	262
Aor51HI	AGCGCT	1 cut(s)	334
AoxI	GGCC	1 cut(s)	25
ApeKI	GCWGC	1 cut(s)	961
AsiGI	ACCGGT	1 cut(s)	12
AspLEI	GCGC	2 cut(s)	335, 1041
AspS9I	GGNCC	2 cut(s)	539, 838
AsuHPI	GGTGA	3 cut(s)	151, 202, 683
AvaI	CYCGRG	1 cut(s)	262
AvaII	GGWCC	2 cut(s)	539, 838
BanI	GGYRCC	1 cut(s)	683
BanII	GRGCYC	4 cut(s)	57, 114, 285, 1107
BbrPI	CACGTG	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	974
Bbv12I	GWGCWC	3 cut(s)	57, 114, 1020
BbvI	GCAGC	1 cut(s)	948
BceAI	ACGGC	1 cut(s)	1055
BciT130I	CCWGG	4 cut(s)	32, 519, 791, 891
BclI	TGATCA	2 cut(s)	156, 955
BcoDI	GTCTC	1 cut(s)	797
BfmI	CTRYAG	1 cut(s)	546
BfoI	RGCGCY	1 cut(s)	336
BfuAI	ACCTGC	2 cut(s)	221, 925
BisI	GCNGC	3 cut(s)	276, 300, 962
BlsI	GCNGC	3 cut(s)	277, 301, 963
BmcAI	AGTACT	1 cut(s)	726
Bme1390I	CCNGG	4 cut(s)	32, 519, 791, 891
Bme18I	GGWCC	2 cut(s)	539, 838
BmeT110I	CYCGRG	1 cut(s)	262
BmgT120I	GGNCC	2 cut(s)	539, 838
BmiI	GGNNCC	2 cut(s)	516, 685
BmrFI	CCNGG	4 cut(s)	32, 519, 791, 891
BmrI	ACTGGG	1 cut(s)	316
BmsI	GCATC	3 cut(s)	728, 860, 1042
BmuI	ACTGGG	1 cut(s)	316
BpiI	GAAGAC	1 cut(s)	974
BplI	GAGNNNNNCTC	2 cut(s)	1089, 1121
BpmI	CTGGAG	3 cut(s)	656, 773, 912
BsaAI	YACGTR	1 cut(s)	100
BsaJI	CCNNGG	2 cut(s)	831, 991
BsaWI	WCCGGW	1 cut(s)	12
BsaXI	ACNNNNNCTCC	4 cut(s)	162, 192, 299, 329
Bsc4I	CCNNNNNNNGG	2 cut(s)	327, 890
Bse118I	RCCGGY	2 cut(s)	12, 541
Bse1I	ACTGG	4 cut(s)	322, 639, 811, 871
BseBI	CCWGG	4 cut(s)	32, 519, 791, 891
BseDI	CCNNGG	2 cut(s)	831, 991
BseGI	GGATG	3 cut(s)	224, 664, 875
BseLI	CCNNNNNNNGG	2 cut(s)	327, 890
BseMII	CTCAG	1 cut(s)	925
BseNI	ACTGG	4 cut(s)	322, 639, 811, 871
BseRI	GAGGAG	2 cut(s)	304, 307
BseXI	GCAGC	1 cut(s)	948
Bsh1236I	CGCG	2 cut(s)	399, 537
BshFI	GGCC	1 cut(s)	27
BshNI	GGYRCC	1 cut(s)	683
BshTI	ACCGGT	1 cut(s)	12
BsiHKAI	GWGCWC	3 cut(s)	57, 114, 1020
BsiHKCI	CYCGRG	1 cut(s)	262
BsiSI	CCGG	2 cut(s)	13, 542
BslI	CCNNNNNNNGG	2 cut(s)	327, 890
BsmAI	GTCTC	1 cut(s)	797
BsnI	GGCC	1 cut(s)	27
BsoBI	CYCGRG	1 cut(s)	262
Bsp1286I	GDGCHC	5 cut(s)	57, 114, 285, 1020, 1107
Bsp1407I	TGTACA	1 cut(s)	924
Bsp143I	GATC	5 cut(s)	156, 203, 291, 627, 955
Bsp19I	CCATGG	2 cut(s)	831, 991
BspACI	CCGC	6 cut(s)	233, 276, 300, 537, 687, 873
BspANI	GGCC	1 cut(s)	27
BspCNI	CTCAG	1 cut(s)	924
BspFNI	CGCG	2 cut(s)	399, 537
BspLI	GGNNCC	2 cut(s)	516, 685
BspMI	ACCTGC	2 cut(s)	221, 925
BspPI	GGATC	2 cut(s)	198, 635
BspT107I	GGYRCC	1 cut(s)	683
BsrFI	RCCGGY	2 cut(s)	12, 541
BsrGI	TGTACA	1 cut(s)	924
BsrI	ACTGG	4 cut(s)	322, 639, 811, 871
BssAI	RCCGGY	2 cut(s)	12, 541
BssECI	CCNNGG	2 cut(s)	831, 991
BssMI	GATC	5 cut(s)	156, 203, 291, 627, 955
BssT1I	CCWWGG	2 cut(s)	831, 991
Bst2UI	CCWGG	4 cut(s)	32, 519, 791, 891
Bst4CI	ACNGT	3 cut(s)	240, 404, 719
Bst6I	CTCTTC	1 cut(s)	795
BstAUI	TGTACA	1 cut(s)	924
BstBAI	YACGTR	1 cut(s)	100
BstC8I	GCNNGC	4 cut(s)	131, 273, 535, 645
BstDEI	CTNAG	3 cut(s)	728, 767, 911
BstDSI	CCRYGG	2 cut(s)	831, 991
BstF5I	GGATG	3 cut(s)	224, 664, 875
BstFNI	CGCG	2 cut(s)	399, 537
BstH2I	RGCGCY	1 cut(s)	336
BstHHI	GCGC	2 cut(s)	335, 1041
BstKTI	GATC	5 cut(s)	159, 206, 294, 630, 958
BstMAI	GTCTC	1 cut(s)	797
BstMBI	GATC	5 cut(s)	156, 203, 291, 627, 955
BstNI	CCWGG	4 cut(s)	32, 519, 791, 891
BstSCI	CCNGG	4 cut(s)	30, 517, 789, 889
BstSFI	CTRYAG	1 cut(s)	546
BstUI	CGCG	2 cut(s)	399, 537
BstV1I	GCAGC	1 cut(s)	948
BstV2I	GAAGAC	1 cut(s)	974
BstXI	CCANNNNNNTGG	1 cut(s)	866
BsuRI	GGCC	1 cut(s)	27
BtgI	CCRYGG	2 cut(s)	831, 991
BtsCI	GGATG	3 cut(s)	224, 664, 875
BtsI	GCAGTG	1 cut(s)	365
BtsIMutI	CAGTG	1 cut(s)	365
BveI	ACCTGC	2 cut(s)	221, 925
Cac8I	GCNNGC	4 cut(s)	131, 273, 535, 645
CaiI	CAGNNNCTG	1 cut(s)	364
CfoI	GCGC	2 cut(s)	335, 1041
Cfr10I	RCCGGY	2 cut(s)	12, 541
Cfr13I	GGNCC	2 cut(s)	539, 838
CpoI	CGGWCCG	1 cut(s)	539
Csp6I	GTAC	3 cut(s)	614, 725, 925
CspAI	ACCGGT	1 cut(s)	12
CspI	CGGWCCG	1 cut(s)	539
CviAII	CATG	6 cut(s)	148, 373, 832, 992, 1042, 1125
CviQI	GTAC	3 cut(s)	614, 725, 925
DdeI	CTNAG	3 cut(s)	728, 767, 911
DpnI	GATC	5 cut(s)	158, 205, 293, 629, 957
DpnII	GATC	5 cut(s)	156, 203, 291, 627, 955
Eam1104I	CTCTTC	1 cut(s)	795
EarI	CTCTTC	1 cut(s)	795
Ecl136II	GAGCTC	2 cut(s)	55, 112
Eco130I	CCWWGG	2 cut(s)	831, 991
Eco24I	GRGCYC	4 cut(s)	57, 114, 285, 1107
Eco47I	GGWCC	2 cut(s)	539, 838
Eco47III	AGCGCT	1 cut(s)	334
Eco53kI	GAGCTC	2 cut(s)	55, 112
Eco57I	CTGAAG	2 cut(s)	386, 491
Eco72I	CACGTG	1 cut(s)	100
Eco88I	CYCGRG	1 cut(s)	262
EcoICRI	GAGCTC	2 cut(s)	55, 112
EcoRII	CCWGG	4 cut(s)	30, 517, 789, 889
EcoT14I	CCWWGG	2 cut(s)	831, 991
EcoT38I	GRGCYC	4 cut(s)	57, 114, 285, 1107
ErhI	CCWWGG	2 cut(s)	831, 991
FaeI	CATG	6 cut(s)	151, 376, 835, 995, 1045, 1128
FatI	CATG	6 cut(s)	147, 372, 831, 991, 1041, 1124
FauI	CCCGC	1 cut(s)	240
FauNDI	CATATG	1 cut(s)	812
FbaI	TGATCA	2 cut(s)	156, 955
FblI	GTMKAC	1 cut(s)	92
Fnu4HI	GCNGC	3 cut(s)	276, 300, 962
FokI	GGATG	3 cut(s)	211, 671, 882
FriOI	GRGCYC	4 cut(s)	57, 114, 285, 1107
Fsp4HI	GCNGC	3 cut(s)	276, 300, 962
GlaI	GCGC	2 cut(s)	334, 1040
GluI	GCNGC	3 cut(s)	276, 300, 962
GsuI	CTGGAG	3 cut(s)	656, 773, 912
HaeII	RGCGCY	1 cut(s)	336
HaeIII	GGCC	1 cut(s)	27
HapII	CCGG	2 cut(s)	13, 542
HhaI	GCGC	2 cut(s)	335, 1041
Hin1II	CATG	6 cut(s)	151, 376, 835, 995, 1045, 1128
Hin6I	GCGC	2 cut(s)	333, 1039
HinP1I	GCGC	2 cut(s)	333, 1039
HindIII	AAGCTT	3 cut(s)	131, 141, 698
HinfI	GANTC	5 cut(s)	244, 265, 341, 391, 569
HpaII	CCGG	2 cut(s)	13, 542
HphI	GGTGA	3 cut(s)	151, 202, 683
Hpy166II	GTNNAC	2 cut(s)	93, 838
Hpy188I	TCNGA	4 cut(s)	229, 417, 471, 574
Hpy188III	TCNNGA	4 cut(s)	262, 289, 328, 986
Hpy8I	GTNNAC	2 cut(s)	93, 838
Hpy99I	CGWCG	2 cut(s)	299, 404
HpyAV	CCTTC	6 cut(s)	209, 217, 618, 859, 894, 1094
HpyCH4III	ACNGT	3 cut(s)	240, 404, 719
HpyCH4IV	ACGT	2 cut(s)	99, 221
HpyCH4V	TGCA	6 cut(s)	216, 533, 741, 964, 1055, 1076
HpyF3I	CTNAG	3 cut(s)	728, 767, 911
HpySE526I	ACGT	2 cut(s)	99, 221
Hsp92II	CATG	6 cut(s)	151, 376, 835, 995, 1045, 1128
HspAI	GCGC	2 cut(s)	333, 1039
Ksp22I	TGATCA	2 cut(s)	156, 955
Kzo9I	GATC	5 cut(s)	156, 203, 291, 627, 955
LmnI	GCTCC	4 cut(s)	117, 254, 330, 1023
Lsp1109I	GCAGC	1 cut(s)	948
LweI	GCATC	3 cut(s)	728, 860, 1042
MaeII	ACGT	2 cut(s)	99, 221
MaeIII	GTNAC	1 cut(s)	986
MalI	GATC	5 cut(s)	158, 205, 293, 629, 957
MboI	GATC	5 cut(s)	156, 203, 291, 627, 955
MboII	GAAGA	5 cut(s)	379, 809, 812, 917, 974
MhlI	GDGCHC	5 cut(s)	57, 114, 285, 1020, 1107
MluCI	AATT	1 cut(s)	429
MlyI	GAGTC	1 cut(s)	274
MmeI	TCCRAC	3 cut(s)	252, 601, 636
MseI	TTAA	4 cut(s)	17, 354, 756, 1064
MslI	CAYNNNNRTG	1 cut(s)	100
MspA1I	CMGCKG	2 cut(s)	961, 1049
MspI	CCGG	2 cut(s)	13, 542
MspR9I	CCNGG	4 cut(s)	32, 519, 791, 891
MvaI	CCWGG	4 cut(s)	32, 519, 791, 891
MvnI	CGCG	2 cut(s)	399, 537
NcoI	CCATGG	2 cut(s)	831, 991
NdeI	CATATG	1 cut(s)	812
NdeII	GATC	5 cut(s)	156, 203, 291, 627, 955
NlaIII	CATG	6 cut(s)	151, 376, 835, 995, 1045, 1128
NlaIV	GGNNCC	2 cut(s)	516, 685
NmeAIII	GCCGAG	2 cut(s)	304, 660
NmuCI	GTSAC	1 cut(s)	986
OliI	CACNNNNGTG	1 cut(s)	100
PaqCI	CACCTGC	2 cut(s)	221, 925
PfeI	GAWTC	4 cut(s)	244, 341, 391, 569
PfoI	TCCNGGA	1 cut(s)	889
PinAI	ACCGGT	1 cut(s)	12
PkrI	GCNGC	3 cut(s)	277, 301, 963
PleI	GAGTC	1 cut(s)	273
PmaCI	CACGTG	1 cut(s)	100
PmlI	CACGTG	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	273
Ppu21I	YACGTR	1 cut(s)	100
PsiI	TTATAA	1 cut(s)	782
Psp124BI	GAGCTC	2 cut(s)	57, 114
Psp6I	CCWGG	4 cut(s)	30, 517, 789, 889
PspCI	CACGTG	1 cut(s)	100
PspGI	CCWGG	4 cut(s)	30, 517, 789, 889
PspN4I	GGNNCC	2 cut(s)	516, 685
PspPI	GGNCC	2 cut(s)	539, 838
PstNI	CAGNNNCTG	1 cut(s)	364
PvuII	CAGCTG	2 cut(s)	961, 1049
RsaI	GTAC	3 cut(s)	615, 726, 926
RsaNI	GTAC	3 cut(s)	614, 725, 925
RseI	CAYNNNNRTG	1 cut(s)	100
Rsr2I	CGGWCCG	1 cut(s)	539
RsrII	CGGWCCG	1 cut(s)	539
SacI	GAGCTC	2 cut(s)	57, 114
SaqAI	TTAA	4 cut(s)	17, 354, 756, 1064
SatI	GCNGC	3 cut(s)	276, 300, 962
Sau3AI	GATC	5 cut(s)	156, 203, 291, 627, 955
Sau96I	GGNCC	2 cut(s)	539, 838
ScaI	AGTACT	1 cut(s)	726
SchI	GAGTC	1 cut(s)	274
ScrFI	CCNGG	4 cut(s)	32, 519, 791, 891
SduI	GDGCHC	5 cut(s)	57, 114, 285, 1020, 1107
SfaNI	GCATC	3 cut(s)	728, 860, 1042
SfcI	CTRYAG	1 cut(s)	546
SinI	GGWCC	2 cut(s)	539, 838
SmiMI	CAYNNNNRTG	1 cut(s)	100
Sse9I	AATT	1 cut(s)	429
SsiI	CCGC	6 cut(s)	233, 276, 300, 537, 687, 873
SspI	AATATT	1 cut(s)	879
SstI	GAGCTC	2 cut(s)	57, 114
StyD4I	CCNGG	4 cut(s)	30, 517, 789, 889
StyI	CCWWGG	2 cut(s)	831, 991
TaaI	ACNGT	3 cut(s)	240, 404, 719
TaiI	ACGT	2 cut(s)	102, 224
TaqI	TCGA	2 cut(s)	202, 855
TasI	AATT	1 cut(s)	429
TatI	WGTACW	2 cut(s)	724, 924
TauI	GCSGC	2 cut(s)	278, 302
TfiI	GAWTC	4 cut(s)	244, 341, 391, 569
Tru1I	TTAA	4 cut(s)	17, 354, 756, 1064
Tru9I	TTAA	4 cut(s)	17, 354, 756, 1064
TscAI	CASTG	1 cut(s)	365
TseFI	GTSAC	1 cut(s)	986
TseI	GCWGC	1 cut(s)	961
Tsp45I	GTSAC	1 cut(s)	986
TspDTI	ATGAA	3 cut(s)	918, 1041, 1098
TspGWI	ACGGA	2 cut(s)	63, 683
TspRI	CASTG	1 cut(s)	365
VpaK11BI	GGWCC	2 cut(s)	539, 838
XmiI	GTMKAC	1 cut(s)	92
ZrmI	AGTACT	1 cut(s)	726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.