Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Reverse (-)

7183650 .. 7185581

Gene Structure 1932 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G11980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCTGGCTTTACTCTTCTTCCCTCGCGGTTACTCGCGTTTCCTTCACGCGCTTTACCTCGTCGCCTTCATCACCACCATGCAAAGCTGATTCTTCGCTGCAAAATGTCTTCTTCTTCTTCCTCTCTTACTCAATCCATCACTCTCCCGAGCCAACCCAACGAGCCTGTCCTTGTCTCTGCAACCGCTGGAATCTCTTCTTCCGATTTCAGGGATGCGATTGATTCATCTCTGTTTAGGAATTGGCTAAGGAATTTGGAATCAGAGAGTGGAATTTTAGCTGATGGTTCAATGACATTAAAGCAAGTTCTTATCCAGGGAGTTGATATGTTTGGCAAAAGAATTGGATTTCTCAAATTCAAAGCGGATATTTTCGACAAGGAAACTGGTCAAAAGGTTCCAGGTATTGTATTTGCACGAGGACCAGCTGTAGCTGTGCTTATTCTCTTGGAGTCAGATGGTGAGACTTATGCGGTTCTCACTGAACAGGTTCGGGTTCCTACTGGGAAGATTGTTCTGGAATTACCTGCTGGAATGTTGGATGATGATAAAGGTGACTTTGTTGGTACTGCAGTTCGCGAGGTCGAAGAGGAGATTGGTATAAAACTGAAAAAAGAAGATATGGTTGATCTCACTGCTTTTCTTGACCCATCTACTGGTTACCGGATCTTCCCTTCTCCTGGAGGCTGTGATGAAGAGATGAGCGTGTTTCTTTACAGAGGACAAGTCGAAAAGGAAACAATTAGACAGTTGCAAGGCAAAGAGACAGGACTCCGTGAACACGGTGAGTTCATCAAAGTCCGACTCATCCCATATAGAGAGCTCTGGCGCAAAACAGCTGACGCTAAGGTTCTTATGAGCATTGGTCTCTATGAAATGGCTCAGCGAGAGGGTCTTGTGTCCAGCCAGAGACTGAAACCCAACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019144 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0080041 GO:0080042

KEGG Pathways

Metabolic & Signaling

ko00051 ko00230 ko00500 ko01100 ko01110 map00051 map00230 map00500 map01100 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

309

Amino Acids

34.25

Weight (kDa)

6.99

Isoelectric Point (pI)

43.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	140 - 279	6.8e-15	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	535
AccB7I	CCANNNNNTGG	1 cut(s)	656
AccII	CGCG	4 cut(s)	28, 38, 51, 579
AciI	CCGC	4 cut(s)	28, 186, 365, 473
AclWI	GGATC	1 cut(s)	674
AcsI	RAATTY	3 cut(s)	253, 273, 356
AfaI	GTAC	1 cut(s)	568
AfiI	CCNNNNNNNGG	3 cut(s)	210, 656, 680
AgsI	TTSAA	2 cut(s)	291, 361
AjnI	CCWGG	3 cut(s)	315, 400, 679
AjuI	GAANNNNNNNTTGG	2 cut(s)	579, 611
AluBI	AGCT	6 cut(s)	88, 281, 428, 434, 823, 839
AluI	AGCT	6 cut(s)	88, 281, 428, 434, 823, 839
Alw21I	GWGCWC	1 cut(s)	825
Alw26I	GTCTC	5 cut(s)	181, 458, 758, 872, 904
AlwI	GGATC	1 cut(s)	674
AlwNI	CAGNNNCTG	1 cut(s)	913
Ama87I	CYCGRG	1 cut(s)	148
ApeKI	GCWGC	1 cut(s)	99
ApoI	RAATTY	3 cut(s)	253, 273, 356
Asp700I	GAANNNNTTC	2 cut(s)	196, 489
AspLEI	GCGC	2 cut(s)	53, 831
AspS9I	GGNCC	1 cut(s)	422
AsuHPI	GGTGA	4 cut(s)	65, 473, 566, 797
AvaI	CYCGRG	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	422
BaeI	ACNNNNGTAYC	2 cut(s)	558, 591
BanII	GRGCYC	1 cut(s)	825
BauI	CACGAG	1 cut(s)	417
BbsI	GAAGAC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	825
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	4 cut(s)	146, 278, 452, 658
BciT130I	CCWGG	3 cut(s)	317, 402, 681
BcoDI	GTCTC	5 cut(s)	181, 458, 758, 872, 904
BfmI	CTRYAG	2 cut(s)	429, 570
BfuAI	ACCTGC	1 cut(s)	535
BisI	GCNGC	1 cut(s)	100
BlpI	GCTNAGC	1 cut(s)	882
BlsI	GCNGC	1 cut(s)	101
Bme1390I	CCNGG	3 cut(s)	317, 402, 681
Bme18I	GGWCC	1 cut(s)	422
BmeT110I	CYCGRG	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	422
BmiI	GGNNCC	2 cut(s)	399, 498
BmrFI	CCNGG	3 cut(s)	317, 402, 681
BmrI	ACTGGG	1 cut(s)	513
BmsI	GCATC	1 cut(s)	205
BmuI	ACTGGG	1 cut(s)	513
BpiI	GAAGAC	1 cut(s)	102
BpmI	CTGGAG	1 cut(s)	702
Bpu10I	CCTNAGC	2 cut(s)	248, 846
Bpu1102I	GCTNAGC	1 cut(s)	882
BsaI	GGTCTC	1 cut(s)	872
BsaJI	CCNNGG	1 cut(s)	316
BsaWI	WCCGGW	1 cut(s)	663
Bsc4I	CCNNNNNNNGG	3 cut(s)	210, 656, 680
Bse1I	ACTGG	3 cut(s)	391, 508, 661
BseBI	CCWGG	3 cut(s)	317, 402, 681
BseDI	CCNNGG	1 cut(s)	316
BseGI	GGATG	3 cut(s)	220, 547, 807
BseLI	CCNNNNNNNGG	3 cut(s)	210, 656, 680
BseMII	CTCAG	1 cut(s)	896
BseNI	ACTGG	3 cut(s)	391, 508, 661
BseRI	GAGGAG	1 cut(s)	605
BseXI	GCAGC	1 cut(s)	86
Bsh1236I	CGCG	4 cut(s)	28, 38, 51, 579
BsiHKAI	GWGCWC	1 cut(s)	825
BsiHKCI	CYCGRG	1 cut(s)	148
BsiSI	CCGG	1 cut(s)	664
BslI	CCNNNNNNNGG	3 cut(s)	210, 656, 680
BsmAI	GTCTC	5 cut(s)	181, 458, 758, 872, 904
Bso31I	GGTCTC	1 cut(s)	872
BsoBI	CYCGRG	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	825
Bsp143I	GATC	2 cut(s)	628, 666
Bsp1720I	GCTNAGC	1 cut(s)	882
Bsp68I	TCGCGA	1 cut(s)	579
BspACI	CCGC	4 cut(s)	28, 186, 365, 473
BspCNI	CTCAG	1 cut(s)	895
BspFNI	CGCG	4 cut(s)	28, 38, 51, 579
BspLI	GGNNCC	2 cut(s)	399, 498
BspMAI	CTGCAG	1 cut(s)	574
BspMI	ACCTGC	1 cut(s)	535
BspPI	GGATC	1 cut(s)	674
BspTNI	GGTCTC	1 cut(s)	872
BsrI	ACTGG	3 cut(s)	391, 508, 661
BssECI	CCNNGG	1 cut(s)	316
BssMI	GATC	2 cut(s)	628, 666
BssSI	CACGAG	1 cut(s)	417
Bst2BI	CACGAG	1 cut(s)	417
Bst2UI	CCWGG	3 cut(s)	317, 402, 681
Bst4CI	ACNGT	2 cut(s)	750, 785
Bst6I	CTCTTC	4 cut(s)	21, 202, 582, 690
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	3 cut(s)	248, 846, 882
BstEII	GGTNACC	1 cut(s)	659
BstF5I	GGATG	3 cut(s)	220, 547, 807
BstFNI	CGCG	4 cut(s)	28, 38, 51, 579
BstHHI	GCGC	2 cut(s)	53, 831
BstKTI	GATC	2 cut(s)	631, 669
BstMAI	GTCTC	5 cut(s)	181, 458, 758, 872, 904
BstMBI	GATC	2 cut(s)	628, 666
BstNI	CCWGG	3 cut(s)	317, 402, 681
BstPI	GGTNACC	1 cut(s)	659
BstSCI	CCNGG	3 cut(s)	315, 400, 679
BstSFI	CTRYAG	2 cut(s)	429, 570
BstUI	CGCG	4 cut(s)	28, 38, 51, 579
BstV1I	GCAGC	1 cut(s)	86
BstV2I	GAAGAC	1 cut(s)	102
BstX2I	RGATCY	1 cut(s)	666
BstYI	RGATCY	1 cut(s)	666
BtsCI	GGATG	3 cut(s)	220, 547, 807
BtsI	GCAGTG	1 cut(s)	633
BtsIMutI	CAGTG	2 cut(s)	480, 633
BtuMI	TCGCGA	1 cut(s)	579
BveI	ACCTGC	1 cut(s)	535
Cac8I	GCNNGC	1 cut(s)	7
CaiI	CAGNNNCTG	1 cut(s)	913
CfoI	GCGC	2 cut(s)	53, 831
Cfr13I	GGNCC	1 cut(s)	422
CseI	GACGC	1 cut(s)	851
Csp6I	GTAC	1 cut(s)	567
CviAII	CATG	1 cut(s)	80
CviQI	GTAC	1 cut(s)	567
DdeI	CTNAG	3 cut(s)	248, 846, 882
DpnI	GATC	2 cut(s)	630, 668
DpnII	GATC	2 cut(s)	628, 666
Eam1104I	CTCTTC	4 cut(s)	21, 202, 582, 690
EarI	CTCTTC	4 cut(s)	21, 202, 582, 690
Ecl136II	GAGCTC	1 cut(s)	823
Eco24I	GRGCYC	1 cut(s)	825
Eco31I	GGTCTC	1 cut(s)	872
Eco47I	GGWCC	1 cut(s)	422
Eco53kI	GAGCTC	1 cut(s)	823
Eco88I	CYCGRG	1 cut(s)	148
Eco91I	GGTNACC	1 cut(s)	659
EcoICRI	GAGCTC	1 cut(s)	823
EcoO65I	GGTNACC	1 cut(s)	659
EcoRII	CCWGG	3 cut(s)	315, 400, 679
EcoT38I	GRGCYC	1 cut(s)	825
FaeI	CATG	1 cut(s)	83
FaiI	YATR	9 cut(s)	81, 329, 471, 602, 623, 814, 816, 857, 873
FatI	CATG	1 cut(s)	79
Fnu4HI	GCNGC	1 cut(s)	100
FokI	GGATG	3 cut(s)	227, 554, 794
FriOI	GRGCYC	1 cut(s)	825
Fsp4HI	GCNGC	1 cut(s)	100
GlaI	GCGC	2 cut(s)	52, 830
GluI	GCNGC	1 cut(s)	100
GsuI	CTGGAG	1 cut(s)	702
HapII	CCGG	1 cut(s)	664
HgaI	GACGC	1 cut(s)	851
HhaI	GCGC	2 cut(s)	53, 831
Hin1II	CATG	1 cut(s)	83
Hin6I	GCGC	2 cut(s)	51, 829
HinP1I	GCGC	2 cut(s)	51, 829
HinfI	GANTC	7 cut(s)	91, 192, 224, 260, 452, 771, 804
HpaII	CCGG	1 cut(s)	664
HphI	GGTGA	4 cut(s)	65, 473, 566, 797
Hpy166II	GTNNAC	1 cut(s)	779
Hpy188I	TCNGA	4 cut(s)	205, 265, 457, 803
Hpy188III	TCNNGA	5 cut(s)	148, 518, 578, 644, 927
Hpy8I	GTNNAC	1 cut(s)	779
Hpy99I	CGWCG	1 cut(s)	66
HpyAV	CCTTC	3 cut(s)	54, 77, 684
HpyCH4III	ACNGT	2 cut(s)	750, 785
HpyCH4V	TGCA	6 cut(s)	83, 102, 182, 416, 572, 754
HpyF3I	CTNAG	3 cut(s)	248, 846, 882
Hsp92II	CATG	1 cut(s)	83
HspAI	GCGC	2 cut(s)	51, 829
Kzo9I	GATC	2 cut(s)	628, 666
Lsp1109I	GCAGC	1 cut(s)	86
LweI	GCATC	1 cut(s)	205
MaeIII	GTNAC	3 cut(s)	30, 554, 659
MalI	GATC	2 cut(s)	630, 668
MboI	GATC	2 cut(s)	628, 666
MflI	RGATCY	1 cut(s)	666
MhlI	GDGCHC	1 cut(s)	825
MluCI	AATT	7 cut(s)	241, 253, 273, 342, 356, 521, 741
MlyI	GAGTC	3 cut(s)	461, 765, 798
MmeI	TCCRAC	2 cut(s)	519, 826
MnlI	CCTC	9 cut(s)	34, 69, 133, 413, 574, 583, 677, 713, 883
MroXI	GAANNNNTTC	2 cut(s)	196, 489
MseI	TTAA	1 cut(s)	299
MslI	CAYNNNNRTG	1 cut(s)	78
MspA1I	CMGCKG	3 cut(s)	188, 428, 839
MspI	CCGG	1 cut(s)	664
MspR9I	CCNGG	3 cut(s)	317, 402, 681
MvaI	CCWGG	3 cut(s)	317, 402, 681
MvnI	CGCG	4 cut(s)	28, 38, 51, 579
NdeII	GATC	2 cut(s)	628, 666
NlaIII	CATG	1 cut(s)	83
NlaIV	GGNNCC	2 cut(s)	399, 498
NmuCI	GTSAC	1 cut(s)	554
NruI	TCGCGA	1 cut(s)	579
PdmI	GAANNNNTTC	2 cut(s)	196, 489
PfeI	GAWTC	4 cut(s)	91, 192, 224, 260
PflMI	CCANNNNNTGG	1 cut(s)	656
PfoI	TCCNGGA	1 cut(s)	679
PkrI	GCNGC	1 cut(s)	101
PleI	GAGTC	3 cut(s)	460, 765, 798
PpsI	GAGTC	3 cut(s)	460, 765, 798
Psp124BI	GAGCTC	1 cut(s)	825
Psp6I	CCWGG	3 cut(s)	315, 400, 679
PspEI	GGTNACC	1 cut(s)	659
PspGI	CCWGG	3 cut(s)	315, 400, 679
PspN4I	GGNNCC	2 cut(s)	399, 498
PspPI	GGNCC	1 cut(s)	422
PstI	CTGCAG	1 cut(s)	574
PstNI	CAGNNNCTG	1 cut(s)	913
PsuI	RGATCY	1 cut(s)	666
PvuII	CAGCTG	2 cut(s)	428, 839
RruI	TCGCGA	1 cut(s)	579
RsaI	GTAC	1 cut(s)	568
RsaNI	GTAC	1 cut(s)	567
RseI	CAYNNNNRTG	1 cut(s)	78
SacI	GAGCTC	1 cut(s)	825
SaqAI	TTAA	1 cut(s)	299
SatI	GCNGC	1 cut(s)	100
Sau3AI	GATC	2 cut(s)	628, 666
Sau96I	GGNCC	1 cut(s)	422
SchI	GAGTC	3 cut(s)	461, 765, 798
ScrFI	CCNGG	3 cut(s)	317, 402, 681
SduI	GDGCHC	1 cut(s)	825
SfaNI	GCATC	1 cut(s)	205
SfcI	CTRYAG	2 cut(s)	429, 570
SinI	GGWCC	1 cut(s)	422
SmiMI	CAYNNNNRTG	1 cut(s)	78
Sse9I	AATT	7 cut(s)	241, 253, 273, 342, 356, 521, 741
SsiI	CCGC	4 cut(s)	28, 186, 365, 473
SstI	GAGCTC	1 cut(s)	825
StyD4I	CCNGG	3 cut(s)	315, 400, 679
TaaI	ACNGT	2 cut(s)	750, 785
TaqI	TCGA	3 cut(s)	375, 585, 729
TasI	AATT	7 cut(s)	241, 253, 273, 342, 356, 521, 741
TfiI	GAWTC	4 cut(s)	91, 192, 224, 260
Tru1I	TTAA	1 cut(s)	299
Tru9I	TTAA	1 cut(s)	299
TscAI	CASTG	2 cut(s)	487, 640
TseFI	GTSAC	1 cut(s)	554
TseI	GCWGC	1 cut(s)	99
Tsp45I	GTSAC	1 cut(s)	554
TspDTI	ATGAA	5 cut(s)	59, 216, 708, 781, 888
TspGWI	ACGGA	1 cut(s)	764
TspRI	CASTG	2 cut(s)	487, 640
Van91I	CCANNNNNTGG	1 cut(s)	656
VpaK11BI	GGWCC	1 cut(s)	422
XapI	RAATTY	3 cut(s)	253, 273, 356
XmnI	GAANNNNTTC	2 cut(s)	196, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.