Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Forward (+)

66366408 .. 66370737

Gene Structure 4330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00387730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGTTTGGGAAGCACATCGGTTTTCTGAAATTCCAAGCAGATGTATTCGATAAACAAACAGGGAAAAAGGTTCTAGGTATTGTGTTTGCACGAGGAGCAGCTGTAGCTGTGCTTATCCTTTTGAAGTCAGAGGAGATGACGTATGCTGTTCTTACTGAGCAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019144 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0080041 GO:0080042

KEGG Pathways

Metabolic & Signaling

ko00051 ko00230 ko00500 ko01100 ko01110 map00051 map00230 map00500 map01100 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

55

Amino Acids

6.09

Weight (kDa)

9.52

Isoelectric Point (pI)

29.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	29
AgsI	TTSAA	1 cut(s)	124
AluBI	AGCT	2 cut(s)	101, 107
AluI	AGCT	2 cut(s)	101, 107
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	1 cut(s)	29
BauI	CACGAG	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	110
BfaI	CTAG	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	102
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
BsaXI	ACNNNNNCTCC	4 cut(s)	87, 117, 125, 155
BseMII	CTCAG	1 cut(s)	147
BseRI	GAGGAG	2 cut(s)	108, 146
BseXI	GCAGC	1 cut(s)	110
BspCNI	CTCAG	1 cut(s)	148
BssSI	CACGAG	1 cut(s)	90
Bst2BI	CACGAG	1 cut(s)	90
BstDEI	CTNAG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 104
BstSFI	CTRYAG	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	110
CviJI	RGCY	2 cut(s)	101, 107
CviKI_1	RGCY	2 cut(s)	101, 107
DdeI	CTNAG	1 cut(s)	156
FaiI	YATR	1 cut(s)	144
Fnu4HI	GCNGC	1 cut(s)	99
Fsp4HI	GCNGC	1 cut(s)	99
FspBI	CTAG	1 cut(s)	74
FspEI	CC	9 cut(s)	3, 45, 46, 47, 53, 60, 78, 116, 131
GluI	GCNGC	1 cut(s)	99
Hpy188I	TCNGA	2 cut(s)	27, 130
HpyCH4IV	ACGT	1 cut(s)	140
HpyCH4V	TGCA	1 cut(s)	89
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 104
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	1 cut(s)	140
LmnI	GCTCC	1 cut(s)	95
LpnPI	CCDG	1 cut(s)	45
Lsp1109I	GCAGC	1 cut(s)	110
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	1 cut(s)	140
MluCI	AATT	1 cut(s)	29
MnlI	CCTC	2 cut(s)	86, 124
MspA1I	CMGCKG	1 cut(s)	101
MwoI	GCNNNNNNNGC	2 cut(s)	95, 104
PkrI	GCNGC	1 cut(s)	100
PvuII	CAGCTG	1 cut(s)	101
SatI	GCNGC	1 cut(s)	99
SetI	ASST	5 cut(s)	72, 79, 103, 109, 143
SfcI	CTRYAG	1 cut(s)	102
SgeI	CNNG	5 cut(s)	47, 72, 86, 102, 104
Sse9I	AATT	1 cut(s)	29
SspMI	CTAG	1 cut(s)	74
TaiI	ACGT	1 cut(s)	143
TaqI	TCGA	1 cut(s)	48
TasI	AATT	1 cut(s)	29
TseI	GCWGC	1 cut(s)	98
XapI	RAATTY	1 cut(s)	29
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.