Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Forward (+)

46798826 .. 46799774

Gene Structure 949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G029930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGTCGTCTGACTCGTCACCACCGTTAACTTACTCCATTACTCTATCCTGTCAACCCGTCCAAATCGTCGCTGCCCCCCATATCTCCGATTCCGATTTCAGGCGATGGCTGAAGAACACCCAGAGTGAAAATGGGATTTTACACGGCGATTCCATGTCTCTTACACGACACATTGGTTTTCTGAAATTCCAAGCAGATGTATTCGATAAACAAACAGGGAAAAAGGTTCCAGGTATTGTGTTTGCACGAGGAGCAGCTGTAGCTGTGCTTATCCTTTTGAAGTCAGAGGAGATGACGTATGTTGTTCTTACTGAGCAGTTGCCTGATGGAATGTTGGATGTTGACAAGGGTGATTTTCTTGGAGCTGCAATCCGTGAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019144 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0080041 GO:0080042

KEGG Pathways

Metabolic & Signaling

ko00051 ko00230 ko00500 ko01100 ko01110 map00051 map00230 map00500 map01100 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

126

Amino Acids

13.78

Weight (kDa)

5.54

Isoelectric Point (pI)

57.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	185
AcuI	CTGAAG	1 cut(s)	131
AfiI	CCNNNNNNNGG	1 cut(s)	99
AgsI	TTSAA	1 cut(s)	280
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	3 cut(s)	257, 263, 365
AluI	AGCT	3 cut(s)	257, 263, 365
Alw26I	GTCTC	1 cut(s)	162
ApeKI	GCWGC	3 cut(s)	71, 254, 365
ApoI	RAATTY	1 cut(s)	185
AsuHPI	GGTGA	2 cut(s)	9, 362
BauI	CACGAG	1 cut(s)	246
BbvI	GCAGC	3 cut(s)	58, 266, 352
BccI	CCATC	2 cut(s)	99, 320
BceAI	ACGGC	1 cut(s)	160
BciT130I	CCWGG	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	162
BfmI	CTRYAG	1 cut(s)	258
BisI	GCNGC	3 cut(s)	72, 255, 366
BlsI	GCNGC	3 cut(s)	73, 256, 367
Bme1390I	CCNGG	1 cut(s)	231
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	1 cut(s)	231
BsaXI	ACNNNNNCTCC	4 cut(s)	243, 273, 281, 311
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	231
BseGI	GGATG	1 cut(s)	343
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	303
BseRI	GAGGAG	2 cut(s)	264, 302
BseXI	GCAGC	3 cut(s)	58, 266, 352
BslI	CCNNNNNNNGG	1 cut(s)	99
BsmAI	GTCTC	1 cut(s)	162
BspCNI	CTCAG	1 cut(s)	304
BspLI	GGNNCC	1 cut(s)	228
BssSI	CACGAG	1 cut(s)	246
Bst2BI	CACGAG	1 cut(s)	246
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	1 cut(s)	24
BstDEI	CTNAG	1 cut(s)	312
BstF5I	GGATG	1 cut(s)	343
BstMAI	GTCTC	1 cut(s)	162
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 260
BstNI	CCWGG	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	229
BstSFI	CTRYAG	1 cut(s)	258
BstV1I	GCAGC	3 cut(s)	58, 266, 352
BtgZI	GCGATG	1 cut(s)	118
BtsCI	GGATG	1 cut(s)	343
CviAII	CATG	1 cut(s)	154
CviJI	RGCY	4 cut(s)	109, 257, 263, 365
CviKI_1	RGCY	4 cut(s)	109, 257, 263, 365
DdeI	CTNAG	1 cut(s)	312
Eco57I	CTGAAG	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	229
FaeI	CATG	1 cut(s)	157
FaiI	YATR	3 cut(s)	81, 155, 300
FatI	CATG	1 cut(s)	153
Fnu4HI	GCNGC	3 cut(s)	72, 255, 366
FokI	GGATG	1 cut(s)	350
Fsp4HI	GCNGC	3 cut(s)	72, 255, 366
GluI	GCNGC	3 cut(s)	72, 255, 366
Hin1II	CATG	1 cut(s)	157
HincII	GTYRAC	3 cut(s)	27, 53, 343
HindII	GTYRAC	3 cut(s)	27, 53, 343
HinfI	GANTC	3 cut(s)	11, 89, 149
HpaI	GTTAAC	1 cut(s)	27
HphI	GGTGA	2 cut(s)	9, 362
Hpy166II	GTNNAC	3 cut(s)	27, 53, 343
Hpy188I	TCNGA	5 cut(s)	10, 88, 94, 183, 286
Hpy8I	GTNNAC	3 cut(s)	27, 53, 343
Hpy99I	CGWCG	1 cut(s)	71
HpyCH4III	ACNGT	1 cut(s)	24
HpyCH4IV	ACGT	1 cut(s)	296
HpyCH4V	TGCA	2 cut(s)	245, 368
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 260
HpyF3I	CTNAG	1 cut(s)	312
HpySE526I	ACGT	1 cut(s)	296
Hsp92II	CATG	1 cut(s)	157
KspAI	GTTAAC	1 cut(s)	27
LmnI	GCTCC	2 cut(s)	251, 362
LpnPI	CCDG	7 cut(s)	61, 85, 134, 201, 216, 243, 336
Lsp1109I	GCAGC	3 cut(s)	58, 266, 352
MaeII	ACGT	1 cut(s)	296
MaeIII	GTNAC	1 cut(s)	15
MboII	GAAGA	1 cut(s)	124
MluCI	AATT	1 cut(s)	185
MlyI	GAGTC	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	2 cut(s)	242, 280
MseI	TTAA	1 cut(s)	26
MspA1I	CMGCKG	1 cut(s)	257
MspR9I	CCNGG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	2 cut(s)	251, 260
NlaIII	CATG	1 cut(s)	157
NlaIV	GGNNCC	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	15
PcsI	WCGNNNNNNNCGW	2 cut(s)	11, 20
PfeI	GAWTC	2 cut(s)	89, 149
PkrI	GCNGC	3 cut(s)	73, 256, 367
PleI	GAGTC	1 cut(s)	5
PpsI	GAGTC	1 cut(s)	5
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	228
PvuII	CAGCTG	1 cut(s)	257
SaqAI	TTAA	1 cut(s)	26
SatI	GCNGC	3 cut(s)	72, 255, 366
SchI	GAGTC	1 cut(s)	5
ScrFI	CCNGG	1 cut(s)	231
SetI	ASST	6 cut(s)	228, 235, 259, 265, 299, 367
SfcI	CTRYAG	1 cut(s)	258
Sse9I	AATT	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	229
TaaI	ACNGT	1 cut(s)	24
TaiI	ACGT	1 cut(s)	299
TaqI	TCGA	1 cut(s)	204
TasI	AATT	1 cut(s)	185
TfiI	GAWTC	2 cut(s)	89, 149
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	3 cut(s)	71, 254, 365
Tsp45I	GTSAC	1 cut(s)	15
TspGWI	ACGGA	1 cut(s)	362
XapI	RAATTY	1 cut(s)	185
XcmI	CCANNNNNNNNNTGG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.