Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Reverse (-)

39407444 .. 39410682

Gene Structure 3239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0280900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGAAGATTGCAAACCTGCATCATCACTATCATCAAAGAAGCCTAAAAAGTTCCCCTCAGAAGGCCCATACCGGCTGTTATATTGTTCAAGTAAGGGTGACAAAGCAGGGGTGGAGCAGGAGTTAGAGAAAGGTGTGGAGCCGAATCTTGGGGACTATGATAAGAGAACAGCTCTTCATTTGGCATCATGTGAAGGCTGCACTGAAATTGTTGTTCTACTTCTTCAGAAAGGTGCTAATGTTAACTGCACAGACCGCTGGGGCCGCACTCCATTGTCTGATGCTCGTAGCTTCGGTCATGATGGGATTTGCAAGATATTGGAAGCTAGGGGTGGAATAGATCCGGTAGGGCTTGACTCTCAGCTTCCATGCTATGAAATTTCTTACAAAGAGGTGAACATGGACGAGGCAACACTTATTGGAGAGGGAGCATATGGTGAAATTTATTTAGTAAAGTGGCGTGGTACAGAAATTGCTGCTAAAACAATTCGTCCCTCCATCGCTTCTAAACCTACTGTGAAGGCTCTCTTTCTGAAGGAACTTGCTTTGTGGCAACAGTTGCGTCACCCTAACATAGTGCAATTCCTTGGGGTCATGAAGCACCCTGATCGCTTGATCTTCCTTACAGAGTTTCTTTGCAATGGAAGTTTGCATGATATATTGAAAAGGAAGGGAAGACTTGATCTGAAAACCGTCGTTGGTTATGCTTTAGATATTGCCAGAGGTATGAATTATCTCCATCAGCATAAACCACGCCCTATAATCCATAGAGATCTTACACCAAGAAATGTGTTACAAGATGAAGCTGGACGCCTCAAGGTCACAGATTTTGGGTTAAGCAAAATCGCCCAACACAATGATGTATCTGGTTATAAAATGACTGGAAGGACAGGCTCATTTCGGTATATGGCACCTGAGGTTTATCGTCGAGAATCATATGGGAAGAGTATCGATATCTTCTCATTTGCTCTATTGGTACATGAGATGTTTCTAGGAGGACCACCAAATCTGGCAGAGGATCCTGAACAAATTGCAGACAAGAGAGCATATGAAGATTCAAGACCACCTCTCTACTCTTATTTGTTCCCTGAACCAATTAGGAAGCTTCTTAAAGAATGCTGGCACCCGAATCCAGATTGCCGACCTACATTCGAAGAGATCATTGTGGAGTTGGAGTCTATTCAAGGGTCTATTCAGGACAGCTTTCATTTCAAGAAAAGATTGGGAACCTGTAATATTAGGTGTGTCATCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019144 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0080041 GO:0080042

KEGG Pathways

Metabolic & Signaling

ko00051 ko00230 ko00500 ko01100 ko01110 map00051 map00230 map00500 map01100 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

418

Amino Acids

47.2

Weight (kDa)

8.33

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	26 - 113	7.7e-12	Ankyrin repeats (3 copies)
Ank_5	PF13857	43 - 92	2.8e-06	Ankyrin repeats (many copies)
Ank	PF00023	55 - 86	1.4e-08	Ankyrin repeat
Pkinase	PF00069	138 - 388	9.6e-52	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	139 - 391	3.6e-53	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	873
Acc36I	ACCTGC	1 cut(s)	25
AccB1I	GGYRCC	2 cut(s)	910, 1122
AciI	CCGC	2 cut(s)	256, 265
AclWI	GGATC	3 cut(s)	335, 1013, 1026
AcsI	RAATTY	2 cut(s)	378, 441
AcuI	CTGAAG	2 cut(s)	209, 554
AcyI	GRCGYC	1 cut(s)	811
AfaI	GTAC	2 cut(s)	466, 978
AfiI	CCNNNNNNNGG	2 cut(s)	62, 149
AgsI	TTSAA	5 cut(s)	90, 664, 1059, 1184, 1213
AluBI	AGCT	7 cut(s)	173, 291, 326, 364, 806, 1105, 1203
AluI	AGCT	7 cut(s)	173, 291, 326, 364, 806, 1105, 1203
AlwI	GGATC	3 cut(s)	335, 1013, 1026
AoxI	GGCC	2 cut(s)	64, 262
ApeKI	GCWGC	2 cut(s)	198, 476
ApoI	RAATTY	2 cut(s)	378, 441
AspS9I	GGNCC	3 cut(s)	65, 262, 998
AsuHPI	GGTGA	4 cut(s)	110, 406, 449, 557
AsuII	TTCGAA	1 cut(s)	1152
AvaII	GGWCC	1 cut(s)	998
AxyI	CCTNAGG	1 cut(s)	915
BamHI	GGATCC	1 cut(s)	1018
BanI	GGYRCC	2 cut(s)	910, 1122
BbsI	GAAGAC	1 cut(s)	682
BbvI	GCAGC	2 cut(s)	185, 463
BccI	CCATC	3 cut(s)	296, 506, 747
BcgI	CGANNNNNNTGC	2 cut(s)	590, 624
BfaI	CTAG	2 cut(s)	327, 992
BfuAI	ACCTGC	1 cut(s)	25
BglII	AGATCT	1 cut(s)	772
BisI	GCNGC	3 cut(s)	199, 265, 477
BlsI	GCNGC	3 cut(s)	200, 266, 478
Bme18I	GGWCC	1 cut(s)	998
BmgT120I	GGNCC	3 cut(s)	65, 262, 998
BmiI	GGNNCC	6 cut(s)	141, 263, 912, 1020, 1124, 1228
BmsI	GCATC	3 cut(s)	29, 194, 271
BpiI	GAAGAC	1 cut(s)	682
BplI	GAGNNNNNCTC	2 cut(s)	157, 189
Bpu14I	TTCGAA	1 cut(s)	1152
BpuEI	CTTGAG	1 cut(s)	800
Bsa29I	ATCGAT	1 cut(s)	951
BsaHI	GRCGYC	1 cut(s)	811
BsaJI	CCNNGG	1 cut(s)	586
BsaWI	WCCGGW	1 cut(s)	343
BsaXI	ACNNNNNCTCC	4 cut(s)	107, 137, 1160, 1190
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 149
Bse118I	RCCGGY	1 cut(s)	72
Bse1I	ACTGG	1 cut(s)	886
Bse21I	CCTNAGG	1 cut(s)	915
Bse3DI	GCAATG	1 cut(s)	646
BseCI	ATCGAT	1 cut(s)	951
BseDI	CCNNGG	1 cut(s)	586
BseLI	CCNNNNNNNGG	2 cut(s)	62, 149
BseMI	GCAATG	1 cut(s)	646
BseMII	CTCAG	3 cut(s)	72, 374, 906
BseNI	ACTGG	1 cut(s)	886
BseXI	GCAGC	2 cut(s)	185, 463
BseYI	CCCAGC	1 cut(s)	258
BsgI	GTGCAG	2 cut(s)	184, 232
BshFI	GGCC	2 cut(s)	66, 264
BshNI	GGYRCC	2 cut(s)	910, 1122
BshVI	ATCGAT	1 cut(s)	951
BsiSI	CCGG	2 cut(s)	73, 344
BslFI	GGGAC	2 cut(s)	167, 477
BslI	CCNNNNNNNGG	2 cut(s)	62, 149
BsmFI	GGGAC	2 cut(s)	167, 477
BsmI	GAATGC	1 cut(s)	1121
BsnI	GGCC	2 cut(s)	66, 264
Bsp119I	TTCGAA	1 cut(s)	1152
Bsp143I	GATC	7 cut(s)	340, 607, 615, 682, 772, 1018, 1158
BspACI	CCGC	2 cut(s)	256, 265
BspANI	GGCC	2 cut(s)	66, 264
BspCNI	CTCAG	3 cut(s)	71, 373, 907
BspDI	ATCGAT	1 cut(s)	951
BspHI	TCATGA	2 cut(s)	298, 594
BspLI	GGNNCC	6 cut(s)	141, 263, 912, 1020, 1124, 1228
BspMI	ACCTGC	1 cut(s)	25
BspPI	GGATC	3 cut(s)	335, 1013, 1026
BspQI	GCTCTTC	1 cut(s)	180
BspT104I	TTCGAA	1 cut(s)	1152
BspT107I	GGYRCC	2 cut(s)	910, 1122
BsrDI	GCAATG	1 cut(s)	646
BsrFI	RCCGGY	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	886
BssAI	RCCGGY	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	586
BssMI	GATC	7 cut(s)	340, 607, 615, 682, 772, 1018, 1158
BssNI	GRCGYC	1 cut(s)	811
BssT1I	CCWWGG	1 cut(s)	586
Bst4CI	ACNGT	3 cut(s)	517, 558, 694
Bst6I	CTCTTC	3 cut(s)	180, 938, 1149
BstACI	GRCGYC	1 cut(s)	811
BstAPI	GCANNNNNTGC	1 cut(s)	559
BstBI	TTCGAA	1 cut(s)	1152
BstC8I	GCNNGC	1 cut(s)	1121
BstDEI	CTNAG	3 cut(s)	58, 360, 915
BstKTI	GATC	7 cut(s)	343, 610, 618, 685, 775, 1021, 1161
BstMBI	GATC	7 cut(s)	340, 607, 615, 682, 772, 1018, 1158
BstMWI	GCNNNNNNNGC	3 cut(s)	255, 264, 559
BstV1I	GCAGC	2 cut(s)	185, 463
BstV2I	GAAGAC	1 cut(s)	682
BstX2I	RGATCY	3 cut(s)	340, 772, 1018
BstYI	RGATCY	3 cut(s)	340, 772, 1018
Bsu15I	ATCGAT	1 cut(s)	951
Bsu36I	CCTNAGG	1 cut(s)	915
BsuRI	GGCC	2 cut(s)	66, 264
BsuTUI	ATCGAT	1 cut(s)	951
BtgZI	GCGATG	1 cut(s)	484
BtsIMutI	CAGTG	1 cut(s)	201
BveI	ACCTGC	1 cut(s)	25
Cac8I	GCNNGC	1 cut(s)	1121
CciI	TCATGA	2 cut(s)	298, 594
Cfr10I	RCCGGY	1 cut(s)	72
Cfr13I	GGNCC	3 cut(s)	65, 262, 998
ClaI	ATCGAT	1 cut(s)	951
CseI	GACGC	2 cut(s)	551, 819
Csp6I	GTAC	2 cut(s)	465, 977
CviAII	CATG	7 cut(s)	189, 299, 369, 400, 595, 653, 980
CviQI	GTAC	2 cut(s)	465, 977
DdeI	CTNAG	3 cut(s)	58, 360, 915
DpnI	GATC	7 cut(s)	342, 609, 617, 684, 774, 1020, 1160
DpnII	GATC	7 cut(s)	340, 607, 615, 682, 772, 1018, 1158
Eam1104I	CTCTTC	3 cut(s)	180, 938, 1149
EarI	CTCTTC	3 cut(s)	180, 938, 1149
Eco130I	CCWWGG	1 cut(s)	586
Eco32I	GATATC	1 cut(s)	955
Eco47I	GGWCC	1 cut(s)	998
Eco57I	CTGAAG	2 cut(s)	209, 554
Eco81I	CCTNAGG	1 cut(s)	915
EcoRV	GATATC	1 cut(s)	955
EcoT14I	CCWWGG	1 cut(s)	586
ErhI	CCWWGG	1 cut(s)	586
FaeI	CATG	7 cut(s)	192, 302, 372, 403, 598, 656, 983
FalI	AAGNNNNNCTT	2 cut(s)	512, 544
FaqI	GGGAC	2 cut(s)	167, 477
FatI	CATG	7 cut(s)	188, 298, 368, 399, 594, 652, 979
FauNDI	CATATG	3 cut(s)	433, 937, 1048
Fnu4HI	GCNGC	3 cut(s)	199, 265, 477
Fsp4HI	GCNGC	3 cut(s)	199, 265, 477
FspBI	CTAG	2 cut(s)	327, 992
GluI	GCNGC	3 cut(s)	199, 265, 477
GsaI	CCCAGC	1 cut(s)	262
HaeIII	GGCC	2 cut(s)	66, 264
HapII	CCGG	2 cut(s)	73, 344
HgaI	GACGC	2 cut(s)	551, 819
Hin1I	GRCGYC	1 cut(s)	811
Hin1II	CATG	7 cut(s)	192, 302, 372, 403, 598, 656, 983
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HindIII	AAGCTT	1 cut(s)	1103
HinfI	GANTC	6 cut(s)	145, 356, 932, 1055, 1129, 1175
HpaI	GTTAAC	1 cut(s)	244
HpaII	CCGG	2 cut(s)	73, 344
HphI	GGTGA	4 cut(s)	110, 406, 449, 557
Hpy166II	GTNNAC	2 cut(s)	244, 397
Hpy188I	TCNGA	5 cut(s)	61, 228, 280, 534, 687
Hpy188III	TCNNGA	8 cut(s)	299, 595, 929, 1022, 1059, 1133, 1196, 1213
Hpy8I	GTNNAC	2 cut(s)	244, 397
Hpy99I	CGWCG	2 cut(s)	698, 930
HpyAV	CCTTC	6 cut(s)	56, 188, 514, 529, 664, 879
HpyCH4III	ACNGT	3 cut(s)	517, 558, 694
HpyCH4V	TGCA	9 cut(s)	12, 20, 201, 249, 312, 580, 639, 652, 1034
HpyF10VI	GCNNNNNNNGC	3 cut(s)	255, 264, 559
HpyF3I	CTNAG	3 cut(s)	58, 360, 915
Hsp92I	GRCGYC	1 cut(s)	811
Hsp92II	CATG	7 cut(s)	192, 302, 372, 403, 598, 656, 983
KspAI	GTTAAC	1 cut(s)	244
Kzo9I	GATC	7 cut(s)	340, 607, 615, 682, 772, 1018, 1158
LguI	GCTCTTC	1 cut(s)	180
LmnI	GCTCC	3 cut(s)	115, 139, 428
Lsp1109I	GCAGC	2 cut(s)	185, 463
LweI	GCATC	3 cut(s)	29, 194, 271
MaeI	CTAG	2 cut(s)	327, 992
MaeIII	GTNAC	4 cut(s)	98, 563, 792, 820
MalI	GATC	7 cut(s)	342, 609, 617, 684, 774, 1020, 1160
MboI	GATC	7 cut(s)	340, 607, 615, 682, 772, 1018, 1158
MboII	GAAGA	9 cut(s)	17, 167, 215, 610, 687, 949, 955, 1064, 1166
MflI	RGATCY	3 cut(s)	340, 772, 1018
MluCI	AATT	9 cut(s)	207, 378, 441, 471, 486, 581, 730, 1029, 1095
MlyI	GAGTC	2 cut(s)	350, 1184
MmeI	TCCRAC	1 cut(s)	1152
MseI	TTAA	4 cut(s)	243, 836, 1110, 1255
MslI	CAYNNNNRTG	1 cut(s)	858
MspA1I	CMGCKG	1 cut(s)	258
MspI	CCGG	2 cut(s)	73, 344
Mva1269I	GAATGC	1 cut(s)	1121
MwoI	GCNNNNNNNGC	3 cut(s)	255, 264, 559
NdeI	CATATG	3 cut(s)	433, 937, 1048
NdeII	GATC	7 cut(s)	340, 607, 615, 682, 772, 1018, 1158
NlaIII	CATG	7 cut(s)	192, 302, 372, 403, 598, 656, 983
NlaIV	GGNNCC	6 cut(s)	141, 263, 912, 1020, 1124, 1228
NmuCI	GTSAC	3 cut(s)	98, 563, 820
NspV	TTCGAA	1 cut(s)	1152
PagI	TCATGA	2 cut(s)	298, 594
PciSI	GCTCTTC	1 cut(s)	180
PctI	GAATGC	1 cut(s)	1121
PfeI	GAWTC	4 cut(s)	145, 932, 1055, 1129
PkrI	GCNGC	3 cut(s)	200, 266, 478
PleI	GAGTC	2 cut(s)	350, 1183
PpsI	GAGTC	2 cut(s)	350, 1183
PsiI	TTATAA	1 cut(s)	873
PspFI	CCCAGC	1 cut(s)	258
PspN4I	GGNNCC	6 cut(s)	141, 263, 912, 1020, 1124, 1228
PspPI	GGNCC	3 cut(s)	65, 262, 998
PsuI	RGATCY	3 cut(s)	340, 772, 1018
RsaI	GTAC	2 cut(s)	466, 978
RsaNI	GTAC	2 cut(s)	465, 977
RseI	CAYNNNNRTG	1 cut(s)	858
SapI	GCTCTTC	1 cut(s)	180
SaqAI	TTAA	4 cut(s)	243, 836, 1110, 1255
SatI	GCNGC	3 cut(s)	199, 265, 477
Sau3AI	GATC	7 cut(s)	340, 607, 615, 682, 772, 1018, 1158
Sau96I	GGNCC	3 cut(s)	65, 262, 998
SchI	GAGTC	2 cut(s)	350, 1184
SfaNI	GCATC	3 cut(s)	29, 194, 271
SfuI	TTCGAA	1 cut(s)	1152
SinI	GGWCC	1 cut(s)	998
SmiMI	CAYNNNNRTG	1 cut(s)	858
SmlI	CTYRAG	1 cut(s)	815
SmoI	CTYRAG	1 cut(s)	815
Sse9I	AATT	9 cut(s)	207, 378, 441, 471, 486, 581, 730, 1029, 1095
SsiI	CCGC	2 cut(s)	256, 265
SspI	AATATT	1 cut(s)	1237
SspMI	CTAG	2 cut(s)	327, 992
StyI	CCWWGG	1 cut(s)	586
TaaI	ACNGT	3 cut(s)	517, 558, 694
TaqI	TCGA	3 cut(s)	928, 951, 1152
TaqII	GACCGA	1 cut(s)	284
TasI	AATT	9 cut(s)	207, 378, 441, 471, 486, 581, 730, 1029, 1095
TauI	GCSGC	1 cut(s)	267
TfiI	GAWTC	4 cut(s)	145, 932, 1055, 1129
Tru1I	TTAA	4 cut(s)	243, 836, 1110, 1255
Tru9I	TTAA	4 cut(s)	243, 836, 1110, 1255
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	3 cut(s)	98, 563, 820
TseI	GCWGC	2 cut(s)	198, 476
Tsp45I	GTSAC	3 cut(s)	98, 563, 820
TspDTI	ATGAA	7 cut(s)	167, 390, 611, 743, 816, 1065, 1196
TspRI	CASTG	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	998
XapI	RAATTY	2 cut(s)	378, 441
XspI	CTAG	2 cut(s)	327, 992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.