Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Reverse (-)

16343363 .. 16346419

Gene Structure 3057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG184200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGCACGACGTGTCGTTTGCAAAACAAAACCATTTTAGGCAACAAACGCACGTGTGCGGAGAGCTCCCCGTTGGTTGTAGCAAGCTTGTTCAAGCTTCCATGTCGTTGATCCCCAGAACCACACTCATACTCCCCAGAACACTCCTCACCCTTCGATCCTTCTCCTGCAAAATGTCATCCGACCCGCCACCGTTGACTCACTCCCTCACTCTCCCGAGTCAACTCGCCGCCGAGCCCGTCCAGATCGTCGCCGCCCCCCACATCTCCTCCTCCCAGTTCAGGAGCGCTATTGATTCGTCTTTGTTTAAGCAGTGGCTGAAGAACATGGAGAGTGAAACTGGGATTCTACGCGACGGTTCTTTGGCTCTGAAACGAGTTCTAATTCAGGGTGTGGATATGTTTGGAAAGAGGATTGGGTTTCTGAAGTTTGAAGCAGATGTGATTGATAAAGAAACAGGGAAAAAGGTTCCAGGTATTGTGTTTGCACGCGGACCGGCTGTAGCTGTGCTTATACTTTTGGAATCGGAGGGCAAGACTTATGCTGTTCTTACTGAACAGGTAGGTCTTCATTTCATTTTGGTGTTTTGGAGTATCTGTTATGACATTATGATGCTTTACTTAAATCTGAAAATCACGTTCATCCTAATTCCTATATTATCACAAAGAGAATTGACGGCATTGTACTTCTATGGAATCAAACCCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019144 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0080041 GO:0080042

KEGG Pathways

Metabolic & Signaling

ko00051 ko00230 ko00500 ko01100 ko01110 map00051 map00230 map00500 map01100 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

235

Amino Acids

26.26

Weight (kDa)

9.17

Isoelectric Point (pI)

50.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	351, 489
AciI	CCGC	5 cut(s)	57, 185, 228, 252, 489
AclWI	GGATC	2 cut(s)	103, 150
AcuI	CTGAAG	2 cut(s)	338, 443
AcvI	CACGTG	1 cut(s)	52
AdeI	CACNNNGTG	1 cut(s)	10
AfaI	GTAC	1 cut(s)	683
AfeI	AGCGCT	1 cut(s)	286
AfiI	CCNNNNNNNGG	1 cut(s)	279
AflIII	ACRYGT	2 cut(s)	9, 51
AgsI	TTSAA	2 cut(s)	92, 431
AjiI	CACGTC	1 cut(s)	10
AjnI	CCWGG	1 cut(s)	469
AluBI	AGCT	4 cut(s)	64, 85, 95, 503
AluI	AGCT	4 cut(s)	64, 85, 95, 503
Alw21I	GWGCWC	1 cut(s)	66
AlwI	GGATC	2 cut(s)	103, 150
AlwNI	CAGNNNCTG	1 cut(s)	316
Ama87I	CYCGRG	1 cut(s)	214
Aor51HI	AGCGCT	1 cut(s)	286
ArsI	GACNNNNNNTTYG	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	287
AspS9I	GGNCC	1 cut(s)	491
AsuHPI	GGTGA	1 cut(s)	139
AvaI	CYCGRG	1 cut(s)	214
AvaII	GGWCC	1 cut(s)	491
BanII	GRGCYC	2 cut(s)	66, 237
BbrPI	CACGTG	1 cut(s)	52
BbsI	GAAGAC	1 cut(s)	557
Bbv12I	GWGCWC	1 cut(s)	66
BceAI	ACGGC	1 cut(s)	690
BciT130I	CCWGG	1 cut(s)	471
BfmI	CTRYAG	1 cut(s)	498
BfoI	RGCGCY	1 cut(s)	288
BisI	GCNGC	2 cut(s)	228, 252
BlsI	GCNGC	2 cut(s)	229, 253
Bme1390I	CCNGG	1 cut(s)	471
Bme18I	GGWCC	1 cut(s)	491
BmeT110I	CYCGRG	1 cut(s)	214
BmgBI	CACGTC	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	491
BmiI	GGNNCC	1 cut(s)	468
BmrFI	CCNGG	1 cut(s)	471
BmrI	ACTGGG	2 cut(s)	268, 348
BmsI	GCATC	1 cut(s)	600
BmuI	ACTGGG	2 cut(s)	268, 348
BpiI	GAAGAC	1 cut(s)	557
BsaAI	YACGTR	1 cut(s)	52
BsaXI	ACNNNNNCTCC	6 cut(s)	114, 144, 251, 281, 580, 610
Bsc4I	CCNNNNNNNGG	1 cut(s)	279
Bse118I	RCCGGY	1 cut(s)	493
Bse1I	ACTGG	2 cut(s)	274, 343
BseBI	CCWGG	1 cut(s)	471
BseGI	GGATG	2 cut(s)	176, 639
BseLI	CCNNNNNNNGG	1 cut(s)	279
BseNI	ACTGG	2 cut(s)	274, 343
BseRI	GAGGAG	3 cut(s)	134, 256, 259
Bsh1236I	CGCG	2 cut(s)	351, 489
BsiHKAI	GWGCWC	1 cut(s)	66
BsiHKCI	CYCGRG	1 cut(s)	214
BsiSI	CCGG	1 cut(s)	494
BslI	CCNNNNNNNGG	1 cut(s)	279
BsoBI	CYCGRG	1 cut(s)	214
Bsp1286I	GDGCHC	2 cut(s)	66, 237
Bsp143I	GATC	3 cut(s)	108, 155, 243
BspACI	CCGC	5 cut(s)	57, 185, 228, 252, 489
BspFNI	CGCG	2 cut(s)	351, 489
BspLI	GGNNCC	1 cut(s)	468
BspPI	GGATC	2 cut(s)	103, 150
BsrFI	RCCGGY	1 cut(s)	493
BsrI	ACTGG	2 cut(s)	274, 343
BssAI	RCCGGY	1 cut(s)	493
BssMI	GATC	3 cut(s)	108, 155, 243
Bst2UI	CCWGG	1 cut(s)	471
Bst4CI	ACNGT	2 cut(s)	192, 356
BstBAI	YACGTR	1 cut(s)	52
BstC8I	GCNNGC	2 cut(s)	83, 487
BstF5I	GGATG	2 cut(s)	176, 639
BstFNI	CGCG	2 cut(s)	351, 489
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	287
BstKTI	GATC	3 cut(s)	111, 158, 246
BstMBI	GATC	3 cut(s)	108, 155, 243
BstMWI	GCNNNNNNNGC	1 cut(s)	46
BstNI	CCWGG	1 cut(s)	471
BstSCI	CCNGG	1 cut(s)	469
BstSFI	CTRYAG	1 cut(s)	498
BstUI	CGCG	2 cut(s)	351, 489
BstV2I	GAAGAC	1 cut(s)	557
BtrI	CACGTC	1 cut(s)	10
BtsCI	GGATG	2 cut(s)	176, 639
BtsI	GCAGTG	1 cut(s)	317
BtsIMutI	CAGTG	1 cut(s)	317
Cac8I	GCNNGC	2 cut(s)	83, 487
CaiI	CAGNNNCTG	1 cut(s)	316
CfoI	GCGC	1 cut(s)	287
Cfr10I	RCCGGY	1 cut(s)	493
Cfr13I	GGNCC	1 cut(s)	491
CpoI	CGGWCCG	1 cut(s)	491
Csp6I	GTAC	1 cut(s)	682
CspI	CGGWCCG	1 cut(s)	491
CviAII	CATG	2 cut(s)	100, 325
CviJI	RGCY	8 cut(s)	64, 85, 95, 235, 316, 365, 497, 503
CviKI_1	RGCY	8 cut(s)	64, 85, 95, 235, 316, 365, 497, 503
CviQI	GTAC	1 cut(s)	682
DpnI	GATC	3 cut(s)	110, 157, 245
DpnII	GATC	3 cut(s)	108, 155, 243
DraIII	CACNNNGTG	1 cut(s)	10
Ecl136II	GAGCTC	1 cut(s)	64
Eco24I	GRGCYC	2 cut(s)	66, 237
Eco47I	GGWCC	1 cut(s)	491
Eco47III	AGCGCT	1 cut(s)	286
Eco53kI	GAGCTC	1 cut(s)	64
Eco57I	CTGAAG	2 cut(s)	338, 443
Eco72I	CACGTG	1 cut(s)	52
Eco88I	CYCGRG	1 cut(s)	214
EcoICRI	GAGCTC	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	469
EcoT38I	GRGCYC	2 cut(s)	66, 237
FaeI	CATG	2 cut(s)	103, 328
FatI	CATG	2 cut(s)	99, 324
FauI	CCCGC	1 cut(s)	192
Fnu4HI	GCNGC	2 cut(s)	228, 252
FokI	GGATG	2 cut(s)	163, 626
FriOI	GRGCYC	2 cut(s)	66, 237
Fsp4HI	GCNGC	2 cut(s)	228, 252
GlaI	GCGC	1 cut(s)	286
GluI	GCNGC	2 cut(s)	228, 252
HaeII	RGCGCY	1 cut(s)	288
HapII	CCGG	1 cut(s)	494
HhaI	GCGC	1 cut(s)	287
Hin1II	CATG	2 cut(s)	103, 328
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HincII	GTYRAC	2 cut(s)	195, 221
HindII	GTYRAC	2 cut(s)	195, 221
HindIII	AAGCTT	2 cut(s)	83, 93
HinfI	GANTC	6 cut(s)	196, 217, 293, 343, 521, 693
HpaII	CCGG	1 cut(s)	494
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	2 cut(s)	195, 221
Hpy188I	TCNGA	5 cut(s)	181, 369, 423, 526, 627
Hpy188III	TCNNGA	3 cut(s)	214, 241, 280
Hpy8I	GTNNAC	2 cut(s)	195, 221
Hpy99I	CGWCG	3 cut(s)	11, 251, 356
HpyAV	CCTTC	2 cut(s)	161, 169
HpyCH4III	ACNGT	2 cut(s)	192, 356
HpyCH4IV	ACGT	3 cut(s)	9, 51, 635
HpyCH4V	TGCA	4 cut(s)	4, 20, 168, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	46
HpySE526I	ACGT	3 cut(s)	9, 51, 635
Hsp92II	CATG	2 cut(s)	103, 328
HspAI	GCGC	1 cut(s)	285
Kzo9I	GATC	3 cut(s)	108, 155, 243
LmnI	GCTCC	2 cut(s)	69, 282
LweI	GCATC	1 cut(s)	600
MaeII	ACGT	3 cut(s)	9, 51, 635
MalI	GATC	3 cut(s)	110, 157, 245
MboI	GATC	3 cut(s)	108, 155, 243
MboII	GAAGA	2 cut(s)	331, 557
MhlI	GDGCHC	2 cut(s)	66, 237
MluCI	AATT	3 cut(s)	381, 645, 668
MlyI	GAGTC	2 cut(s)	190, 226
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	6 cut(s)	155, 215, 277, 280, 402, 520
MseI	TTAA	3 cut(s)	306, 620, 706
MslI	CAYNNNNRTG	2 cut(s)	578, 608
MspI	CCGG	1 cut(s)	494
MspR9I	CCNGG	1 cut(s)	471
MvaI	CCWGG	1 cut(s)	471
MvnI	CGCG	2 cut(s)	351, 489
MwoI	GCNNNNNNNGC	1 cut(s)	46
NdeII	GATC	3 cut(s)	108, 155, 243
NlaIII	CATG	2 cut(s)	103, 328
NlaIV	GGNNCC	1 cut(s)	468
NmeAIII	GCCGAG	1 cut(s)	256
PfeI	GAWTC	4 cut(s)	293, 343, 521, 693
PkrI	GCNGC	2 cut(s)	229, 253
PleI	GAGTC	2 cut(s)	190, 225
PmaCI	CACGTG	1 cut(s)	52
PmlI	CACGTG	1 cut(s)	52
PpsI	GAGTC	2 cut(s)	190, 225
Ppu21I	YACGTR	1 cut(s)	52
Psp124BI	GAGCTC	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	469
PspCI	CACGTG	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	469
PspN4I	GGNNCC	1 cut(s)	468
PspPI	GGNCC	1 cut(s)	491
PstNI	CAGNNNCTG	1 cut(s)	316
RsaI	GTAC	1 cut(s)	683
RsaNI	GTAC	1 cut(s)	682
RseI	CAYNNNNRTG	2 cut(s)	578, 608
Rsr2I	CGGWCCG	1 cut(s)	491
RsrII	CGGWCCG	1 cut(s)	491
SacI	GAGCTC	1 cut(s)	66
SaqAI	TTAA	3 cut(s)	306, 620, 706
SatI	GCNGC	2 cut(s)	228, 252
Sau3AI	GATC	3 cut(s)	108, 155, 243
Sau96I	GGNCC	1 cut(s)	491
SchI	GAGTC	2 cut(s)	190, 226
ScrFI	CCNGG	1 cut(s)	471
SduI	GDGCHC	2 cut(s)	66, 237
SfaNI	GCATC	1 cut(s)	600
SfcI	CTRYAG	1 cut(s)	498
SinI	GGWCC	1 cut(s)	491
SmiMI	CAYNNNNRTG	2 cut(s)	578, 608
Sse9I	AATT	3 cut(s)	381, 645, 668
SsiI	CCGC	5 cut(s)	57, 185, 228, 252, 489
SstI	GAGCTC	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	469
TaaI	ACNGT	2 cut(s)	192, 356
TaiI	ACGT	3 cut(s)	12, 54, 638
TaqI	TCGA	1 cut(s)	154
TasI	AATT	3 cut(s)	381, 645, 668
TatI	WGTACW	1 cut(s)	681
TauI	GCSGC	2 cut(s)	230, 254
TfiI	GAWTC	4 cut(s)	293, 343, 521, 693
Tru1I	TTAA	3 cut(s)	306, 620, 706
Tru9I	TTAA	3 cut(s)	306, 620, 706
TscAI	CASTG	1 cut(s)	317
TspDTI	ATGAA	3 cut(s)	557, 562, 628
TspRI	CASTG	1 cut(s)	317
VpaK11BI	GGWCC	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.