Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Reverse (-)

21862336 .. 21863992

Gene Structure 1657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG196900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCTACTCCCAGGCTTCTCGGTCCTCCTAAGCTCCAAAAACCCTCACGCACCACCACCGCTCCGCCGCCACCCCAACCTGAATCCAAACCCGCCACCGGCAAACCCTTCGTGGACCTGATGGTGGTGATCTCTTGGAGTGCTATCGATTCTTCTTTGTTTAAGCAGTGGCTGAAGAACACCCAGAGTGAAAATGGGATTTTACACGGCGGTTCCATGTCTCTTACACGAGTTCTAATTCAGTTTCATTTAAGCTCTATGACTTGGATAACATGGGCTTTATTGAGCACCAAGAGGTATTTCGTGTTCAGAGGGATATTACCACCACATTTCCAAGTTTTGTATTTAATTCAGAGGTTGATGAATTCGGAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019144 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0080041 GO:0080042

KEGG Pathways

Metabolic & Signaling

ko00051 ko00230 ko00500 ko01100 ko01110 map00051 map00230 map00500 map01100 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

125

Amino Acids

14.19

Weight (kDa)

10.75

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	62
AciI	CCGC	5 cut(s)	60, 65, 68, 93, 210
AcsI	RAATTY	1 cut(s)	364
AcuI	CTGAAG	1 cut(s)	194
AfiI	CCNNNNNNNGG	2 cut(s)	98, 124
AjnI	CCWGG	1 cut(s)	11
AjuI	GAANNNNNNNTTGG	2 cut(s)	284, 316
AluBI	AGCT	2 cut(s)	34, 255
AluI	AGCT	2 cut(s)	34, 255
Alw21I	GWGCWC	1 cut(s)	290
Alw26I	GTCTC	1 cut(s)	225
AlwNI	CAGNNNCTG	1 cut(s)	172
ApoI	RAATTY	1 cut(s)	364
AspS9I	GGNCC	2 cut(s)	23, 115
AsuHPI	GGTGA	1 cut(s)	139
AvaII	GGWCC	2 cut(s)	23, 115
BauI	CACGAG	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	290
BccI	CCATC	1 cut(s)	115
BceAI	ACGGC	1 cut(s)	223
BcgI	CGANNNNNNTGC	2 cut(s)	91, 125
BciT130I	CCWGG	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	225
BisI	GCNGC	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	69
Bme1390I	CCNGG	1 cut(s)	13
Bme18I	GGWCC	2 cut(s)	23, 115
BmgT120I	GGNCC	2 cut(s)	23, 115
BmiI	GGNNCC	1 cut(s)	214
BmrFI	CCNGG	1 cut(s)	13
Bpu10I	CCTNAGC	1 cut(s)	30
Bsa29I	ATCGAT	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	11
BsaXI	ACNNNNNCTCC	2 cut(s)	46, 76
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 124
Bse118I	RCCGGY	1 cut(s)	98
BseBI	CCWGG	1 cut(s)	13
BseCI	ATCGAT	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	11
BseLI	CCNNNNNNNGG	2 cut(s)	98, 124
BshVI	ATCGAT	1 cut(s)	147
BsiHKAI	GWGCWC	1 cut(s)	290
BsiSI	CCGG	1 cut(s)	99
BslI	CCNNNNNNNGG	2 cut(s)	98, 124
BsmAI	GTCTC	1 cut(s)	225
Bsp1286I	GDGCHC	1 cut(s)	290
Bsp143I	GATC	1 cut(s)	129
BspACI	CCGC	5 cut(s)	60, 65, 68, 93, 210
BspDI	ATCGAT	1 cut(s)	147
BspLI	GGNNCC	1 cut(s)	214
BsrBI	CCGCTC	1 cut(s)	62
BsrFI	RCCGGY	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	11
BssMI	GATC	1 cut(s)	129
BssSI	CACGAG	1 cut(s)	228
Bst2BI	CACGAG	1 cut(s)	228
Bst2UI	CCWGG	1 cut(s)	13
BstDEI	CTNAG	1 cut(s)	30
BstKTI	GATC	1 cut(s)	132
BstMAI	GTCTC	1 cut(s)	225
BstMBI	GATC	1 cut(s)	129
BstNI	CCWGG	1 cut(s)	13
BstSCI	CCNGG	1 cut(s)	11
Bsu15I	ATCGAT	1 cut(s)	147
BsuTUI	ATCGAT	1 cut(s)	147
BtsI	GCAGTG	1 cut(s)	173
BtsIMutI	CAGTG	1 cut(s)	173
CaiI	CAGNNNCTG	1 cut(s)	172
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	2 cut(s)	23, 115
ClaI	ATCGAT	1 cut(s)	147
CviAII	CATG	2 cut(s)	217, 273
CviJI	RGCY	6 cut(s)	5, 16, 34, 172, 255, 278
CviKI_1	RGCY	6 cut(s)	5, 16, 34, 172, 255, 278
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
EciI	GGCGGA	1 cut(s)	54
Eco47I	GGWCC	2 cut(s)	23, 115
Eco57I	CTGAAG	1 cut(s)	194
EcoRI	GAATTC	1 cut(s)	364
EcoRII	CCWGG	1 cut(s)	11
FaeI	CATG	2 cut(s)	220, 276
FaiI	YATR	3 cut(s)	218, 260, 274
FatI	CATG	2 cut(s)	216, 272
FauI	CCCGC	1 cut(s)	100
Fnu4HI	GCNGC	1 cut(s)	68
Fsp4HI	GCNGC	1 cut(s)	68
GluI	GCNGC	1 cut(s)	68
HapII	CCGG	1 cut(s)	99
Hin1II	CATG	2 cut(s)	220, 276
HinfI	GANTC	2 cut(s)	83, 149
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	3 cut(s)	311, 354, 370
Hpy8I	GTNNAC	1 cut(s)	115
HpyAV	CCTTC	1 cut(s)	118
HpyF3I	CTNAG	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	220, 276
Kzo9I	GATC	1 cut(s)	129
LmnI	GCTCC	2 cut(s)	39, 67
LpnPI	CCDG	5 cut(s)	25, 93, 112, 131, 197
MalI	GATC	1 cut(s)	131
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	1 cut(s)	129
MboII	GAAGA	2 cut(s)	144, 187
MhlI	GDGCHC	1 cut(s)	290
MluCI	AATT	3 cut(s)	237, 348, 364
MnlI	CCTC	5 cut(s)	36, 55, 288, 305, 348
MseI	TTAA	3 cut(s)	162, 251, 347
MspI	CCGG	1 cut(s)	99
MspR9I	CCNGG	1 cut(s)	13
MvaI	CCWGG	1 cut(s)	13
NdeII	GATC	1 cut(s)	129
NlaIII	CATG	2 cut(s)	220, 276
NlaIV	GGNNCC	1 cut(s)	214
PfeI	GAWTC	2 cut(s)	83, 149
PkrI	GCNGC	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	11
PspGI	CCWGG	1 cut(s)	11
PspN4I	GGNNCC	1 cut(s)	214
PspPI	GGNCC	2 cut(s)	23, 115
PsrI	GAACNNNNNNTAC	2 cut(s)	290, 322
PstNI	CAGNNNCTG	1 cut(s)	172
SaqAI	TTAA	3 cut(s)	162, 251, 347
SatI	GCNGC	1 cut(s)	68
Sau3AI	GATC	1 cut(s)	129
Sau96I	GGNCC	2 cut(s)	23, 115
ScrFI	CCNGG	1 cut(s)	13
SduI	GDGCHC	1 cut(s)	290
SetI	ASST	6 cut(s)	36, 82, 120, 257, 299, 359
SinI	GGWCC	2 cut(s)	23, 115
Sse9I	AATT	3 cut(s)	237, 348, 364
SsiI	CCGC	5 cut(s)	60, 65, 68, 93, 210
StyD4I	CCNGG	1 cut(s)	11
TaqI	TCGA	1 cut(s)	147
TaqII	GACCGA	1 cut(s)	11
TasI	AATT	3 cut(s)	237, 348, 364
TauI	GCSGC	1 cut(s)	70
TfiI	GAWTC	2 cut(s)	83, 149
Tru1I	TTAA	3 cut(s)	162, 251, 347
Tru9I	TTAA	3 cut(s)	162, 251, 347
TscAI	CASTG	1 cut(s)	173
TspDTI	ATGAA	2 cut(s)	236, 377
TspRI	CASTG	1 cut(s)	173
VpaK11BI	GGWCC	2 cut(s)	23, 115
XapI	RAATTY	1 cut(s)	364
XcmI	CCANNNNNNNNNTGG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.