Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Reverse (-)

19479208 .. 19480320

Gene Structure 1113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00233480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGACTTCACCAAGCAGTTGAAGCAAAAGAAGTTCTGTCGATTCAAAACGAACTATAACTCTGGCATCTATCAGCTACCAAAACTTCTTTCTCCAGCAACTGAAAGCATATACAAGCCTAAAGTTACAATTGTCCCCACAAACAAGCCTATGATAAGAAAGGATGAATCTGATGTAGTTTTCAGGGCAACTAAAGGTAAATGGCGGGCAGTTGTAGTAGAGATTTCTAGAATACACAAAACAGGTCGCCCTGTACTTGTTGGCACAACTAGTGTTGAGCAGAGTGACTCATTGTCTGAGCAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005524 GO:0006810 GO:0008104 GO:0008144 GO:0008150 GO:0008320 GO:0008565 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022804 GO:0022857 GO:0022884 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033220 GO:0035639 GO:0036094 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043167 GO:0043168 GO:0043492 GO:0045184 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071806 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SecA_DEAD SecA_PP_bind SecA_SW

Protein Analysis

102

Amino Acids

11.66

Weight (kDa)

10.0

Isoelectric Point (pI)

38.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P-loop_SecA	PF21090	50 - 102	5.9e-16	SecA P-loop domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	205
AfaI	GTAC	1 cut(s)	255
AgsI	TTSAA	2 cut(s)	22, 46
AhdI	GACNNNNNGTC	1 cut(s)	292
AhlI	ACTAGT	1 cut(s)	269
AjuI	GAANNNNNNNTTGG	2 cut(s)	73, 105
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
AlwNI	CAGNNNCTG	1 cut(s)	101
BcuI	ACTAGT	1 cut(s)	269
BfaI	CTAG	2 cut(s)	228, 270
BmeRI	GACNNNNNGTC	1 cut(s)	292
BmsI	GCATC	1 cut(s)	75
BpmI	CTGGAG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	169
BseMII	CTCAG	1 cut(s)	288
BslFI	GGGAC	1 cut(s)	119
BsmFI	GGGAC	1 cut(s)	119
BspACI	CCGC	1 cut(s)	205
BspCNI	CTCAG	1 cut(s)	289
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	1 cut(s)	297
BstF5I	GGATG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	169
Cac8I	GCNNGC	1 cut(s)	207
CaiI	CAGNNNCTG	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	254
CviJI	RGCY	3 cut(s)	76, 118, 148
CviKI_1	RGCY	3 cut(s)	76, 118, 148
CviQI	GTAC	1 cut(s)	254
DdeI	CTNAG	1 cut(s)	297
DriI	GACNNNNNGTC	1 cut(s)	292
Eam1105I	GACNNNNNGTC	1 cut(s)	292
FaiI	YATR	4 cut(s)	57, 110, 112, 152
FaqI	GGGAC	1 cut(s)	119
FauI	CCCGC	1 cut(s)	198
FokI	GGATG	1 cut(s)	176
FspBI	CTAG	2 cut(s)	228, 270
GsuI	CTGGAG	1 cut(s)	78
HinfI	GANTC	3 cut(s)	42, 167, 287
Hpy188I	TCNGA	2 cut(s)	172, 298
Hpy188III	TCNNGA	1 cut(s)	228
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
HpyF3I	CTNAG	1 cut(s)	297
LpnPI	CCDG	5 cut(s)	48, 108, 169, 228, 264
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	2 cut(s)	228, 270
MaeIII	GTNAC	2 cut(s)	124, 284
MfeI	CAATTG	1 cut(s)	129
MluCI	AATT	1 cut(s)	129
MlyI	GAGTC	1 cut(s)	281
MunI	CAATTG	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	22
NmuCI	GTSAC	1 cut(s)	284
PfeI	GAWTC	2 cut(s)	42, 167
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
PstNI	CAGNNNCTG	1 cut(s)	101
RsaI	GTAC	1 cut(s)	255
RsaNI	GTAC	1 cut(s)	254
SchI	GAGTC	1 cut(s)	281
SetI	ASST	3 cut(s)	78, 199, 247
SfaNI	GCATC	1 cut(s)	75
SpeI	ACTAGT	1 cut(s)	269
Sse9I	AATT	1 cut(s)	129
SsiI	CCGC	1 cut(s)	205
SspMI	CTAG	2 cut(s)	228, 270
TaqI	TCGA	1 cut(s)	40
TasI	AATT	1 cut(s)	129
TatI	WGTACW	1 cut(s)	253
TfiI	GAWTC	2 cut(s)	42, 167
TseFI	GTSAC	1 cut(s)	284
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	1 cut(s)	180
XbaI	TCTAGA	1 cut(s)	227
XspI	CTAG	2 cut(s)	228, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.