Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Reverse (-)

57488849 .. 57489376

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG432900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGCCCTCAAAAGACAAAAGTCAGATTTTCTTTTCTTTTCTTTTTGGTTCTTTTCTTCTCTCTCTTCTCCCGACAACAATCTCCCTCTTATCTCTTTCTTCTCCAGACAACGACCTCTTCTCCATTGAAAATTGGTCATCTTCTCCATTAAAAATCAAGGTTCGCAATTTCGGGTTTGATATAGAAACGAAGGTTTATGCACGACGTGTCTTTTGCGAAACAAAAACATTTGGGCAACAAACATGTGTGTGCGTAGAGCTCCCCGCTGGTTGTAGCAAGACGACGGGCCTTGTTCAAGCTTCAATGTCGTTGATCCCCAGAACCACACTCACACTCCCTAGAACACTCCTCACCCTTCAATCCTTCTCCTGCAAAATGTCATCCGACTTGCCACCGTTGACTCACTCCCTCACTCTCCCGAGTCAACTCGCCGCCGAGCCCGTCCAGATCGTCGCCGCCCCCCACATCTCCTCCTCCCAGTTCAGGACAGGAGTGCGATTGATTCGTCTCTGTTTAAGCAGTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019144 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0080041 GO:0080042

KEGG Pathways

Metabolic & Signaling

ko00051 ko00230 ko00500 ko01100 ko01110 map00051 map00230 map00500 map01100 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

175

Amino Acids

19.17

Weight (kDa)

9.21

Isoelectric Point (pI)

62.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	264, 432, 456
AclWI	GGATC	1 cut(s)	307
AdeI	CACNNNGTG	1 cut(s)	206
AfiI	CCNNNNNNNGG	1 cut(s)	483
AflIII	ACRYGT	2 cut(s)	205, 242
AgsI	TTSAA	4 cut(s)	128, 296, 303, 359
AjiI	CACGTC	1 cut(s)	206
AluBI	AGCT	2 cut(s)	259, 299
AluI	AGCT	2 cut(s)	259, 299
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	1 cut(s)	512
AlwI	GGATC	1 cut(s)	307
AlwNI	CAGNNNCTG	1 cut(s)	525
Ama87I	CYCGRG	1 cut(s)	418
AoxI	GGCC	1 cut(s)	286
ArsI	GACNNNNNNTTYG	2 cut(s)	195, 227
AspS9I	GGNCC	1 cut(s)	286
AsuHPI	GGTGA	1 cut(s)	343
AvaI	CYCGRG	1 cut(s)	418
BanII	GRGCYC	2 cut(s)	261, 441
Bbv12I	GWGCWC	1 cut(s)	261
BcoDI	GTCTC	1 cut(s)	512
BfaI	CTAG	1 cut(s)	339
BisI	GCNGC	2 cut(s)	432, 456
BlsI	GCNGC	2 cut(s)	433, 457
BmeT110I	CYCGRG	1 cut(s)	418
BmgBI	CACGTC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	286
BmrI	ACTGGG	1 cut(s)	472
BmuI	ACTGGG	1 cut(s)	472
BoxI	GACNNNNGTC	1 cut(s)	18
BpmI	CTGGAG	1 cut(s)	87
BsaXI	ACNNNNNCTCC	6 cut(s)	104, 134, 318, 348, 455, 485
Bsc4I	CCNNNNNNNGG	1 cut(s)	483
Bse1I	ACTGG	1 cut(s)	478
BseGI	GGATG	1 cut(s)	380
BseLI	CCNNNNNNNGG	1 cut(s)	483
BseNI	ACTGG	1 cut(s)	478
BseRI	GAGGAG	3 cut(s)	338, 460, 463
BshFI	GGCC	1 cut(s)	288
BsiHKAI	GWGCWC	1 cut(s)	261
BsiHKCI	CYCGRG	1 cut(s)	418
BslI	CCNNNNNNNGG	1 cut(s)	483
BsmAI	GTCTC	1 cut(s)	512
BsmBI	CGTCTC	1 cut(s)	512
BsnI	GGCC	1 cut(s)	288
BsoBI	CYCGRG	1 cut(s)	418
Bsp1286I	GDGCHC	2 cut(s)	261, 441
Bsp143I	GATC	2 cut(s)	312, 447
BspACI	CCGC	3 cut(s)	264, 432, 456
BspANI	GGCC	1 cut(s)	288
BspPI	GGATC	1 cut(s)	307
BsrI	ACTGG	1 cut(s)	478
BssMI	GATC	2 cut(s)	312, 447
Bst4CI	ACNGT	1 cut(s)	396
Bst6I	CTCTTC	2 cut(s)	69, 122
BstF5I	GGATG	1 cut(s)	380
BstKTI	GATC	2 cut(s)	315, 450
BstMAI	GTCTC	1 cut(s)	512
BstMBI	GATC	2 cut(s)	312, 447
BstNSI	RCATGY	1 cut(s)	246
BstPAI	GACNNNNGTC	1 cut(s)	18
BsuRI	GGCC	1 cut(s)	288
BtrI	CACGTC	1 cut(s)	206
BtsCI	GGATG	1 cut(s)	380
BtsI	GCAGTG	1 cut(s)	526
BtsIMutI	CAGTG	1 cut(s)	526
CaiI	CAGNNNCTG	1 cut(s)	525
Cfr13I	GGNCC	1 cut(s)	286
CviAII	CATG	1 cut(s)	243
CviJI	RGCY	5 cut(s)	259, 288, 299, 439, 525
CviKI_1	RGCY	5 cut(s)	259, 288, 299, 439, 525
DpnI	GATC	2 cut(s)	314, 449
DpnII	GATC	2 cut(s)	312, 447
DraIII	CACNNNGTG	1 cut(s)	206
Eam1104I	CTCTTC	2 cut(s)	69, 122
EarI	CTCTTC	2 cut(s)	69, 122
Ecl136II	GAGCTC	1 cut(s)	259
Eco24I	GRGCYC	2 cut(s)	261, 441
Eco53kI	GAGCTC	1 cut(s)	259
Eco88I	CYCGRG	1 cut(s)	418
EcoICRI	GAGCTC	1 cut(s)	259
EcoT38I	GRGCYC	2 cut(s)	261, 441
Esp3I	CGTCTC	1 cut(s)	512
FaeI	CATG	1 cut(s)	246
FaiI	YATR	3 cut(s)	182, 198, 244
FatI	CATG	1 cut(s)	242
FauI	CCCGC	1 cut(s)	271
Fnu4HI	GCNGC	2 cut(s)	432, 456
FokI	GGATG	1 cut(s)	367
FriOI	GRGCYC	2 cut(s)	261, 441
Fsp4HI	GCNGC	2 cut(s)	432, 456
FspBI	CTAG	1 cut(s)	339
GluI	GCNGC	2 cut(s)	432, 456
GsuI	CTGGAG	1 cut(s)	87
HaeIII	GGCC	1 cut(s)	288
Hin1II	CATG	1 cut(s)	246
HincII	GTYRAC	2 cut(s)	399, 425
HindII	GTYRAC	2 cut(s)	399, 425
HindIII	AAGCTT	1 cut(s)	297
HinfI	GANTC	3 cut(s)	400, 421, 502
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	2 cut(s)	399, 425
Hpy188I	TCNGA	2 cut(s)	24, 385
Hpy188III	TCNNGA	5 cut(s)	70, 104, 418, 445, 484
Hpy8I	GTNNAC	2 cut(s)	399, 425
Hpy99I	CGWCG	3 cut(s)	207, 286, 455
HpyAV	CCTTC	3 cut(s)	184, 365, 373
HpyCH4III	ACNGT	1 cut(s)	396
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	2 cut(s)	200, 372
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	1 cut(s)	246
Kzo9I	GATC	2 cut(s)	312, 447
LmnI	GCTCC	1 cut(s)	264
LpnPI	CCDG	8 cut(s)	117, 252, 331, 382, 458, 469, 474, 491
MaeI	CTAG	1 cut(s)	339
MaeII	ACGT	1 cut(s)	205
MalI	GATC	2 cut(s)	314, 449
MboI	GATC	2 cut(s)	312, 447
MboII	GAAGA	5 cut(s)	47, 56, 90, 109, 132
MhlI	GDGCHC	2 cut(s)	261, 441
MluCI	AATT	2 cut(s)	130, 166
MlyI	GAGTC	2 cut(s)	394, 430
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	7 cut(s)	16, 95, 125, 359, 419, 481, 484
MseI	TTAA	2 cut(s)	149, 515
MslI	CAYNNNNRTG	1 cut(s)	247
MspA1I	CMGCKG	1 cut(s)	266
NdeII	GATC	2 cut(s)	312, 447
NlaIII	CATG	1 cut(s)	246
NmeAIII	GCCGAG	1 cut(s)	460
NspI	RCATGY	1 cut(s)	246
PciI	ACATGT	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	502
PkrI	GCNGC	2 cut(s)	433, 457
PleI	GAGTC	2 cut(s)	394, 429
PpsI	GAGTC	2 cut(s)	394, 429
PscI	ACATGT	1 cut(s)	242
PshAI	GACNNNNGTC	1 cut(s)	18
Psp124BI	GAGCTC	1 cut(s)	261
PspPI	GGNCC	1 cut(s)	286
PstNI	CAGNNNCTG	1 cut(s)	525
RseI	CAYNNNNRTG	1 cut(s)	247
SacI	GAGCTC	1 cut(s)	261
SaqAI	TTAA	2 cut(s)	149, 515
SatI	GCNGC	2 cut(s)	432, 456
Sau3AI	GATC	2 cut(s)	312, 447
Sau96I	GGNCC	1 cut(s)	286
SchI	GAGTC	2 cut(s)	394, 430
SduI	GDGCHC	2 cut(s)	261, 441
SetI	ASST	6 cut(s)	117, 162, 195, 208, 261, 301
SmiMI	CAYNNNNRTG	1 cut(s)	247
Sse9I	AATT	2 cut(s)	130, 166
SsiI	CCGC	3 cut(s)	264, 432, 456
SspMI	CTAG	1 cut(s)	339
SstI	GAGCTC	1 cut(s)	261
TaaI	ACNGT	1 cut(s)	396
TaiI	ACGT	1 cut(s)	208
TasI	AATT	2 cut(s)	130, 166
TauI	GCSGC	2 cut(s)	434, 458
TfiI	GAWTC	1 cut(s)	502
Tru1I	TTAA	2 cut(s)	149, 515
Tru9I	TTAA	2 cut(s)	149, 515
TscAI	CASTG	1 cut(s)	526
TspRI	CASTG	1 cut(s)	526
XceI	RCATGY	1 cut(s)	246
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.