Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Forward (+)

52220575 .. 52222779

Gene Structure 2205 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003741

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGACGCGCCTTGTTCAAGCTTCCATGTCGTTGATCCCCAGAACCACACTCTTACTCCCCAGAACACTCCTCACCCTTCGATCCTTCTCCTGCAAAATGTCATCCGACTCGCCACCGTTGACTCACTCCCTCACTCTCCCGAGTCAACTCTCCGCCGAGCCCGTCCAGATCGTCGCCGCCCCCCACATCTCCTCCTCCCAGTTCAGGAGCGCTATTGATTCGTCTTTGTTTAAGCAGTGGCTGAAGAACATGGAGAGTGAAACTGGGATTCTACGCGACGGTTCTTTGGCTCTGAAACGAGTTCTAATTCAGGGTGCGGATATGTTTGGAAAGAGGATTGGGTTTCTAAAGTTTGAAGCAGATGTGATTGATAAAGAAACAGGGAAAAAGGTTCCAGGTATTGTGTTTGCACGCGGACCGGCTGTAGCTGTGCTTATACTTTTGGAATCGGAGGGCAAGACTTATGCTGTTCTTACCGAACAGGTTAGAGTACCTGTTGGAAGGATCATACTGGAGTTGCCTGCTGGAATGTTGGATGATGACAAGGGTGATTTTCTCGGCACCGCAATCCGTGAGGTGGAAGAAGAGACTGGCATATGCCTAAAACAAGAAGACGTGGTGGACCTCACAGCCTTCCTCGACCAATCTACTGGATGCAGAATATTTCCTTCTCCTGGAGGGTGTGATGAAGAACTCAGCCTCTATCTGTACAGAGGGCAGGTGGATAAAGAGATTATTGATCAGCTGCAAGGTAAAGAAACAGGTCTTCGTGACCATGGAGAGCTGATTAAGGTTCGTGTGCTCCCTTATGAAAAGCTCTGGCGCATGACAGCCGATGCAAAGGTTTTAACAGCCGTTGCACTCTATGAAATGGCAAAAAGAGAAGGGCTGTTGCCTCCCCTGAAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019144 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0080041 GO:0080042

KEGG Pathways

Metabolic & Signaling

ko00051 ko00230 ko00500 ko01100 ko01110 map00051 map00230 map00500 map01100 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

304

Amino Acids

33.41

Weight (kDa)

5.8

Isoelectric Point (pI)

47.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	138 - 279	6.4e-14	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	709
Acc36I	ACCTGC	1 cut(s)	709
AccB1I	GGYRCC	1 cut(s)	560
AccII	CGCG	3 cut(s)	7, 276, 414
AciI	CCGC	5 cut(s)	153, 177, 317, 414, 564
AclWI	GGATC	3 cut(s)	28, 75, 512
AcuI	CTGAAG	1 cut(s)	263
AfaI	GTAC	2 cut(s)	492, 710
AfeI	AGCGCT	1 cut(s)	211
AfiI	CCNNNNNNNGG	3 cut(s)	204, 577, 674
AgsI	TTSAA	2 cut(s)	17, 356
AjiI	CACGTC	1 cut(s)	616
AjnI	CCWGG	2 cut(s)	394, 673
AluBI	AGCT	5 cut(s)	20, 428, 745, 784, 817
AluI	AGCT	5 cut(s)	20, 428, 745, 784, 817
Alw21I	GWGCWC	1 cut(s)	804
Alw26I	GTCTC	1 cut(s)	581
AlwI	GGATC	3 cut(s)	28, 75, 512
AlwNI	CAGNNNCTG	1 cut(s)	241
Ama87I	CYCGRG	1 cut(s)	139
Aor51HI	AGCGCT	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	745
AspLEI	GCGC	3 cut(s)	9, 212, 825
AspS9I	GGNCC	2 cut(s)	416, 622
AsuHPI	GGTGA	2 cut(s)	64, 560
AvaI	CYCGRG	1 cut(s)	139
AvaII	GGWCC	2 cut(s)	416, 622
BanI	GGYRCC	1 cut(s)	560
BanII	GRGCYC	1 cut(s)	162
BbsI	GAAGAC	2 cut(s)	618, 758
Bbv12I	GWGCWC	1 cut(s)	804
BbvI	GCAGC	1 cut(s)	732
BceAI	ACGGC	1 cut(s)	839
BciT130I	CCWGG	2 cut(s)	396, 675
BclI	TGATCA	1 cut(s)	739
BcoDI	GTCTC	1 cut(s)	581
BfmI	CTRYAG	1 cut(s)	423
BfoI	RGCGCY	1 cut(s)	213
BfuAI	ACCTGC	1 cut(s)	709
BisI	GCNGC	2 cut(s)	177, 746
BlsI	GCNGC	2 cut(s)	178, 747
Bme1390I	CCNGG	2 cut(s)	396, 675
Bme18I	GGWCC	2 cut(s)	416, 622
BmeT110I	CYCGRG	1 cut(s)	139
BmgBI	CACGTC	1 cut(s)	616
BmgT120I	GGNCC	2 cut(s)	416, 622
BmiI	GGNNCC	2 cut(s)	393, 562
BmrFI	CCNGG	2 cut(s)	396, 675
BmrI	ACTGGG	2 cut(s)	193, 273
BmsI	GCATC	2 cut(s)	644, 826
BmuI	ACTGGG	2 cut(s)	193, 273
BpiI	GAAGAC	2 cut(s)	618, 758
BpmI	CTGGAG	2 cut(s)	533, 696
BsaJI	CCNNGG	1 cut(s)	775
BsaXI	ACNNNNNCTCC	4 cut(s)	39, 69, 176, 206
Bsc4I	CCNNNNNNNGG	3 cut(s)	204, 577, 674
Bse118I	RCCGGY	1 cut(s)	418
Bse1I	ACTGG	5 cut(s)	199, 268, 516, 595, 655
BseBI	CCWGG	2 cut(s)	396, 675
BseDI	CCNNGG	1 cut(s)	775
BseGI	GGATG	3 cut(s)	101, 541, 659
BseLI	CCNNNNNNNGG	3 cut(s)	204, 577, 674
BseMII	CTCAG	1 cut(s)	709
BseNI	ACTGG	5 cut(s)	199, 268, 516, 595, 655
BseRI	GAGGAG	3 cut(s)	59, 181, 184
BseXI	GCAGC	1 cut(s)	732
Bsh1236I	CGCG	3 cut(s)	7, 276, 414
BshNI	GGYRCC	1 cut(s)	560
BsiHKAI	GWGCWC	1 cut(s)	804
BsiHKCI	CYCGRG	1 cut(s)	139
BsiSI	CCGG	1 cut(s)	419
BslI	CCNNNNNNNGG	3 cut(s)	204, 577, 674
BsmAI	GTCTC	1 cut(s)	581
BsoBI	CYCGRG	1 cut(s)	139
Bsp1286I	GDGCHC	2 cut(s)	162, 804
Bsp1407I	TGTACA	1 cut(s)	708
Bsp143I	GATC	5 cut(s)	33, 80, 168, 504, 739
Bsp19I	CCATGG	1 cut(s)	775
BspACI	CCGC	5 cut(s)	153, 177, 317, 414, 564
BspCNI	CTCAG	1 cut(s)	708
BspFNI	CGCG	3 cut(s)	7, 276, 414
BspLI	GGNNCC	2 cut(s)	393, 562
BspMI	ACCTGC	1 cut(s)	709
BspPI	GGATC	3 cut(s)	28, 75, 512
BspT107I	GGYRCC	1 cut(s)	560
BsrFI	RCCGGY	1 cut(s)	418
BsrGI	TGTACA	1 cut(s)	708
BsrI	ACTGG	5 cut(s)	199, 268, 516, 595, 655
BssAI	RCCGGY	1 cut(s)	418
BssECI	CCNNGG	1 cut(s)	775
BssMI	GATC	5 cut(s)	33, 80, 168, 504, 739
BssT1I	CCWWGG	1 cut(s)	775
Bst2UI	CCWGG	2 cut(s)	396, 675
Bst4CI	ACNGT	2 cut(s)	117, 281
Bst6I	CTCTTC	1 cut(s)	579
BstAUI	TGTACA	1 cut(s)	708
BstC8I	GCNNGC	2 cut(s)	412, 522
BstDEI	CTNAG	1 cut(s)	695
BstDSI	CCRYGG	1 cut(s)	775
BstF5I	GGATG	3 cut(s)	101, 541, 659
BstFNI	CGCG	3 cut(s)	7, 276, 414
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	3 cut(s)	9, 212, 825
BstKTI	GATC	5 cut(s)	36, 83, 171, 507, 742
BstMAI	GTCTC	1 cut(s)	581
BstMBI	GATC	5 cut(s)	33, 80, 168, 504, 739
BstNI	CCWGG	2 cut(s)	396, 675
BstSCI	CCNGG	2 cut(s)	394, 673
BstSFI	CTRYAG	1 cut(s)	423
BstUI	CGCG	3 cut(s)	7, 276, 414
BstV1I	GCAGC	1 cut(s)	732
BstV2I	GAAGAC	2 cut(s)	618, 758
BstXI	CCANNNNNNTGG	1 cut(s)	650
BtgI	CCRYGG	1 cut(s)	775
BtrI	CACGTC	1 cut(s)	616
BtsCI	GGATG	3 cut(s)	101, 541, 659
BtsI	GCAGTG	1 cut(s)	242
BtsIMutI	CAGTG	1 cut(s)	242
BveI	ACCTGC	1 cut(s)	709
Cac8I	GCNNGC	2 cut(s)	412, 522
CaiI	CAGNNNCTG	1 cut(s)	241
CfoI	GCGC	3 cut(s)	9, 212, 825
Cfr10I	RCCGGY	1 cut(s)	418
Cfr13I	GGNCC	2 cut(s)	416, 622
CpoI	CGGWCCG	1 cut(s)	416
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	2 cut(s)	491, 709
CspI	CGGWCCG	1 cut(s)	416
CviAII	CATG	5 cut(s)	25, 250, 776, 826, 909
CviQI	GTAC	2 cut(s)	491, 709
DdeI	CTNAG	1 cut(s)	695
DpnI	GATC	5 cut(s)	35, 82, 170, 506, 741
DpnII	GATC	5 cut(s)	33, 80, 168, 504, 739
Eam1104I	CTCTTC	1 cut(s)	579
EarI	CTCTTC	1 cut(s)	579
EciI	GGCGGA	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	775
Eco24I	GRGCYC	1 cut(s)	162
Eco47I	GGWCC	2 cut(s)	416, 622
Eco47III	AGCGCT	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	263
Eco88I	CYCGRG	1 cut(s)	139
EcoRII	CCWGG	2 cut(s)	394, 673
EcoT14I	CCWWGG	1 cut(s)	775
EcoT38I	GRGCYC	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	775
FaeI	CATG	5 cut(s)	28, 253, 779, 829, 912
FatI	CATG	5 cut(s)	24, 249, 775, 825, 908
FauNDI	CATATG	1 cut(s)	596
FbaI	TGATCA	1 cut(s)	739
Fnu4HI	GCNGC	2 cut(s)	177, 746
FokI	GGATG	3 cut(s)	88, 548, 666
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	2 cut(s)	177, 746
GlaI	GCGC	3 cut(s)	8, 211, 824
GluI	GCNGC	2 cut(s)	177, 746
GsuI	CTGGAG	2 cut(s)	533, 696
HaeII	RGCGCY	1 cut(s)	213
HapII	CCGG	1 cut(s)	419
HgaI	GACGC	1 cut(s)	13
HhaI	GCGC	3 cut(s)	9, 212, 825
Hin1II	CATG	5 cut(s)	28, 253, 779, 829, 912
Hin6I	GCGC	3 cut(s)	7, 210, 823
HinP1I	GCGC	3 cut(s)	7, 210, 823
HincII	GTYRAC	2 cut(s)	120, 146
HindII	GTYRAC	2 cut(s)	120, 146
HindIII	AAGCTT	1 cut(s)	18
HinfI	GANTC	6 cut(s)	107, 121, 142, 218, 268, 446
HpaII	CCGG	1 cut(s)	419
HphI	GGTGA	2 cut(s)	64, 560
Hpy166II	GTNNAC	3 cut(s)	120, 146, 622
Hpy188I	TCNGA	3 cut(s)	106, 294, 451
Hpy188III	TCNNGA	4 cut(s)	139, 166, 205, 770
Hpy8I	GTNNAC	3 cut(s)	120, 146, 622
Hpy99I	CGWCG	2 cut(s)	176, 281
HpyAV	CCTTC	6 cut(s)	86, 94, 495, 643, 678, 878
HpyCH4III	ACNGT	2 cut(s)	117, 281
HpyCH4IV	ACGT	1 cut(s)	615
HpyCH4V	TGCA	6 cut(s)	93, 410, 657, 748, 839, 860
HpyF3I	CTNAG	1 cut(s)	695
HpySE526I	ACGT	1 cut(s)	615
Hsp92II	CATG	5 cut(s)	28, 253, 779, 829, 912
HspAI	GCGC	3 cut(s)	7, 210, 823
Ksp22I	TGATCA	1 cut(s)	739
Kzo9I	GATC	5 cut(s)	33, 80, 168, 504, 739
LmnI	GCTCC	2 cut(s)	207, 807
Lsp1109I	GCAGC	1 cut(s)	732
LweI	GCATC	2 cut(s)	644, 826
MaeII	ACGT	1 cut(s)	615
MaeIII	GTNAC	1 cut(s)	770
MalI	GATC	5 cut(s)	35, 82, 170, 506, 741
MboI	GATC	5 cut(s)	33, 80, 168, 504, 739
MboII	GAAGA	6 cut(s)	256, 593, 596, 623, 701, 758
MhlI	GDGCHC	2 cut(s)	162, 804
MluCI	AATT	1 cut(s)	306
MlyI	GAGTC	3 cut(s)	101, 115, 151
MmeI	TCCRAC	3 cut(s)	129, 478, 513
MseI	TTAA	3 cut(s)	231, 789, 848
MspA1I	CMGCKG	1 cut(s)	745
MspI	CCGG	1 cut(s)	419
MspR9I	CCNGG	2 cut(s)	396, 675
MvaI	CCWGG	2 cut(s)	396, 675
MvnI	CGCG	3 cut(s)	7, 276, 414
NcoI	CCATGG	1 cut(s)	775
NdeI	CATATG	1 cut(s)	596
NdeII	GATC	5 cut(s)	33, 80, 168, 504, 739
NlaIII	CATG	5 cut(s)	28, 253, 779, 829, 912
NlaIV	GGNNCC	2 cut(s)	393, 562
NmeAIII	GCCGAG	2 cut(s)	181, 537
NmuCI	GTSAC	1 cut(s)	770
PaqCI	CACCTGC	1 cut(s)	709
PfeI	GAWTC	3 cut(s)	218, 268, 446
PfoI	TCCNGGA	1 cut(s)	673
PkrI	GCNGC	2 cut(s)	178, 747
PleI	GAGTC	3 cut(s)	101, 115, 150
PpsI	GAGTC	3 cut(s)	101, 115, 150
Psp6I	CCWGG	2 cut(s)	394, 673
PspGI	CCWGG	2 cut(s)	394, 673
PspN4I	GGNNCC	2 cut(s)	393, 562
PspPI	GGNCC	2 cut(s)	416, 622
PstNI	CAGNNNCTG	1 cut(s)	241
PvuII	CAGCTG	1 cut(s)	745
RsaI	GTAC	2 cut(s)	492, 710
RsaNI	GTAC	2 cut(s)	491, 709
Rsr2I	CGGWCCG	1 cut(s)	416
RsrII	CGGWCCG	1 cut(s)	416
SaqAI	TTAA	3 cut(s)	231, 789, 848
SatI	GCNGC	2 cut(s)	177, 746
Sau3AI	GATC	5 cut(s)	33, 80, 168, 504, 739
Sau96I	GGNCC	2 cut(s)	416, 622
SchI	GAGTC	3 cut(s)	101, 115, 151
ScrFI	CCNGG	2 cut(s)	396, 675
SduI	GDGCHC	2 cut(s)	162, 804
SfaNI	GCATC	2 cut(s)	644, 826
SfcI	CTRYAG	1 cut(s)	423
SinI	GGWCC	2 cut(s)	416, 622
Sse9I	AATT	1 cut(s)	306
SsiI	CCGC	5 cut(s)	153, 177, 317, 414, 564
SspI	AATATT	1 cut(s)	663
StyD4I	CCNGG	2 cut(s)	394, 673
StyI	CCWWGG	1 cut(s)	775
TaaI	ACNGT	2 cut(s)	117, 281
TaiI	ACGT	1 cut(s)	618
TaqI	TCGA	2 cut(s)	79, 639
TasI	AATT	1 cut(s)	306
TatI	WGTACW	1 cut(s)	708
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	3 cut(s)	218, 268, 446
Tru1I	TTAA	3 cut(s)	231, 789, 848
Tru9I	TTAA	3 cut(s)	231, 789, 848
TscAI	CASTG	1 cut(s)	242
TseFI	GTSAC	1 cut(s)	770
TseI	GCWGC	1 cut(s)	745
Tsp45I	GTSAC	1 cut(s)	770
TspDTI	ATGAA	3 cut(s)	702, 825, 882
TspGWI	ACGGA	1 cut(s)	560
TspRI	CASTG	1 cut(s)	242
VpaK11BI	GGWCC	2 cut(s)	416, 622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.