Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Forward (+)

10198230 .. 10201701

Gene Structure 3472 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016807

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGCTACTCCCAGGCTTCTCGGCGCCACCCCAACCCGAATCGAAACCAGGCTCCAAACCCGCCACTGGCGAACACTTCGTGGACCTAATGGTGGTGATCTCTTGGTCAGATGTTTTTCTCTCCATCATCGTCCCCTTGGGGGTGGATCCGTGGGTTGGCTTCCCCTTTCATCTAGTCCCACTGAGGTTGGATCCTTCAGGTGCAAAATGTCGTCTGACTCGTCACCACCGTTAACTTACTCCATTACTCTATCCTATCAACCCGCCCAACCCGTCCAGATCGTCGCTGTCCCCCATATCTCTGATTCCGATTTCAGGAGTGCTATCGATACTTCCTTGTTTAAGCAGTGGTTGAAGAACACCCAGAGTGAAAATGGGATTTTACACGGCGGTTCCATGTCTCTTACACGAGTTCTAATTCAGGAAGTGGATATGTTCGGGAAGCACATCGGTTTTCTGAAATTCCAAGCAGATGTATTCGATAAACAAGCAGGGAAAAAGGAAAATCCATCAATGTCAATCAGCTGCGTGGCTTCAGCTGTAGCTGTGCTTATCCTTTTGAAGTCAGAGGAGATGACGTATGCTGTTCTTACTGAGCAGGATGAGTCTGATGTAGTTTTCAAGGCAACTAAAGGTAAATGGCGGGCAGTTGTAGTAGAGATTTCTAGAATGCACAAAACAGGCCGCCCTGTACTTGTTGGCACAACTAGTGTTGAGCAGAGTGACTCATTGTCTGAGCAGTTGCAAGAAGTTGGCATTCCCCATGAGGTTAATGAAAAGCTATTTCCATGCAAACTGTCCAATGAAAAGACCAAGTTTGCTGAGGAAGCTGTGAATTTAGCTGCTGAAACTTGGGGTCAGAGATCATTGACGGAGCTAGAAGCAGAGGAGCATCTTTCTTACTCTTGCGAAAAGGTGAAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019144 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0080041 GO:0080042

KEGG Pathways

Metabolic & Signaling

ko00051 ko00230 ko00500 ko01100 ko01110 map00051 map00230 map00500 map01100 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

309

Amino Acids

34.04

Weight (kDa)

6.76

Isoelectric Point (pI)

54.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P-loop_SecA	PF21090	199 - 257	5.4e-17	SecA P-loop domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	23
AciI	CCGC	5 cut(s)	61, 264, 390, 643, 685
AclWI	GGATC	4 cut(s)	141, 154, 186, 199
AcsI	RAATTY	2 cut(s)	461, 835
AcuI	CTGAAG	2 cut(s)	181, 519
AcyI	GRCGYC	1 cut(s)	24
AdeI	CACNNNGTG	1 cut(s)	80
AfaI	GTAC	1 cut(s)	693
AfiI	CCNNNNNNNGG	5 cut(s)	66, 92, 140, 156, 315
AgsI	TTSAA	3 cut(s)	355, 562, 622
AhdI	GACNNNNNGTC	1 cut(s)	730
AhlI	ACTAGT	1 cut(s)	707
AjnI	CCWGG	2 cut(s)	11, 47
AluBI	AGCT	7 cut(s)	525, 539, 545, 781, 830, 842, 877
AluI	AGCT	7 cut(s)	525, 539, 545, 781, 830, 842, 877
Alw26I	GTCTC	1 cut(s)	405
AlwI	GGATC	4 cut(s)	141, 154, 186, 199
AoxI	GGCC	1 cut(s)	682
ApeKI	GCWGC	2 cut(s)	525, 842
ApoI	RAATTY	2 cut(s)	461, 835
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	83
AsuHPI	GGTGA	2 cut(s)	107, 216
AvaII	GGWCC	1 cut(s)	83
BamHI	GGATCC	2 cut(s)	146, 191
BanI	GGYRCC	1 cut(s)	23
BauI	CACGAG	1 cut(s)	408
BbvCI	CCTCAGC	1 cut(s)	822
BbvI	GCAGC	2 cut(s)	512, 829
BccI	CCATC	2 cut(s)	132, 517
BceAI	ACGGC	1 cut(s)	403
BciT130I	CCWGG	2 cut(s)	13, 49
BcoDI	GTCTC	1 cut(s)	405
BcuI	ACTAGT	1 cut(s)	707
BfaI	CTAG	4 cut(s)	174, 666, 708, 878
BfmI	CTRYAG	1 cut(s)	540
BfoI	RGCGCY	1 cut(s)	27
BisI	GCNGC	3 cut(s)	526, 685, 843
BlsI	GCNGC	3 cut(s)	527, 686, 844
Bme1390I	CCNGG	2 cut(s)	13, 49
Bme18I	GGWCC	1 cut(s)	83
BmeRI	GACNNNNNGTC	1 cut(s)	730
BmgT120I	GGNCC	1 cut(s)	83
BmiI	GGNNCC	5 cut(s)	25, 53, 148, 193, 394
BmrFI	CCNGG	2 cut(s)	13, 49
BmsI	GCATC	1 cut(s)	901
Bpu10I	CCTNAGC	1 cut(s)	822
Bsa29I	ATCGAT	1 cut(s)	327
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	3 cut(s)	11, 136, 150
BsaXI	ACNNNNNCTCC	2 cut(s)	563, 593
Bsc4I	CCNNNNNNNGG	5 cut(s)	66, 92, 140, 156, 315
Bse1I	ACTGG	1 cut(s)	71
BseBI	CCWGG	2 cut(s)	13, 49
BseCI	ATCGAT	1 cut(s)	327
BseDI	CCNNGG	3 cut(s)	11, 136, 150
BseGI	GGATG	1 cut(s)	607
BseLI	CCNNNNNNNGG	5 cut(s)	66, 92, 140, 156, 315
BseMII	CTCAG	4 cut(s)	174, 585, 726, 813
BseNI	ACTGG	1 cut(s)	71
BseRI	GAGGAG	2 cut(s)	584, 902
BseXI	GCAGC	2 cut(s)	512, 829
BshFI	GGCC	1 cut(s)	684
BshNI	GGYRCC	1 cut(s)	23
BshVI	ATCGAT	1 cut(s)	327
BslFI	GGGAC	3 cut(s)	117, 162, 275
BslI	CCNNNNNNNGG	5 cut(s)	66, 92, 140, 156, 315
BsmAI	GTCTC	1 cut(s)	405
BsmFI	GGGAC	3 cut(s)	117, 162, 275
BsmI	GAATGC	2 cut(s)	675, 756
BsnI	GGCC	1 cut(s)	684
Bsp143I	GATC	5 cut(s)	97, 146, 191, 279, 863
BspACI	CCGC	5 cut(s)	61, 264, 390, 643, 685
BspANI	GGCC	1 cut(s)	684
BspCNI	CTCAG	4 cut(s)	175, 586, 727, 814
BspDI	ATCGAT	1 cut(s)	327
BspLI	GGNNCC	5 cut(s)	25, 53, 148, 193, 394
BspPI	GGATC	4 cut(s)	141, 154, 186, 199
BspT107I	GGYRCC	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	71
BssECI	CCNNGG	3 cut(s)	11, 136, 150
BssMI	GATC	5 cut(s)	97, 146, 191, 279, 863
BssNI	GRCGYC	1 cut(s)	24
BssSI	CACGAG	1 cut(s)	408
BssT1I	CCWWGG	1 cut(s)	136
Bst2BI	CACGAG	1 cut(s)	408
Bst2UI	CCWGG	2 cut(s)	13, 49
Bst4CI	ACNGT	2 cut(s)	231, 798
BstACI	GRCGYC	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	645
BstDEI	CTNAG	4 cut(s)	183, 594, 735, 822
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	607
BstH2I	RGCGCY	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	5 cut(s)	100, 149, 194, 282, 866
BstMAI	GTCTC	1 cut(s)	405
BstMBI	GATC	5 cut(s)	97, 146, 191, 279, 863
BstMWI	GCNNNNNNNGC	1 cut(s)	827
BstNI	CCWGG	2 cut(s)	13, 49
BstSCI	CCNGG	2 cut(s)	11, 47
BstSFI	CTRYAG	1 cut(s)	540
BstV1I	GCAGC	2 cut(s)	512, 829
BstX2I	RGATCY	2 cut(s)	146, 191
BstYI	RGATCY	2 cut(s)	146, 191
Bsu15I	ATCGAT	1 cut(s)	327
BsuRI	GGCC	1 cut(s)	684
BsuTUI	ATCGAT	1 cut(s)	327
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	607
BtsI	GCAGTG	1 cut(s)	353
BtsIMutI	CAGTG	3 cut(s)	64, 180, 353
Cac8I	GCNNGC	1 cut(s)	645
CfoI	GCGC	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	83
ClaI	ATCGAT	1 cut(s)	327
Csp6I	GTAC	1 cut(s)	692
CspCI	CAANNNNNGTGG	2 cut(s)	169, 204
CviAII	CATG	3 cut(s)	397, 764, 789
CviQI	GTAC	1 cut(s)	692
DdeI	CTNAG	4 cut(s)	183, 594, 735, 822
DinI	GGCGCC	1 cut(s)	25
DpnI	GATC	5 cut(s)	99, 148, 193, 281, 865
DpnII	GATC	5 cut(s)	97, 146, 191, 279, 863
DraIII	CACNNNGTG	1 cut(s)	80
DriI	GACNNNNNGTC	1 cut(s)	730
Eam1105I	GACNNNNNGTC	1 cut(s)	730
Eco130I	CCWWGG	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	83
Eco57I	CTGAAG	2 cut(s)	181, 519
EcoRII	CCWGG	2 cut(s)	11, 47
EcoT14I	CCWWGG	1 cut(s)	136
EgeI	GGCGCC	1 cut(s)	25
EheI	GGCGCC	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	136
FaeI	CATG	3 cut(s)	400, 767, 792
FaiI	YATR	6 cut(s)	297, 398, 434, 582, 765, 790
FaqI	GGGAC	3 cut(s)	117, 162, 275
FatI	CATG	3 cut(s)	396, 763, 788
FauI	CCCGC	3 cut(s)	68, 271, 636
Fnu4HI	GCNGC	3 cut(s)	526, 685, 843
FokI	GGATG	1 cut(s)	614
Fsp4HI	GCNGC	3 cut(s)	526, 685, 843
FspBI	CTAG	4 cut(s)	174, 666, 708, 878
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	3 cut(s)	526, 685, 843
HaeII	RGCGCY	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	684
HhaI	GCGC	1 cut(s)	26
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	3 cut(s)	400, 767, 792
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HincII	GTYRAC	1 cut(s)	234
HindII	GTYRAC	1 cut(s)	234
HinfI	GANTC	5 cut(s)	39, 218, 305, 605, 725
HpaI	GTTAAC	1 cut(s)	234
HphI	GGTGA	2 cut(s)	107, 216
Hpy166II	GTNNAC	2 cut(s)	83, 234
Hpy188I	TCNGA	9 cut(s)	110, 217, 304, 310, 459, 568, 610, 736, 861
Hpy188III	TCNNGA	5 cut(s)	277, 316, 422, 439, 666
Hpy8I	GTNNAC	2 cut(s)	83, 234
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	2 cut(s)	231, 798
HpyCH4IV	ACGT	1 cut(s)	578
HpyCH4V	TGCA	4 cut(s)	204, 673, 745, 792
HpyF10VI	GCNNNNNNNGC	1 cut(s)	827
HpyF3I	CTNAG	4 cut(s)	183, 594, 735, 822
HpySE526I	ACGT	1 cut(s)	578
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	3 cut(s)	400, 767, 792
HspAI	GCGC	1 cut(s)	24
KasI	GGCGCC	1 cut(s)	23
KspAI	GTTAAC	1 cut(s)	234
Kzo9I	GATC	5 cut(s)	97, 146, 191, 279, 863
LmnI	GCTCC	3 cut(s)	57, 874, 889
Lsp1109I	GCAGC	2 cut(s)	512, 829
LweI	GCATC	1 cut(s)	901
MaeI	CTAG	4 cut(s)	174, 666, 708, 878
MaeII	ACGT	1 cut(s)	578
MaeIII	GTNAC	2 cut(s)	222, 722
MalI	GATC	5 cut(s)	99, 148, 193, 281, 865
MboI	GATC	5 cut(s)	97, 146, 191, 279, 863
MboII	GAAGA	1 cut(s)	367
MflI	RGATCY	2 cut(s)	146, 191
MluCI	AATT	3 cut(s)	417, 461, 835
Mly113I	GGCGCC	1 cut(s)	24
MlyI	GAGTC	3 cut(s)	212, 614, 719
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	5 cut(s)	178, 562, 760, 817, 880
MseI	TTAA	3 cut(s)	233, 342, 771
MspA1I	CMGCKG	2 cut(s)	525, 539
MspR9I	CCNGG	2 cut(s)	13, 49
Mva1269I	GAATGC	2 cut(s)	675, 756
MvaI	CCWGG	2 cut(s)	13, 49
MwoI	GCNNNNNNNGC	1 cut(s)	827
NarI	GGCGCC	1 cut(s)	24
NdeII	GATC	5 cut(s)	97, 146, 191, 279, 863
NlaIII	CATG	3 cut(s)	400, 767, 792
NlaIV	GGNNCC	5 cut(s)	25, 53, 148, 193, 394
NmuCI	GTSAC	2 cut(s)	222, 722
PcsI	WCGNNNNNNNCGW	2 cut(s)	218, 227
PctI	GAATGC	2 cut(s)	675, 756
PfeI	GAWTC	2 cut(s)	39, 305
PkrI	GCNGC	3 cut(s)	527, 686, 844
PleI	GAGTC	3 cut(s)	212, 613, 719
PluTI	GGCGCC	1 cut(s)	27
PpsI	GAGTC	3 cut(s)	212, 613, 719
Psp6I	CCWGG	2 cut(s)	11, 47
PspGI	CCWGG	2 cut(s)	11, 47
PspN4I	GGNNCC	5 cut(s)	25, 53, 148, 193, 394
PspPI	GGNCC	1 cut(s)	83
PsuI	RGATCY	2 cut(s)	146, 191
PvuII	CAGCTG	2 cut(s)	525, 539
RsaI	GTAC	1 cut(s)	693
RsaNI	GTAC	1 cut(s)	692
SaqAI	TTAA	3 cut(s)	233, 342, 771
SatI	GCNGC	3 cut(s)	526, 685, 843
Sau3AI	GATC	5 cut(s)	97, 146, 191, 279, 863
Sau96I	GGNCC	1 cut(s)	83
SchI	GAGTC	3 cut(s)	212, 614, 719
ScrFI	CCNGG	2 cut(s)	13, 49
SfaNI	GCATC	1 cut(s)	901
SfcI	CTRYAG	1 cut(s)	540
SfoI	GGCGCC	1 cut(s)	25
SinI	GGWCC	1 cut(s)	83
SpeI	ACTAGT	1 cut(s)	707
Sse9I	AATT	3 cut(s)	417, 461, 835
SsiI	CCGC	5 cut(s)	61, 264, 390, 643, 685
SspDI	GGCGCC	1 cut(s)	23
SspMI	CTAG	4 cut(s)	174, 666, 708, 878
StyD4I	CCNGG	2 cut(s)	11, 47
StyI	CCWWGG	1 cut(s)	136
TaaI	ACNGT	2 cut(s)	231, 798
TaiI	ACGT	1 cut(s)	581
TaqI	TCGA	3 cut(s)	42, 327, 480
TasI	AATT	3 cut(s)	417, 461, 835
TatI	WGTACW	1 cut(s)	691
TauI	GCSGC	1 cut(s)	687
TfiI	GAWTC	2 cut(s)	39, 305
Tru1I	TTAA	3 cut(s)	233, 342, 771
Tru9I	TTAA	3 cut(s)	233, 342, 771
TscAI	CASTG	3 cut(s)	71, 187, 353
TseFI	GTSAC	2 cut(s)	222, 722
TseI	GCWGC	2 cut(s)	525, 842
Tsp45I	GTSAC	2 cut(s)	222, 722
TspDTI	ATGAA	3 cut(s)	159, 789, 819
TspGWI	ACGGA	2 cut(s)	139, 887
TspRI	CASTG	3 cut(s)	71, 187, 353
VpaK11BI	GGWCC	1 cut(s)	83
XapI	RAATTY	2 cut(s)	461, 835
XbaI	TCTAGA	1 cut(s)	665
XcmI	CCANNNNNNNNNTGG	1 cut(s)	371
XspI	CTAG	4 cut(s)	174, 666, 708, 878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.