FvH4_3g33680

Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
29193372 .. 29200374
7003 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g33680.t3

Sequence Viewer

Length: 1170 bp
ATGGCGGCGACTACCATTGCACGATCCGCCGCTACTCATCTCTCACTACCTTTCCCGACCAAGTCCTCGCCGTCCGACCCCTCACCCAAAGCCACACTCAAGCTCTTCCCCAAACGGCGTCGTTGCGCCTCCGTCGTCCTCGCCTCTCTTCACGGCGACGCAAACGGCAAAATCCTCGGCGGCGCTCTGGAATTGGAACACTCGCCGTTTGACGACGACGCATCGAAAGACCTGCACACTCTTCCAAGACCTTTGTCTTCGACTTTCGTCTCGAATTCGGTTTCGGAGGGCTCTCGGCTTCGTGTTGCTTATCAGGGTGTTCGTGGAGCATACAGTGAGTCAGCTGCTCAGAAGGCATACCCAAATTGCGAAGCGGTGCCTTGCGAACAATTTGATACTGCATTCGAAGCTGTCGAACGGTGGCTTGTGGACAGAGCAGTTTTACCAATTGAGAATTCACTAGGTGGTAGCATCCACAGAAATTATGACCTTTTACTCCGGCATAGATTACATATAGTAGGGGAAGTGAAACTTGCAGTTCGGCATTGCTTACTAGCTAACCCTGGTCTGGAAATTCAAGACCTAAAAAGGGTTCTTAGCCATCCACAGGCTCTTGCTCAGTGTGAGCACACATTAACCAGGTTTGGATTAGTCAGAGAAGCAGTGGATGATACTGCTGGTGCAGCGAAGCATGTTGCTTTCCACAAGCTGAAAGATGCAGGAGCAGTGGCCAGCTCTACCGCTGCAGAAATATACGGTCTGAATATACTTGCAGAGGATATTCAGGATGATTCTGATAATGTCACTCGATTTTTAATCCTTGCAAGAGAACCTATCATTCCCGGGACAGATAGGCCATTCAAGACGAGTATAGTTTTCTCACTAGAGGAAGGCCCTGGAGTCCTTTTCAAGGCACTCGCTGTGTTCGCATTGCGTCAAATCAATCTTACAAAGATTGAGAGCCGTCCTTTGCGGAAGCAACCCCTGCGAGCATCAGATGATAGTAATGGCGGATGTCCAAAACCAAAATACTTTGACTATCTTTTCTATGTGGATTTTGAAACATCGATGGCTGATCAGAATGCACAGAATGCCCTCAGACATCTCAGGGAGTTCGCTACATTCTTGCGGGTACTAGGGAGTTACCCAATGGATGCAAGCATGCCATGA

Protein Analysis

390

Amino Acids

42.64

Weight (kDa)

7.22

Isoelectric Point (pI)

48.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDT PF00800 5 - 178 8.5e-61 Prephenate dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 240
AccB1I GGYRCC 1 cut(s) 376
AciI CCGC 9 cut(s) 5, 27, 30, 180, 374, 741, 973, 1011, 1129
AclWI GGATC 1 cut(s) 18
AcoI YGGCCR 1 cut(s) 729
AcsI RAATTY 3 cut(s) 274, 454, 573
AcyI GRCGYC 1 cut(s) 118
AdeI CACNNNGTG 1 cut(s) 464
AfaI GTAC 1 cut(s) 1134
AfiI CCNNNNNNNGG 4 cut(s) 568, 589, 607, 910
AgsI TTSAA 4 cut(s) 578, 862, 910, 1061
AjnI CCWGG 3 cut(s) 562, 638, 895
AjuI GAANNNNNNNTTGG 2 cut(s) 439, 471
AluBI AGCT 6 cut(s) 103, 344, 410, 557, 709, 735
AluI AGCT 6 cut(s) 103, 344, 410, 557, 709, 735
Alw21I GWGCWC 1 cut(s) 630
Alw26I GTCTC 1 cut(s) 274
AlwI GGATC 1 cut(s) 18
Ama87I CYCGRG 1 cut(s) 842
AoxI GGCC 3 cut(s) 729, 854, 892
ApeKI GCWGC 3 cut(s) 344, 683, 743
ApoI RAATTY 3 cut(s) 274, 454, 573
AspLEI GCGC 2 cut(s) 128, 185
AspS9I GGNCC 1 cut(s) 893
AsuC2I CCSGG 2 cut(s) 843, 844
AsuHPI GGTGA 1 cut(s) 75
AsuII TTCGAA 1 cut(s) 405
AvaI CYCGRG 1 cut(s) 842
BalI TGGCCA 1 cut(s) 731
BanI GGYRCC 1 cut(s) 376
BanII GRGCYC 1 cut(s) 293
BbsI GAAGAC 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 630
BbvI GCAGC 3 cut(s) 331, 695, 730
BccI CCATC 2 cut(s) 609, 1063
BceAI ACGGC 6 cut(s) 55, 131, 169, 181, 190, 948
BcgI CGANNNNNNTGC 4 cut(s) 157, 191, 214, 248
BciT130I CCWGG 3 cut(s) 564, 640, 897
BclI TGATCA 1 cut(s) 1075
BcnI CCSGG 2 cut(s) 843, 844
BcoDI GTCTC 1 cut(s) 274
BfaI CTAG 4 cut(s) 461, 554, 884, 1136
BfmI CTRYAG 1 cut(s) 744
BfoI RGCGCY 1 cut(s) 186
BfuAI ACCTGC 1 cut(s) 240
BisI GCNGC 6 cut(s) 6, 30, 181, 345, 684, 744
BlsI GCNGC 6 cut(s) 7, 31, 182, 346, 685, 745
Bme1390I CCNGG 5 cut(s) 564, 640, 843, 844, 897
BmeT110I CYCGRG 1 cut(s) 842
BmgT120I GGNCC 1 cut(s) 893
BmiI GGNNCC 1 cut(s) 378
BmrFI CCNGG 5 cut(s) 564, 640, 843, 844, 897
BmsI GCATC 5 cut(s) 230, 480, 706, 1001, 1144
BoxI GACNNNNGTC 2 cut(s) 253, 266
BpiI GAAGAC 1 cut(s) 249
BpmI CTGGAG 1 cut(s) 918
Bpu14I TTCGAA 1 cut(s) 405
BpuEI CTTGAG 1 cut(s) 83
BpuMI CCSGG 2 cut(s) 843, 844
Bsa29I ATCGAT 1 cut(s) 1067
BsaHI GRCGYC 1 cut(s) 118
BsaJI CCNNGG 4 cut(s) 175, 562, 842, 895
Bsc4I CCNNNNNNNGG 4 cut(s) 568, 589, 607, 910
Bse3DI GCAATG 3 cut(s) 15, 544, 929
BseBI CCWGG 3 cut(s) 564, 640, 897
BseCI ATCGAT 1 cut(s) 1067
BseDI CCNNGG 4 cut(s) 175, 562, 842, 895
BseGI GGATG 6 cut(s) 471, 601, 673, 793, 1019, 1159
BseLI CCNNNNNNNGG 4 cut(s) 568, 589, 607, 910
BseMI GCAATG 3 cut(s) 15, 544, 929
BseMII CTCAG 4 cut(s) 362, 632, 1111, 1120
BseXI GCAGC 3 cut(s) 331, 695, 730
BsgI GTGCAG 2 cut(s) 218, 702
BshFI GGCC 3 cut(s) 731, 856, 894
BshNI GGYRCC 1 cut(s) 376
BshVI ATCGAT 1 cut(s) 1067
BsiHKAI GWGCWC 1 cut(s) 630
BsiHKCI CYCGRG 1 cut(s) 842
BsiSI CCGG 2 cut(s) 499, 843
BslFI GGGAC 1 cut(s) 859
BslI CCNNNNNNNGG 4 cut(s) 568, 589, 607, 910
BsmAI GTCTC 1 cut(s) 274
BsmBI CGTCTC 1 cut(s) 274
BsmFI GGGAC 1 cut(s) 859
BsmI GAATGC 3 cut(s) 401, 1087, 1096
BsnI GGCC 3 cut(s) 731, 856, 894
BsoBI CYCGRG 1 cut(s) 842
Bsp119I TTCGAA 1 cut(s) 405
Bsp1286I GDGCHC 2 cut(s) 293, 630
Bsp143I GATC 2 cut(s) 23, 1075
BspACI CCGC 9 cut(s) 5, 27, 30, 180, 374, 741, 973, 1011, 1129
BspANI GGCC 3 cut(s) 731, 856, 894
BspCNI CTCAG 4 cut(s) 361, 631, 1110, 1119
BspDI ATCGAT 1 cut(s) 1067
BspLI GGNNCC 1 cut(s) 378
BspMAI CTGCAG 1 cut(s) 748
BspMI ACCTGC 1 cut(s) 240
BspPI GGATC 1 cut(s) 18
BspQI GCTCTTC 1 cut(s) 110
BspT104I TTCGAA 1 cut(s) 405
BspT107I GGYRCC 1 cut(s) 376
BsrDI GCAATG 3 cut(s) 15, 544, 929
BssECI CCNNGG 4 cut(s) 175, 562, 842, 895
BssMI GATC 2 cut(s) 23, 1075
BssNI GRCGYC 1 cut(s) 118
Bst2UI CCWGG 3 cut(s) 564, 640, 897
Bst4CI ACNGT 3 cut(s) 335, 420, 758
Bst6I CTCTTC 3 cut(s) 110, 153, 246
BstACI GRCGYC 1 cut(s) 118
BstAPI GCANNNNNTGC 2 cut(s) 985, 1091
BstBI TTCGAA 1 cut(s) 405
BstC8I GCNNGC 4 cut(s) 733, 990, 1159, 1163
BstDEI CTNAG 5 cut(s) 348, 596, 618, 1097, 1106
BstENI CCTNNNNNAGG 1 cut(s) 908
BstF5I GGATG 6 cut(s) 471, 601, 673, 793, 1019, 1159
BstH2I RGCGCY 1 cut(s) 186
BstHHI GCGC 2 cut(s) 128, 185
BstKTI GATC 2 cut(s) 26, 1078
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 2 cut(s) 23, 1075
BstMWI GCNNNNNNNGC 7 cut(s) 26, 353, 407, 683, 926, 985, 1091
BstNI CCWGG 3 cut(s) 564, 640, 897
BstNSI RCATGY 2 cut(s) 695, 1165
BstPAI GACNNNNGTC 2 cut(s) 253, 266
BstSCI CCNGG 5 cut(s) 562, 638, 841, 842, 895
BstSFI CTRYAG 1 cut(s) 744
BstV1I GCAGC 3 cut(s) 331, 695, 730
BstV2I GAAGAC 1 cut(s) 249
Bsu15I ATCGAT 1 cut(s) 1067
BsuRI GGCC 3 cut(s) 731, 856, 894
BsuTUI ATCGAT 1 cut(s) 1067
BtsCI GGATG 6 cut(s) 471, 601, 673, 793, 1019, 1159
BtsI GCAGTG 2 cut(s) 669, 732
BtsIMutI CAGTG 4 cut(s) 340, 626, 669, 732
BveI ACCTGC 1 cut(s) 240
Cac8I GCNNGC 4 cut(s) 733, 990, 1159, 1163
CfoI GCGC 2 cut(s) 128, 185
Cfr13I GGNCC 1 cut(s) 893
Cfr9I CCCGGG 1 cut(s) 842
ClaI ATCGAT 1 cut(s) 1067
CseI GACGC 4 cut(s) 107, 167, 227, 923
CsiI ACCWGGT 1 cut(s) 638
Csp6I GTAC 1 cut(s) 1133
CviAII CATG 3 cut(s) 692, 1162, 1167
CviQI GTAC 1 cut(s) 1133
DdeI CTNAG 5 cut(s) 348, 596, 618, 1097, 1106
DpnI GATC 2 cut(s) 25, 1077
DpnII GATC 2 cut(s) 23, 1075
DraIII CACNNNGTG 1 cut(s) 464
EaeI YGGCCR 1 cut(s) 729
Eam1104I CTCTTC 3 cut(s) 110, 153, 246
EarI CTCTTC 3 cut(s) 110, 153, 246
EciI GGCGGA 2 cut(s) 16, 1026
Eco24I GRGCYC 1 cut(s) 293
Eco88I CYCGRG 1 cut(s) 842
EcoNI CCTNNNNNAGG 1 cut(s) 908
EcoO109I RGGNCCY 1 cut(s) 893
EcoRI GAATTC 2 cut(s) 274, 454
EcoRII CCWGG 3 cut(s) 562, 638, 895
EcoT38I GRGCYC 1 cut(s) 293
Esp3I CGTCTC 1 cut(s) 274
FaeI CATG 3 cut(s) 695, 1165, 1170
FalI AAGNNNNNCTT 2 cut(s) 516, 548
FaqI GGGAC 1 cut(s) 859
FatI CATG 3 cut(s) 691, 1161, 1166
FauI CCCGC 1 cut(s) 1122
FbaI TGATCA 1 cut(s) 1075
Fnu4HI GCNGC 6 cut(s) 6, 30, 181, 345, 684, 744
FokI GGATG 6 cut(s) 458, 588, 680, 800, 1026, 1166
FriOI GRGCYC 1 cut(s) 293
Fsp4HI GCNGC 6 cut(s) 6, 30, 181, 345, 684, 744
FspBI CTAG 4 cut(s) 461, 554, 884, 1136
GlaI GCGC 2 cut(s) 127, 184
GluI GCNGC 6 cut(s) 6, 30, 181, 345, 684, 744
GsuI CTGGAG 1 cut(s) 918
HaeII RGCGCY 1 cut(s) 186
HaeIII GGCC 3 cut(s) 731, 856, 894
HapII CCGG 2 cut(s) 499, 843
HgaI GACGC 4 cut(s) 107, 167, 227, 923
HhaI GCGC 2 cut(s) 128, 185
Hin1I GRCGYC 1 cut(s) 118
Hin1II CATG 3 cut(s) 695, 1165, 1170
Hin6I GCGC 2 cut(s) 126, 183
HinP1I GCGC 2 cut(s) 126, 183
HinfI GANTC 3 cut(s) 338, 791, 900
HpaII CCGG 2 cut(s) 499, 843
HphI GGTGA 1 cut(s) 75
Hpy166II GTNNAC 1 cut(s) 430
Hpy188I TCNGA 9 cut(s) 76, 286, 351, 656, 762, 796, 997, 1080, 1100
Hpy188III TCNNGA 7 cut(s) 55, 188, 271, 569, 578, 785, 862
Hpy8I GTNNAC 1 cut(s) 430
Hpy99I CGWCG 5 cut(s) 123, 137, 161, 218, 221
HpyAV CCTTC 2 cut(s) 346, 884
HpyCH4III ACNGT 3 cut(s) 335, 420, 758
HpyF10VI GCNNNNNNNGC 7 cut(s) 26, 353, 407, 683, 926, 985, 1091
HpyF3I CTNAG 5 cut(s) 348, 596, 618, 1097, 1106
Hsp92I GRCGYC 1 cut(s) 118
Hsp92II CATG 3 cut(s) 695, 1165, 1170
HspAI GCGC 2 cut(s) 126, 183
Ksp22I TGATCA 1 cut(s) 1075
Kzo9I GATC 2 cut(s) 23, 1075
LguI GCTCTTC 1 cut(s) 110
LmnI GCTCC 2 cut(s) 326, 722
Lsp1109I GCAGC 3 cut(s) 331, 695, 730
LweI GCATC 5 cut(s) 230, 480, 706, 1001, 1144
MabI ACCWGGT 1 cut(s) 638
MaeI CTAG 4 cut(s) 461, 554, 884, 1136
MaeIII GTNAC 2 cut(s) 802, 1142
MalI GATC 2 cut(s) 25, 1077
MboI GATC 2 cut(s) 23, 1075
MboII GAAGA 4 cut(s) 97, 140, 233, 249
MfeI CAATTG 1 cut(s) 447
MhlI GDGCHC 2 cut(s) 293, 630
MlsI TGGCCA 1 cut(s) 731
MluCI AATT 8 cut(s) 191, 274, 364, 389, 447, 454, 481, 573
MluNI TGGCCA 1 cut(s) 731
MlyI GAGTC 2 cut(s) 347, 909
MmeI TCCRAC 1 cut(s) 99
Mox20I TGGCCA 1 cut(s) 731
MscI TGGCCA 1 cut(s) 731
MseI TTAA 2 cut(s) 635, 815
Msp20I TGGCCA 1 cut(s) 731
MspA1I CMGCKG 2 cut(s) 344, 743
MspI CCGG 2 cut(s) 499, 843
MspR9I CCNGG 5 cut(s) 564, 640, 843, 844, 897
MunI CAATTG 1 cut(s) 447
Mva1269I GAATGC 3 cut(s) 401, 1087, 1096
MvaI CCWGG 3 cut(s) 564, 640, 897
MwoI GCNNNNNNNGC 7 cut(s) 26, 353, 407, 683, 926, 985, 1091
NciI CCSGG 2 cut(s) 843, 844
NdeII GATC 2 cut(s) 23, 1075
NlaIII CATG 3 cut(s) 695, 1165, 1170
NlaIV GGNNCC 1 cut(s) 378
NmeAIII GCCGAG 2 cut(s) 156, 274
NmuCI GTSAC 1 cut(s) 802
NspI RCATGY 2 cut(s) 695, 1165
NspV TTCGAA 1 cut(s) 405
PaeI GCATGC 1 cut(s) 1165
PciSI GCTCTTC 1 cut(s) 110
PcsI WCGNNNNNNNCGW 1 cut(s) 411
PctI GAATGC 3 cut(s) 401, 1087, 1096
PfeI GAWTC 1 cut(s) 791
PflFI GACNNNGTC 1 cut(s) 61
PkrI GCNGC 6 cut(s) 7, 31, 182, 346, 685, 745
PleI GAGTC 2 cut(s) 346, 908
PpsI GAGTC 2 cut(s) 346, 908
PshAI GACNNNNGTC 2 cut(s) 253, 266
Psp6I CCWGG 3 cut(s) 562, 638, 895
PspGI CCWGG 3 cut(s) 562, 638, 895
PspN4I GGNNCC 1 cut(s) 378
PspPI GGNCC 1 cut(s) 893
PstI CTGCAG 1 cut(s) 748
PsyI GACNNNGTC 1 cut(s) 61
PvuII CAGCTG 1 cut(s) 344
RsaI GTAC 1 cut(s) 1134
RsaNI GTAC 1 cut(s) 1133
SapI GCTCTTC 1 cut(s) 110
SaqAI TTAA 2 cut(s) 635, 815
SatI GCNGC 6 cut(s) 6, 30, 181, 345, 684, 744
Sau3AI GATC 2 cut(s) 23, 1075
Sau96I GGNCC 1 cut(s) 893
SchI GAGTC 2 cut(s) 347, 909
ScrFI CCNGG 5 cut(s) 564, 640, 843, 844, 897
SduI GDGCHC 2 cut(s) 293, 630
SexAI ACCWGGT 1 cut(s) 638
SfaNI GCATC 5 cut(s) 230, 480, 706, 1001, 1144
SfcI CTRYAG 1 cut(s) 744
SfuI TTCGAA 1 cut(s) 405
SmaI CCCGGG 1 cut(s) 844
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
SphI GCATGC 1 cut(s) 1165
Sse9I AATT 8 cut(s) 191, 274, 364, 389, 447, 454, 481, 573
SsiI CCGC 9 cut(s) 5, 27, 30, 180, 374, 741, 973, 1011, 1129
SspMI CTAG 4 cut(s) 461, 554, 884, 1136
StyD4I CCNGG 5 cut(s) 562, 638, 841, 842, 895
TaaI ACNGT 3 cut(s) 335, 420, 758
TaqI TCGA 7 cut(s) 224, 260, 272, 405, 414, 808, 1067
TasI AATT 8 cut(s) 191, 274, 364, 389, 447, 454, 481, 573
TauI GCSGC 3 cut(s) 8, 32, 183
TfiI GAWTC 1 cut(s) 791
Tru1I TTAA 2 cut(s) 635, 815
Tru9I TTAA 2 cut(s) 635, 815
TscAI CASTG 4 cut(s) 340, 626, 669, 732
TseFI GTSAC 1 cut(s) 802
TseI GCWGC 3 cut(s) 344, 683, 743
Tsp45I GTSAC 1 cut(s) 802
TspGWI ACGGA 1 cut(s) 121
TspMI CCCGGG 1 cut(s) 842
TspRI CASTG 4 cut(s) 340, 626, 669, 732
Tth111I GACNNNGTC 1 cut(s) 61
XagI CCTNNNNNAGG 1 cut(s) 908
XapI RAATTY 3 cut(s) 274, 454, 573
XceI RCATGY 2 cut(s) 695, 1165
XmaI CCCGGG 1 cut(s) 842
XspI CTAG 4 cut(s) 461, 554, 884, 1136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.