Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0008762

Physical Location & Seq

Genomic Coordinates Reverse (-)

23861651 .. 23866914

Gene Structure 5264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00019520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGCGGCGACTTCCATTGCTCGATCCGCCGCGACTCATCTCTCACCACCTCTGCCATCTAAGCCCTCGCCGTCTGATCACTTCCCTAGAACAACACTAAAGTTCTGCCCGAAACGGCGTCGTTGTGCCGTCGTCCTGGCTTCTCTTCACGGAGACGGAAACGGAAACGGCAAAAGCCACCACCAGGTCGGCGGTGCTCTGGATTTGGAAGACTTGCCGTTCGACGACGCATCCAAAGACCTGCACACTCTTCCAAGACCTTTGTCTTCGACTTTCGCCTCCAATTCGGTTGCTGAGGGCTCTCGTCTTCGTGTTGCGTATCAGGGTGTTCAAGGAGCATACAGTGAGTCAGCTGCTCAAAAGGCATACCCAAATTGCGAAGCAGTGCCTTGCGAACAATTTGATACTGTATTTGAGGCTGTTGAACGGTGGCTTGTGGACAGAGCAGTTTTACCATTTGAGAATTCATTAGGTGGTAGCATCCACAGAAATTATGACCTTATACTCCGGCATAGATTGCATATAGTAGGGGAAGTGAAACTTGCAGTTCGACATTGCTTACTAGCTAACCATGGTCTTGAAATTCAAGACCTAAAAAGGGTTCTCAGCCATCCACAGGCTCTTGCTCAGTGTGAGCACACATTAACCAGGTTTGGATTAGTCAGAGAAGCAGTGGATGATACTGCTGGTGCAGCAAAGCATGTTGCATTCCACAAACTGAAAGATTCAGGAGCAGTGGCCAGCTCTGCTGCTGCAGGGATATACGGTCTGAAGATACTTGCAGAGGATATTCAGGATGATAGTGATAATGTTACTCGATTTTTAGTCCTTGCAAGAGAACCTATCATTCCTGGCACAGATAGGCCATTTAAGACGAGTATAGTTTTCTCTCTAGAGGAAGGCCCGGGAGTCCTTTTAAGGCACTTGCTGTTTTTGCATTGCGTCAAATCAATCTTACAAAGATTGAGAGCCGTCCCTTGCGGAAGCAGCCCTTGCGAGCATCTGATGATAATAATGGTGGAATTCCAAAACCAAAATACTTTGACTATCTTTTCTATGTGGATTTTGAAACATCGATGGCTGATCATAATGCACAGAACGCCCTTAGGCATCTCAGGGAGTTTGCTACATTCTTGCGGGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004664 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006558 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009094 GO:0009095 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0017144 GO:0019438 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0047769 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902221 GO:1902223

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

PDT

Protein Analysis

381

Amino Acids

41.82

Weight (kDa)

8.32

Isoelectric Point (pI)

41.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDT	PF00800	105 - 280	5.4e-60	Prephenate dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07630 AT3G07630 AT3G07630
fragaria_vesca	FvH4_3g33680 FvH4_3g33680 FvH4_3g33680
malus_domestica	MD03G1109900.v1.1 MD11G1123300.v1.1
prunus_persica	Prupe.6G092500_v2.0.a1 Prupe.6G092500_v2.0.a1 Prupe.6G092500_v2.0.a1
pyrus_communis	pycom11g10410
rosa_chinensis	RchiOBHm_Chr5g0061191
rosa_laevigata	RLG00000003542 RLG00000035438
rosa_multiflora	Rmu_sc0001366.1_g000019
rosa_roxburghii	Rroxscaffold_1G00019520
rosa_rugosa	Rorug05G0338500
rosa_samantha	Rh5AG399300 Rh5BG412500 Rh5CG437200 Rh5DG426800
rosa_wichuraiana	Rw5G037670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	249
AccII	CGCG	1 cut(s)	32
AciI	CCGC	6 cut(s)	5, 27, 30, 192, 981, 1137
AclWI	GGATC	1 cut(s)	18
AcoI	YGGCCR	1 cut(s)	738
AcsI	RAATTY	3 cut(s)	463, 582, 1022
AcuI	CTGAAG	1 cut(s)	791
AcyI	GRCGYC	1 cut(s)	118
AfaI	GTAC	1 cut(s)	1142
AfiI	CCNNNNNNNGG	3 cut(s)	184, 598, 616
AgsI	TTSAA	5 cut(s)	332, 425, 581, 587, 1069
AjnI	CCWGG	4 cut(s)	135, 183, 647, 850
AluBI	AGCT	3 cut(s)	353, 566, 744
AluI	AGCT	3 cut(s)	353, 566, 744
Alw21I	GWGCWC	2 cut(s)	199, 639
Alw26I	GTCTC	1 cut(s)	147
AlwI	GGATC	1 cut(s)	18
Ama87I	CYCGRG	1 cut(s)	904
AoxI	GGCC	3 cut(s)	738, 863, 901
ApeKI	GCWGC	5 cut(s)	353, 692, 749, 752, 987
ApoI	RAATTY	3 cut(s)	463, 582, 1022
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
AspS9I	GGNCC	1 cut(s)	902
AsuC2I	CCSGG	2 cut(s)	905, 906
AsuHPI	GGTGA	1 cut(s)	36
AvaI	CYCGRG	1 cut(s)	904
AxyI	CCTNAGG	1 cut(s)	1105
BalI	TGGCCA	1 cut(s)	740
BanII	GRGCYC	1 cut(s)	302
BbsI	GAAGAC	3 cut(s)	216, 258, 299
Bbv12I	GWGCWC	2 cut(s)	199, 639
BbvCI	CCTCAGC	1 cut(s)	294
BbvI	GCAGC	5 cut(s)	340, 704, 736, 739, 999
BccI	CCATC	3 cut(s)	64, 618, 1071
BceAI	ACGGC	6 cut(s)	55, 113, 131, 184, 202, 956
BciT130I	CCWGG	4 cut(s)	137, 185, 649, 852
BclI	TGATCA	2 cut(s)	76, 1083
BcnI	CCSGG	2 cut(s)	905, 906
BcoDI	GTCTC	1 cut(s)	147
BfaI	CTAG	4 cut(s)	87, 563, 893, 1144
BfmI	CTRYAG	1 cut(s)	753
BfuAI	ACCTGC	1 cut(s)	249
BisI	GCNGC	7 cut(s)	6, 30, 354, 693, 750, 753, 988
BlsI	GCNGC	7 cut(s)	7, 31, 355, 694, 751, 754, 989
Bme1390I	CCNGG	6 cut(s)	137, 185, 649, 852, 905, 906
BmeT110I	CYCGRG	1 cut(s)	904
BmgT120I	GGNCC	1 cut(s)	902
BmrFI	CCNGG	6 cut(s)	137, 185, 649, 852, 905, 906
BmsI	GCATC	4 cut(s)	239, 489, 1009, 1119
BoxI	GACNNNNGTC	1 cut(s)	262
BpiI	GAAGAC	3 cut(s)	216, 258, 299
Bpu10I	CCTNAGC	1 cut(s)	294
BpuMI	CCSGG	2 cut(s)	905, 906
Bsa29I	ATCGAT	1 cut(s)	1075
BsaHI	GRCGYC	1 cut(s)	118
BsaJI	CCNNGG	2 cut(s)	571, 904
Bsc4I	CCNNNNNNNGG	3 cut(s)	184, 598, 616
Bse21I	CCTNAGG	1 cut(s)	1105
Bse3DI	GCAATG	3 cut(s)	15, 553, 937
BseBI	CCWGG	4 cut(s)	137, 185, 649, 852
BseCI	ATCGAT	1 cut(s)	1075
BseDI	CCNNGG	2 cut(s)	571, 904
BseGI	GGATG	5 cut(s)	230, 480, 610, 682, 802
BseLI	CCNNNNNNNGG	3 cut(s)	184, 598, 616
BseMI	GCAATG	3 cut(s)	15, 553, 937
BseMII	CTCAG	4 cut(s)	285, 619, 641, 1128
BseXI	GCAGC	5 cut(s)	340, 704, 736, 739, 999
BsgI	GTGCAG	2 cut(s)	227, 711
Bsh1236I	CGCG	1 cut(s)	32
BshFI	GGCC	3 cut(s)	740, 865, 903
BshVI	ATCGAT	1 cut(s)	1075
BsiHKAI	GWGCWC	2 cut(s)	199, 639
BsiHKCI	CYCGRG	1 cut(s)	904
BsiSI	CCGG	2 cut(s)	508, 905
BslFI	GGGAC	1 cut(s)	959
BslI	CCNNNNNNNGG	3 cut(s)	184, 598, 616
BsmAI	GTCTC	1 cut(s)	147
BsmBI	CGTCTC	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	959
BsmI	GAATGC	1 cut(s)	707
BsnI	GGCC	3 cut(s)	740, 865, 903
BsoBI	CYCGRG	1 cut(s)	904
Bsp1286I	GDGCHC	3 cut(s)	199, 302, 639
Bsp143I	GATC	3 cut(s)	23, 76, 1083
Bsp19I	CCATGG	1 cut(s)	571
BspACI	CCGC	6 cut(s)	5, 27, 30, 192, 981, 1137
BspANI	GGCC	3 cut(s)	740, 865, 903
BspCNI	CTCAG	4 cut(s)	286, 618, 640, 1127
BspDI	ATCGAT	1 cut(s)	1075
BspFNI	CGCG	1 cut(s)	32
BspMAI	CTGCAG	1 cut(s)	757
BspMI	ACCTGC	1 cut(s)	249
BspPI	GGATC	1 cut(s)	18
BsrDI	GCAATG	3 cut(s)	15, 553, 937
BssECI	CCNNGG	2 cut(s)	571, 904
BssMI	GATC	3 cut(s)	23, 76, 1083
BssNI	GRCGYC	1 cut(s)	118
BssT1I	CCWWGG	1 cut(s)	571
Bst2UI	CCWGG	4 cut(s)	137, 185, 649, 852
Bst4CI	ACNGT	4 cut(s)	344, 409, 429, 767
Bst6I	CTCTTC	2 cut(s)	150, 255
BstACI	GRCGYC	1 cut(s)	118
BstAPI	GCANNNNNTGC	2 cut(s)	517, 993
BstC8I	GCNNGC	2 cut(s)	742, 998
BstDEI	CTNAG	6 cut(s)	60, 294, 605, 627, 1105, 1114
BstDSI	CCRYGG	1 cut(s)	571
BstF5I	GGATG	5 cut(s)	230, 480, 610, 682, 802
BstFNI	CGCG	1 cut(s)	32
BstKTI	GATC	3 cut(s)	26, 79, 1086
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	3 cut(s)	23, 76, 1083
BstNI	CCWGG	4 cut(s)	137, 185, 649, 852
BstNSI	RCATGY	1 cut(s)	704
BstPAI	GACNNNNGTC	1 cut(s)	262
BstSCI	CCNGG	6 cut(s)	135, 183, 647, 850, 903, 904
BstSFI	CTRYAG	1 cut(s)	753
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	5 cut(s)	340, 704, 736, 739, 999
BstV2I	GAAGAC	3 cut(s)	216, 258, 299
Bsu15I	ATCGAT	1 cut(s)	1075
Bsu36I	CCTNAGG	1 cut(s)	1105
BsuRI	GGCC	3 cut(s)	740, 865, 903
BsuTUI	ATCGAT	1 cut(s)	1075
BtgI	CCRYGG	1 cut(s)	571
BtsCI	GGATG	5 cut(s)	230, 480, 610, 682, 802
BtsI	GCAGTG	3 cut(s)	390, 678, 741
BtsIMutI	CAGTG	5 cut(s)	349, 390, 635, 678, 741
BveI	ACCTGC	1 cut(s)	249
Cac8I	GCNNGC	2 cut(s)	742, 998
Cfr13I	GGNCC	1 cut(s)	902
Cfr9I	CCCGGG	1 cut(s)	904
ClaI	ATCGAT	1 cut(s)	1075
CseI	GACGC	3 cut(s)	107, 236, 931
CsiI	ACCWGGT	2 cut(s)	183, 647
Csp6I	GTAC	1 cut(s)	1141
CviAII	CATG	2 cut(s)	572, 701
CviQI	GTAC	1 cut(s)	1141
DdeI	CTNAG	6 cut(s)	60, 294, 605, 627, 1105, 1114
DpnI	GATC	3 cut(s)	25, 78, 1085
DpnII	GATC	3 cut(s)	23, 76, 1083
EaeI	YGGCCR	1 cut(s)	738
Eam1104I	CTCTTC	2 cut(s)	150, 255
EarI	CTCTTC	2 cut(s)	150, 255
EciI	GGCGGA	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	571
Eco24I	GRGCYC	1 cut(s)	302
Eco57I	CTGAAG	1 cut(s)	791
Eco81I	CCTNAGG	1 cut(s)	1105
Eco88I	CYCGRG	1 cut(s)	904
EcoRI	GAATTC	2 cut(s)	463, 1022
EcoRII	CCWGG	4 cut(s)	135, 183, 647, 850
EcoT14I	CCWWGG	1 cut(s)	571
EcoT38I	GRGCYC	1 cut(s)	302
ErhI	CCWWGG	1 cut(s)	571
Esp3I	CGTCTC	1 cut(s)	147
FaeI	CATG	2 cut(s)	575, 704
FalI	AAGNNNNNCTT	4 cut(s)	525, 557, 976, 1008
FaqI	GGGAC	1 cut(s)	959
FatI	CATG	2 cut(s)	571, 700
FauI	CCCGC	1 cut(s)	1130
FbaI	TGATCA	2 cut(s)	76, 1083
Fnu4HI	GCNGC	7 cut(s)	6, 30, 354, 693, 750, 753, 988
FokI	GGATG	5 cut(s)	217, 467, 597, 689, 809
FriOI	GRGCYC	1 cut(s)	302
Fsp4HI	GCNGC	7 cut(s)	6, 30, 354, 693, 750, 753, 988
FspBI	CTAG	4 cut(s)	87, 563, 893, 1144
GluI	GCNGC	7 cut(s)	6, 30, 354, 693, 750, 753, 988
HaeIII	GGCC	3 cut(s)	740, 865, 903
HapII	CCGG	2 cut(s)	508, 905
HgaI	GACGC	3 cut(s)	107, 236, 931
Hin1I	GRCGYC	1 cut(s)	118
Hin1II	CATG	2 cut(s)	575, 704
HinfI	GANTC	4 cut(s)	34, 347, 725, 909
HpaII	CCGG	2 cut(s)	508, 905
HphI	GGTGA	1 cut(s)	36
Hpy166II	GTNNAC	1 cut(s)	439
Hpy188I	TCNGA	4 cut(s)	76, 665, 771, 1005
Hpy188III	TCNNGA	6 cut(s)	200, 578, 587, 729, 794, 893
Hpy8I	GTNNAC	1 cut(s)	439
Hpy99I	CGWCG	4 cut(s)	123, 134, 227, 230
HpyAV	CCTTC	1 cut(s)	893
HpyCH4III	ACNGT	4 cut(s)	344, 409, 429, 767
HpyF3I	CTNAG	6 cut(s)	60, 294, 605, 627, 1105, 1114
Hsp92I	GRCGYC	1 cut(s)	118
Hsp92II	CATG	2 cut(s)	575, 704
Ksp22I	TGATCA	2 cut(s)	76, 1083
Kzo9I	GATC	3 cut(s)	23, 76, 1083
LmnI	GCTCC	2 cut(s)	335, 731
Lsp1109I	GCAGC	5 cut(s)	340, 704, 736, 739, 999
LweI	GCATC	4 cut(s)	239, 489, 1009, 1119
MabI	ACCWGGT	2 cut(s)	183, 647
MaeI	CTAG	4 cut(s)	87, 563, 893, 1144
MaeIII	GTNAC	1 cut(s)	811
MalI	GATC	3 cut(s)	25, 78, 1085
MboI	GATC	3 cut(s)	23, 76, 1083
MboII	GAAGA	6 cut(s)	137, 221, 242, 258, 299, 784
MhlI	GDGCHC	3 cut(s)	199, 302, 639
MlsI	TGGCCA	1 cut(s)	740
MluCI	AATT	7 cut(s)	283, 373, 398, 463, 490, 582, 1022
MluNI	TGGCCA	1 cut(s)	740
MlyI	GAGTC	3 cut(s)	28, 356, 918
MnlI	CCTC	7 cut(s)	60, 76, 289, 289, 409, 778, 889
Mox20I	TGGCCA	1 cut(s)	740
MscI	TGGCCA	1 cut(s)	740
MseI	TTAA	3 cut(s)	644, 870, 917
Msp20I	TGGCCA	1 cut(s)	740
MspA1I	CMGCKG	1 cut(s)	353
MspI	CCGG	2 cut(s)	508, 905
MspR9I	CCNGG	6 cut(s)	137, 185, 649, 852, 905, 906
Mva1269I	GAATGC	1 cut(s)	707
MvaI	CCWGG	4 cut(s)	137, 185, 649, 852
MvnI	CGCG	1 cut(s)	32
NciI	CCSGG	2 cut(s)	905, 906
NcoI	CCATGG	1 cut(s)	571
NdeII	GATC	3 cut(s)	23, 76, 1083
NlaIII	CATG	2 cut(s)	575, 704
NspI	RCATGY	1 cut(s)	704
PctI	GAATGC	1 cut(s)	707
PfeI	GAWTC	1 cut(s)	725
PkrI	GCNGC	7 cut(s)	7, 31, 355, 694, 751, 754, 989
PleI	GAGTC	3 cut(s)	28, 355, 917
PpsI	GAGTC	3 cut(s)	28, 355, 917
PshAI	GACNNNNGTC	1 cut(s)	262
Psp6I	CCWGG	4 cut(s)	135, 183, 647, 850
PspGI	CCWGG	4 cut(s)	135, 183, 647, 850
PspPI	GGNCC	1 cut(s)	902
PstI	CTGCAG	1 cut(s)	757
PvuII	CAGCTG	1 cut(s)	353
RsaI	GTAC	1 cut(s)	1142
RsaNI	GTAC	1 cut(s)	1141
SaqAI	TTAA	3 cut(s)	644, 870, 917
SatI	GCNGC	7 cut(s)	6, 30, 354, 693, 750, 753, 988
Sau3AI	GATC	3 cut(s)	23, 76, 1083
Sau96I	GGNCC	1 cut(s)	902
SchI	GAGTC	3 cut(s)	28, 356, 918
ScrFI	CCNGG	6 cut(s)	137, 185, 649, 852, 905, 906
SduI	GDGCHC	3 cut(s)	199, 302, 639
SexAI	ACCWGGT	2 cut(s)	183, 647
SfaNI	GCATC	4 cut(s)	239, 489, 1009, 1119
SfcI	CTRYAG	1 cut(s)	753
SmaI	CCCGGG	1 cut(s)	906
Sse9I	AATT	7 cut(s)	283, 373, 398, 463, 490, 582, 1022
SsiI	CCGC	6 cut(s)	5, 27, 30, 192, 981, 1137
SspMI	CTAG	4 cut(s)	87, 563, 893, 1144
StyD4I	CCNGG	6 cut(s)	135, 183, 647, 850, 903, 904
StyI	CCWWGG	1 cut(s)	571
TaaI	ACNGT	4 cut(s)	344, 409, 429, 767
TaqI	TCGA	6 cut(s)	22, 222, 269, 550, 817, 1075
TasI	AATT	7 cut(s)	283, 373, 398, 463, 490, 582, 1022
TauI	GCSGC	2 cut(s)	8, 32
TfiI	GAWTC	1 cut(s)	725
Tru1I	TTAA	3 cut(s)	644, 870, 917
Tru9I	TTAA	3 cut(s)	644, 870, 917
TscAI	CASTG	5 cut(s)	349, 390, 635, 678, 741
TseI	GCWGC	5 cut(s)	353, 692, 749, 752, 987
TspDTI	ATGAA	1 cut(s)	456
TspGWI	ACGGA	3 cut(s)	165, 171, 177
TspMI	CCCGGG	1 cut(s)	904
TspRI	CASTG	5 cut(s)	349, 390, 635, 678, 741
XapI	RAATTY	3 cut(s)	463, 582, 1022
XbaI	TCTAGA	1 cut(s)	892
XceI	RCATGY	1 cut(s)	704
XmaI	CCCGGG	1 cut(s)	904
XspI	CTAG	4 cut(s)	87, 563, 893, 1144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.