MD11G1123300.v1.1

Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Reverse (-)
11325437 .. 11330234
4798 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1123300.v1.1.491

Sequence Viewer

Length: 1206 bp
ATGGCGGCGTCTTCGGTGGAACGATCCGCCACAACCCCTTTCCCACGACACGTTGTATCGAAGCGCTTCCCTTCCGATCACTTCCCCAAACCAAATTTGAACTTCGAAATTCGCTCCAGACGCCGTCGTATGGGCCTGACCCTGGCCTCTCTTCGCTCAGACGACACCGCCAGAATCAGAAATTATGGCGGTGGTCACAGAAACCTGGTTGGAGGCGCTATGGAATTGGAGAGCGCCTTGGAGGACTTCCCTTACGACGTCGAATCAAAAGACATGCACACTCTCCCAAGACCTTTGTCTTCGACCCATCTCTCCAATTGGGTCTCTGATAGCTCCCGCCTTCGCGTTGCATATCAGGGGGTTCATGGAGCATACAGTGAATCAGCTGCGGAGAAAGCGTATCCAAATTGCGAAGCAGTGCCTTGTGAACAATTCGATACCGCTTTTGAGGCTGTTGAACGTTGGCTTGTGGACAGAGCAGTCTTACCAATTGAGAATTCATTAGGTGGAAGCATCCACAGAAACTACGACCTTTTACTCAGGCACAGGTTGCATATAGTAGGGGAAGTGAAACTTGCAGTTCGCCATTGCTTACTGGCTAACCATGGTGTTGAAATTGAAGGCCTAAAAAGGGTTCTTAGCCATCCACAGGCTCTTGATCAGTGTGAGAACACGTTAACGAAGCTGGGATTGGTCAGAGAAGCAGTGGACGATACTGCTGGTGCAGCAAAGCATGTTGCTTTCCACAAACTGAAGGATACAGGAGCTGTTGCCAGCTCAGCTGCTGCAGGCATATATGGTCTGCAAATACTTGCGCAGGATATTCAGGATGATTCTGACAATGTTACTCGGTTTCTAATGCTTGCTAGAGAACCAATTATTCCTGGCACAGATAGGCCATTCAAGACAAGTATAGTCTTCTCGCTAGAGGAAGGCCCTGGGGTCCTTTTCAAGGCTCTGGCTGTTTTTGCTTTGCGTCAAATCAATCTTACAAAGATTGAAAGCCGTCCTTTGCAGATGCAGCCCCTGCGAGCATCTGATGATAGTAACGGTGGATCTCCAAAGTACTTTGACTATCTTTTTTATGTGGATTTTGAAGCATCAATGGCTGATCAGAATGCACAAAATGCCCTTCGGCATCTCAAGGAGTTTGCAACATTCTTGCGGGTGCTAGGGAGTTACCCGATGGATACAAGCATGACATGA

Protein Analysis

402

Amino Acids

44.56

Weight (kDa)

6.57

Isoelectric Point (pI)

48.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDT PF00800 116 - 291 2.2e-59 Prephenate dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 479
AatII GACGTC 1 cut(s) 261
Acc16I TGCGCA 1 cut(s) 816
AccII CGCG 1 cut(s) 345
AciI CCGC 8 cut(s) 5, 27, 168, 189, 337, 389, 441, 1165
AclI AACGTT 1 cut(s) 460
AclWI GGATC 2 cut(s) 18, 1063
AcsI RAATTY 3 cut(s) 94, 108, 496
AcuI CTGAAG 1 cut(s) 773
AcyI GRCGYC 3 cut(s) 8, 121, 258
AfaI GTAC 1 cut(s) 1067
AfeI AGCGCT 1 cut(s) 65
AfiI CCNNNNNNNGG 5 cut(s) 130, 142, 631, 649, 952
AflIII ACRYGT 2 cut(s) 49, 672
AgsI TTSAA 8 cut(s) 100, 458, 614, 620, 904, 952, 1001, 1097
AjnI CCWGG 4 cut(s) 141, 204, 883, 937
AjuI GAANNNNNNNTTGG 4 cut(s) 481, 513, 674, 706
AluBI AGCT 6 cut(s) 333, 386, 685, 767, 777, 782
AluI AGCT 6 cut(s) 333, 386, 685, 767, 777, 782
Alw26I GTCTC 1 cut(s) 328
AlwI GGATC 2 cut(s) 18, 1063
AlwNI CAGNNNCTG 3 cut(s) 767, 785, 1027
Aor51HI AGCGCT 1 cut(s) 65
AoxI GGCC 5 cut(s) 133, 144, 622, 896, 934
ApeKI GCWGC 5 cut(s) 386, 725, 782, 785, 1021
ApoI RAATTY 3 cut(s) 94, 108, 496
Asp700I GAANNNNTTC 1 cut(s) 65
AspLEI GCGC 4 cut(s) 66, 218, 236, 817
AspS9I GGNCC 3 cut(s) 133, 935, 943
AsuII TTCGAA 1 cut(s) 105
AvaII GGWCC 1 cut(s) 943
BbsI GAAGAC 3 cut(s) 3, 291, 910
BbvI GCAGC 5 cut(s) 373, 737, 769, 772, 1033
BccI CCATC 3 cut(s) 315, 651, 1180
BceAI ACGGC 2 cut(s) 108, 990
BciT130I CCWGG 4 cut(s) 143, 206, 885, 939
BciVI GTATCC 3 cut(s) 411, 751, 1183
BclI TGATCA 2 cut(s) 658, 1111
BcoDI GTCTC 1 cut(s) 328
BfaI CTAG 3 cut(s) 867, 926, 1172
BfmI CTRYAG 1 cut(s) 786
BfoI RGCGCY 3 cut(s) 67, 219, 237
BfuI GTATCC 3 cut(s) 411, 751, 1183
BisI GCNGC 6 cut(s) 6, 387, 726, 783, 786, 1022
BlpI GCTNAGC 1 cut(s) 778
BlsI GCNGC 6 cut(s) 7, 388, 727, 784, 787, 1023
BmcAI AGTACT 1 cut(s) 1067
Bme1390I CCNGG 4 cut(s) 143, 206, 885, 939
Bme18I GGWCC 1 cut(s) 943
BmgT120I GGNCC 3 cut(s) 133, 935, 943
BmiI GGNNCC 1 cut(s) 944
BmrFI CCNGG 4 cut(s) 143, 206, 885, 939
BmsI GCATC 5 cut(s) 522, 1008, 1043, 1109, 1147
BoxI GACNNNNGTC 1 cut(s) 295
BpiI GAAGAC 3 cut(s) 3, 291, 910
BpmI CTGGAG 1 cut(s) 100
Bpu1102I GCTNAGC 1 cut(s) 778
Bpu14I TTCGAA 1 cut(s) 105
BpuEI CTTGAG 1 cut(s) 1127
BsaHI GRCGYC 3 cut(s) 8, 121, 258
BsaI GGTCTC 1 cut(s) 328
BsaJI CCNNGG 5 cut(s) 141, 237, 604, 937, 938
BsaXI ACNNNNNCTCC 2 cut(s) 383, 413
Bsc4I CCNNNNNNNGG 5 cut(s) 130, 142, 631, 649, 952
Bse1I ACTGG 1 cut(s) 600
Bse3DI GCAATG 1 cut(s) 586
BseBI CCWGG 4 cut(s) 143, 206, 885, 939
BseDI CCNNGG 5 cut(s) 141, 237, 604, 937, 938
BseGI GGATG 3 cut(s) 513, 643, 835
BseLI CCNNNNNNNGG 5 cut(s) 130, 142, 631, 649, 952
BseMI GCAATG 1 cut(s) 586
BseMII CTCAG 3 cut(s) 171, 553, 792
BseNI ACTGG 1 cut(s) 600
BseXI GCAGC 5 cut(s) 373, 737, 769, 772, 1033
BseYI CCCAGC 1 cut(s) 685
BsgI GTGCAG 1 cut(s) 744
Bsh1236I CGCG 1 cut(s) 345
BshFI GGCC 5 cut(s) 135, 146, 624, 898, 936
BslI CCNNNNNNNGG 5 cut(s) 130, 142, 631, 649, 952
BsmAI GTCTC 1 cut(s) 328
BsmI GAATGC 1 cut(s) 1123
BsnI GGCC 5 cut(s) 135, 146, 624, 898, 936
Bso31I GGTCTC 1 cut(s) 328
Bsp119I TTCGAA 1 cut(s) 105
Bsp143I GATC 5 cut(s) 23, 76, 658, 1055, 1111
Bsp1720I GCTNAGC 1 cut(s) 778
Bsp19I CCATGG 1 cut(s) 604
BspACI CCGC 8 cut(s) 5, 27, 168, 189, 337, 389, 441, 1165
BspANI GGCC 5 cut(s) 135, 146, 624, 898, 936
BspCNI CTCAG 3 cut(s) 170, 552, 791
BspFNI CGCG 1 cut(s) 345
BspLI GGNNCC 1 cut(s) 944
BspMAI CTGCAG 1 cut(s) 790
BspPI GGATC 2 cut(s) 18, 1063
BspT104I TTCGAA 1 cut(s) 105
BspTNI GGTCTC 1 cut(s) 328
BsrDI GCAATG 1 cut(s) 586
BsrI ACTGG 1 cut(s) 600
BssECI CCNNGG 5 cut(s) 141, 237, 604, 937, 938
BssMI GATC 5 cut(s) 23, 76, 658, 1055, 1111
BssNI GRCGYC 3 cut(s) 8, 121, 258
BssT1I CCWWGG 2 cut(s) 237, 604
Bst2UI CCWGG 4 cut(s) 143, 206, 885, 939
Bst4CI ACNGT 2 cut(s) 377, 1052
Bst6I CTCTTC 1 cut(s) 156
BstACI GRCGYC 3 cut(s) 8, 121, 258
BstAPI GCANNNNNTGC 3 cut(s) 550, 1027, 1127
BstBI TTCGAA 1 cut(s) 105
BstC8I GCNNGC 4 cut(s) 775, 790, 864, 1032
BstDEI CTNAG 4 cut(s) 157, 539, 638, 778
BstDSI CCRYGG 1 cut(s) 604
BstENI CCTNNNNNAGG 1 cut(s) 950
BstF5I GGATG 3 cut(s) 513, 643, 835
BstFNI CGCG 1 cut(s) 345
BstH2I RGCGCY 3 cut(s) 67, 219, 237
BstHHI GCGC 4 cut(s) 66, 218, 236, 817
BstKTI GATC 5 cut(s) 26, 79, 661, 1058, 1114
BstMAI GTCTC 1 cut(s) 328
BstMBI GATC 5 cut(s) 23, 76, 658, 1055, 1111
BstNI CCWGG 4 cut(s) 143, 206, 885, 939
BstNSI RCATGY 2 cut(s) 277, 737
BstPAI GACNNNNGTC 1 cut(s) 295
BstSCI CCNGG 4 cut(s) 141, 204, 883, 937
BstSFI CTRYAG 1 cut(s) 786
BstUI CGCG 1 cut(s) 345
BstV1I GCAGC 5 cut(s) 373, 737, 769, 772, 1033
BstV2I GAAGAC 3 cut(s) 3, 291, 910
BstX2I RGATCY 1 cut(s) 1055
BstYI RGATCY 1 cut(s) 1055
BsuI GTATCC 3 cut(s) 411, 751, 1183
BsuRI GGCC 5 cut(s) 135, 146, 624, 898, 936
BtgI CCRYGG 1 cut(s) 604
BtsCI GGATG 3 cut(s) 513, 643, 835
BtsI GCAGTG 2 cut(s) 423, 711
BtsIMutI CAGTG 4 cut(s) 382, 423, 668, 711
Cac8I GCNNGC 4 cut(s) 775, 790, 864, 1032
CaiI CAGNNNCTG 3 cut(s) 767, 785, 1027
CfoI GCGC 4 cut(s) 66, 218, 236, 817
Cfr13I GGNCC 3 cut(s) 133, 935, 943
CseI GACGC 2 cut(s) 129, 965
CsiI ACCWGGT 1 cut(s) 204
Csp6I GTAC 1 cut(s) 1066
CviAII CATG 6 cut(s) 274, 365, 605, 734, 1198, 1203
CviQI GTAC 1 cut(s) 1066
DdeI CTNAG 4 cut(s) 157, 539, 638, 778
DpnI GATC 5 cut(s) 25, 78, 660, 1057, 1113
DpnII GATC 5 cut(s) 23, 76, 658, 1055, 1111
DrdI GACNNNNNNGTC 1 cut(s) 479
DseDI GACNNNNNNGTC 1 cut(s) 479
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
EciI GGCGGA 1 cut(s) 16
Eco130I CCWWGG 2 cut(s) 237, 604
Eco147I AGGCCT 1 cut(s) 624
Eco31I GGTCTC 1 cut(s) 328
Eco47I GGWCC 1 cut(s) 943
Eco47III AGCGCT 1 cut(s) 65
Eco57I CTGAAG 1 cut(s) 773
EcoNI CCTNNNNNAGG 1 cut(s) 950
EcoO109I RGGNCCY 2 cut(s) 935, 943
EcoRI GAATTC 1 cut(s) 496
EcoRII CCWGG 4 cut(s) 141, 204, 883, 937
EcoT14I CCWWGG 2 cut(s) 237, 604
ErhI CCWWGG 2 cut(s) 237, 604
FaeI CATG 6 cut(s) 277, 368, 608, 737, 1201, 1206
FalI AAGNNNNNCTT 4 cut(s) 558, 590, 994, 1026
FatI CATG 6 cut(s) 273, 364, 604, 733, 1197, 1202
FauI CCCGC 2 cut(s) 344, 1158
FbaI TGATCA 2 cut(s) 658, 1111
Fnu4HI GCNGC 6 cut(s) 6, 387, 726, 783, 786, 1022
FokI GGATG 3 cut(s) 500, 630, 842
Fsp4HI GCNGC 6 cut(s) 6, 387, 726, 783, 786, 1022
FspBI CTAG 3 cut(s) 867, 926, 1172
FspI TGCGCA 1 cut(s) 816
GlaI GCGC 4 cut(s) 65, 217, 235, 816
GluI GCNGC 6 cut(s) 6, 387, 726, 783, 786, 1022
GsaI CCCAGC 1 cut(s) 689
GsuI CTGGAG 1 cut(s) 100
HaeII RGCGCY 3 cut(s) 67, 219, 237
HaeIII GGCC 5 cut(s) 135, 146, 624, 898, 936
HgaI GACGC 2 cut(s) 129, 965
HhaI GCGC 4 cut(s) 66, 218, 236, 817
Hin1I GRCGYC 3 cut(s) 8, 121, 258
Hin1II CATG 6 cut(s) 277, 368, 608, 737, 1201, 1206
Hin6I GCGC 4 cut(s) 64, 216, 234, 815
HinP1I GCGC 4 cut(s) 64, 216, 234, 815
HincII GTYRAC 1 cut(s) 678
HindII GTYRAC 1 cut(s) 678
HinfI GANTC 4 cut(s) 174, 263, 380, 833
HpaI GTTAAC 1 cut(s) 678
Hpy166II GTNNAC 4 cut(s) 428, 472, 678, 709
Hpy188I TCNGA 8 cut(s) 76, 160, 179, 328, 698, 838, 1039, 1116
Hpy188III TCNNGA 4 cut(s) 117, 656, 827, 904
Hpy8I GTNNAC 4 cut(s) 428, 472, 678, 709
Hpy99I CGWCG 3 cut(s) 129, 260, 263
HpyAV CCTTC 6 cut(s) 81, 350, 614, 748, 926, 1142
HpyCH4III ACNGT 2 cut(s) 377, 1052
HpyCH4IV ACGT 4 cut(s) 51, 258, 460, 674
HpyF3I CTNAG 4 cut(s) 157, 539, 638, 778
HpySE526I ACGT 4 cut(s) 51, 258, 460, 674
Hsp92I GRCGYC 3 cut(s) 8, 121, 258
Hsp92II CATG 6 cut(s) 277, 368, 608, 737, 1201, 1206
HspAI GCGC 4 cut(s) 64, 216, 234, 815
Ksp22I TGATCA 2 cut(s) 658, 1111
KspAI GTTAAC 1 cut(s) 678
Kzo9I GATC 5 cut(s) 23, 76, 658, 1055, 1111
LmnI GCTCC 4 cut(s) 119, 338, 368, 764
Lsp1109I GCAGC 5 cut(s) 373, 737, 769, 772, 1033
LweI GCATC 5 cut(s) 522, 1008, 1043, 1109, 1147
MabI ACCWGGT 1 cut(s) 204
MaeI CTAG 3 cut(s) 867, 926, 1172
MaeII ACGT 4 cut(s) 51, 258, 460, 674
MaeIII GTNAC 4 cut(s) 194, 844, 1046, 1178
MalI GATC 5 cut(s) 25, 78, 660, 1057, 1113
MboI GATC 5 cut(s) 23, 76, 658, 1055, 1111
MboII GAAGA 4 cut(s) 3, 143, 291, 910
MfeI CAATTG 2 cut(s) 316, 489
MflI RGATCY 1 cut(s) 1055
MmeI TCCRAC 1 cut(s) 190
MnlI CCTC 5 cut(s) 157, 206, 235, 442, 922
MroXI GAANNNNTTC 1 cut(s) 65
MseI TTAA 1 cut(s) 677
MspA1I CMGCKG 2 cut(s) 386, 782
MspR9I CCNGG 4 cut(s) 143, 206, 885, 939
MunI CAATTG 2 cut(s) 316, 489
Mva1269I GAATGC 1 cut(s) 1123
MvaI CCWGG 4 cut(s) 143, 206, 885, 939
MvnI CGCG 1 cut(s) 345
NcoI CCATGG 1 cut(s) 604
NdeII GATC 5 cut(s) 23, 76, 658, 1055, 1111
NlaIII CATG 6 cut(s) 277, 368, 608, 737, 1201, 1206
NlaIV GGNNCC 1 cut(s) 944
NmuCI GTSAC 1 cut(s) 194
NsbI TGCGCA 1 cut(s) 816
NspI RCATGY 2 cut(s) 277, 737
NspV TTCGAA 1 cut(s) 105
PasI CCCWGGG 1 cut(s) 938
PceI AGGCCT 1 cut(s) 624
PctI GAATGC 1 cut(s) 1123
PdmI GAANNNNTTC 1 cut(s) 65
PfeI GAWTC 4 cut(s) 174, 263, 380, 833
PflFI GACNNNGTC 1 cut(s) 123
PkrI GCNGC 6 cut(s) 7, 388, 727, 784, 787, 1023
PpuMI RGGWCCY 1 cut(s) 943
PshAI GACNNNNGTC 1 cut(s) 295
Psp1406I AACGTT 1 cut(s) 460
Psp5II RGGWCCY 1 cut(s) 943
Psp6I CCWGG 4 cut(s) 141, 204, 883, 937
PspFI CCCAGC 1 cut(s) 685
PspGI CCWGG 4 cut(s) 141, 204, 883, 937
PspN4I GGNNCC 1 cut(s) 944
PspPI GGNCC 3 cut(s) 133, 935, 943
PspPPI RGGWCCY 1 cut(s) 943
PstI CTGCAG 1 cut(s) 790
PstNI CAGNNNCTG 3 cut(s) 767, 785, 1027
PsuI RGATCY 1 cut(s) 1055
PsyI GACNNNGTC 1 cut(s) 123
PvuII CAGCTG 2 cut(s) 386, 782
RsaI GTAC 1 cut(s) 1067
RsaNI GTAC 1 cut(s) 1066
SaqAI TTAA 1 cut(s) 677
SatI GCNGC 6 cut(s) 6, 387, 726, 783, 786, 1022
Sau3AI GATC 5 cut(s) 23, 76, 658, 1055, 1111
Sau96I GGNCC 3 cut(s) 133, 935, 943
ScaI AGTACT 1 cut(s) 1067
ScrFI CCNGG 4 cut(s) 143, 206, 885, 939
SexAI ACCWGGT 1 cut(s) 204
SfaNI GCATC 5 cut(s) 522, 1008, 1043, 1109, 1147
SfcI CTRYAG 1 cut(s) 786
SfuI TTCGAA 1 cut(s) 105
SinI GGWCC 1 cut(s) 943
SmlI CTYRAG 1 cut(s) 1142
SmoI CTYRAG 1 cut(s) 1142
SseBI AGGCCT 1 cut(s) 624
SsiI CCGC 8 cut(s) 5, 27, 168, 189, 337, 389, 441, 1165
SspMI CTAG 3 cut(s) 867, 926, 1172
StuI AGGCCT 1 cut(s) 624
StyD4I CCNGG 4 cut(s) 141, 204, 883, 937
StyI CCWWGG 2 cut(s) 237, 604
TaaI ACNGT 2 cut(s) 377, 1052
TaiI ACGT 4 cut(s) 54, 261, 463, 677
TaqI TCGA 5 cut(s) 59, 105, 261, 302, 435
TatI WGTACW 1 cut(s) 1065
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 4 cut(s) 174, 263, 380, 833
Tru1I TTAA 1 cut(s) 677
Tru9I TTAA 1 cut(s) 677
TscAI CASTG 4 cut(s) 382, 423, 668, 711
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 5 cut(s) 386, 725, 782, 785, 1021
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 2 cut(s) 353, 489
TspRI CASTG 4 cut(s) 382, 423, 668, 711
Tth111I GACNNNGTC 1 cut(s) 123
VpaK11BI GGWCC 1 cut(s) 943
XagI CCTNNNNNAGG 1 cut(s) 950
XapI RAATTY 3 cut(s) 94, 108, 496
XceI RCATGY 2 cut(s) 277, 737
XmnI GAANNNNTTC 1 cut(s) 65
XspI CTAG 3 cut(s) 867, 926, 1172
ZraI GACGTC 1 cut(s) 259
ZrmI AGTACT 1 cut(s) 1067
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.