RLG00000035438

Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
66961635 .. 66968767
7133 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035438

Sequence Viewer

Length: 1284 bp
ATGTTTTGGGTTTTGGGAAACCACCCATTTAACAACGTTATACTTGGCGAGCTTTTCCTTACAACCCATAGCAACTCCTCTCACTTGCAATCGAGATCCCCCAGTCCGCTATCGCCATTGCATAATGAAGAGTACTGGGATAACTTTCCAAAGAATATTGGGGGAGGATACCATTCCATCAACTCCAATGGATTAGTGTCAAAAACAATTGGAGTTAGTTTAGTGAGGCTCTCAACTTTGTCGTATGTCTTTGTTGCTCTTTATAGGTCGTCATCTGATAATTTTCTCTTCGTCGCCTTCCCCGCCAATCTCGGCTTCACCTTTCTCCGGCGCCGACCTGAACTCCACTCCACGCGCCATGGCGGCGACTTCCATTGCACGATCCGCCGCGACTCATCTCTCACCACCTATCCCATCGAAGCCCTCGCCGGTGTTCAAGGAGCATACAGTGAGTCAGCTGCGCAAAAGGCATACCCAAATTGCGAAGCAGTGCCTTGTGAACAATTTGATACTGTATTTGAGGCTGTTGAACGGTGGCTTGTGGACAGAGCAGTTTTACCATTTGAGAATTCATTAGGTGGTAGCATCCACAGAAATTATGACCTTATCCTCCGGCATAGATTACATATAGTAGGGGAAGTGAAACTTGCAGTTCGGCATTGCTTACTAGCTAACCATGGTGTTGAAATTCAAGACCTAAAAAGGGTTCTCAGCCATCCACAGGCTCTTGCTCAGTGTGAGCACACATTAACCAGGTTTGGATTAGTCAGAGAAGCAGTGGATGATACTGCTGGTGCAGCAAAGCATGTTGCATTCCACAAACTGAAAGATTCAGGAGCAGTGGCCAGCTCTGCTGCTGCAGGGATATACGGTCTGAAGATACTTGCAGAGGATATTCAGGATGATAGTGATAATGTTACTCGATTTTTAGTCCTTGCAAGAGAACCTATCATTCCTGGCACAGATAGGCCATTCAAGACGAGTATAGTTTTCTCTCTAGAGGAAGGCCCGGGAGTCCTTTTTAAGGCACTTGCTGTTTTTGCATTGCGTCAAATCAATCTTACAAAGATTGAGAGCCGTCCCTTGCGGAAGCAGCCCCTGCGAGCATCTGATGATAATAATGGTGGAATTCCAAAACCAAAATACTTTGACTATCTTTTCTATGTGGATTTTGAAACATCGATGGCTGATCATAATGCACAGAATGCCCTTAGGCATCTCAGGGAGTTTGCTACATTCTTGCGGGTACTAGGGAGTTACCCAATGGATGGAAGCATGCTATGA

Protein Analysis

428

Amino Acids

47.59

Weight (kDa)

7.04

Isoelectric Point (pI)

48.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDT PF00800 142 - 315 3.9e-58 Prephenate dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 462
AccB1I GGYRCC 1 cut(s) 330
AccB7I CCANNNNNTGG 1 cut(s) 1268
AccII CGCG 2 cut(s) 355, 390
AciI CCGC 7 cut(s) 107, 303, 363, 385, 388, 1087, 1243
AclI AACGTT 1 cut(s) 36
AclWI GGATC 2 cut(s) 90, 376
AcoI YGGCCR 1 cut(s) 843
AcsI RAATTY 3 cut(s) 568, 687, 1128
AcuI CTGAAG 1 cut(s) 896
AcyI GRCGYC 1 cut(s) 331
AfaI GTAC 2 cut(s) 134, 1248
AfiI CCNNNNNNNGG 5 cut(s) 327, 703, 721, 1024, 1268
AgsI TTSAA 6 cut(s) 437, 530, 686, 692, 976, 1175
AjnI CCWGG 2 cut(s) 752, 955
AjuI GAANNNNNNNTTGG 2 cut(s) 299, 331
AluBI AGCT 4 cut(s) 52, 458, 671, 849
AluI AGCT 4 cut(s) 52, 458, 671, 849
Alw21I GWGCWC 1 cut(s) 744
AlwI GGATC 2 cut(s) 90, 376
AlwNI CAGNNNCTG 1 cut(s) 1099
Ama87I CYCGRG 1 cut(s) 1009
AoxI GGCC 3 cut(s) 843, 968, 1006
ApeKI GCWGC 5 cut(s) 458, 797, 854, 857, 1093
ApoI RAATTY 3 cut(s) 568, 687, 1128
AspLEI GCGC 3 cut(s) 333, 357, 463
AspS9I GGNCC 1 cut(s) 1007
AsuC2I CCSGG 2 cut(s) 1010, 1011
AsuHPI GGTGA 2 cut(s) 310, 394
AvaI CYCGRG 1 cut(s) 1009
AxyI CCTNAGG 1 cut(s) 1211
BalI TGGCCA 1 cut(s) 845
BanI GGYRCC 1 cut(s) 330
Bbv12I GWGCWC 1 cut(s) 744
BbvI GCAGC 5 cut(s) 445, 809, 841, 844, 1105
BccI CCATC 5 cut(s) 185, 422, 723, 1177, 1262
BceAI ACGGC 1 cut(s) 1062
BciT130I CCWGG 2 cut(s) 754, 957
BciVI GTATCC 1 cut(s) 161
BclI TGATCA 1 cut(s) 1189
BcnI CCSGG 2 cut(s) 1010, 1011
BfaI CTAG 3 cut(s) 668, 998, 1250
BfmI CTRYAG 1 cut(s) 858
BfoI RGCGCY 1 cut(s) 334
BfuI GTATCC 1 cut(s) 161
BglI GCCNNNNNGGC 1 cut(s) 363
BisI GCNGC 7 cut(s) 364, 388, 459, 798, 855, 858, 1094
BlsI GCNGC 7 cut(s) 365, 389, 460, 799, 856, 859, 1095
BmcAI AGTACT 1 cut(s) 134
Bme1390I CCNGG 4 cut(s) 754, 957, 1010, 1011
BmeT110I CYCGRG 1 cut(s) 1009
BmgT120I GGNCC 1 cut(s) 1007
BmiI GGNNCC 1 cut(s) 332
BmrFI CCNGG 4 cut(s) 754, 957, 1010, 1011
BmrI ACTGGG 2 cut(s) 96, 145
BmsI GCATC 3 cut(s) 594, 1115, 1225
BmuI ACTGGG 2 cut(s) 96, 145
BpuMI CCSGG 2 cut(s) 1010, 1011
Bsa29I ATCGAT 1 cut(s) 1181
BsaHI GRCGYC 1 cut(s) 331
BsaJI CCNNGG 3 cut(s) 358, 676, 1009
BsaXI ACNNNNNCTCC 2 cut(s) 327, 357
Bsc4I CCNNNNNNNGG 5 cut(s) 327, 703, 721, 1024, 1268
Bse118I RCCGGY 1 cut(s) 428
Bse1I ACTGG 2 cut(s) 102, 140
Bse21I CCTNAGG 1 cut(s) 1211
Bse3DI GCAATG 4 cut(s) 116, 373, 658, 1043
BseBI CCWGG 2 cut(s) 754, 957
BseCI ATCGAT 1 cut(s) 1181
BseDI CCNNGG 3 cut(s) 358, 676, 1009
BseGI GGATG 5 cut(s) 585, 715, 787, 907, 1273
BseLI CCNNNNNNNGG 5 cut(s) 327, 703, 721, 1024, 1268
BseMI GCAATG 4 cut(s) 116, 373, 658, 1043
BseMII CTCAG 3 cut(s) 724, 746, 1234
BseNI ACTGG 2 cut(s) 102, 140
BseRI GAGGAG 1 cut(s) 67
BseXI GCAGC 5 cut(s) 445, 809, 841, 844, 1105
BsgI GTGCAG 1 cut(s) 816
Bsh1236I CGCG 2 cut(s) 355, 390
BshFI GGCC 3 cut(s) 845, 970, 1008
BshNI GGYRCC 1 cut(s) 330
BshVI ATCGAT 1 cut(s) 1181
BsiHKAI GWGCWC 1 cut(s) 744
BsiHKCI CYCGRG 1 cut(s) 1009
BsiSI CCGG 4 cut(s) 328, 429, 613, 1010
BslFI GGGAC 1 cut(s) 1065
BslI CCNNNNNNNGG 5 cut(s) 327, 703, 721, 1024, 1268
BsmFI GGGAC 1 cut(s) 1065
BsmI GAATGC 2 cut(s) 812, 1210
BsnI GGCC 3 cut(s) 845, 970, 1008
BsoBI CYCGRG 1 cut(s) 1009
Bsp1286I GDGCHC 1 cut(s) 744
Bsp143I GATC 3 cut(s) 95, 381, 1189
Bsp19I CCATGG 2 cut(s) 358, 676
BspACI CCGC 7 cut(s) 107, 303, 363, 385, 388, 1087, 1243
BspANI GGCC 3 cut(s) 845, 970, 1008
BspCNI CTCAG 3 cut(s) 723, 745, 1233
BspDI ATCGAT 1 cut(s) 1181
BspFNI CGCG 2 cut(s) 355, 390
BspLI GGNNCC 1 cut(s) 332
BspMAI CTGCAG 1 cut(s) 862
BspPI GGATC 2 cut(s) 90, 376
BspT107I GGYRCC 1 cut(s) 330
BsrDI GCAATG 4 cut(s) 116, 373, 658, 1043
BsrFI RCCGGY 1 cut(s) 428
BsrI ACTGG 2 cut(s) 102, 140
BssAI RCCGGY 1 cut(s) 428
BssECI CCNNGG 3 cut(s) 358, 676, 1009
BssMI GATC 3 cut(s) 95, 381, 1189
BssNI GRCGYC 1 cut(s) 331
BssT1I CCWWGG 2 cut(s) 358, 676
Bst2UI CCWGG 2 cut(s) 754, 957
Bst4CI ACNGT 4 cut(s) 449, 514, 534, 872
Bst6I CTCTTC 2 cut(s) 123, 293
BstACI GRCGYC 1 cut(s) 331
BstAPI GCANNNNNTGC 2 cut(s) 1099, 1205
BstC8I GCNNGC 4 cut(s) 50, 847, 1104, 1277
BstDEI CTNAG 4 cut(s) 710, 732, 1211, 1220
BstDSI CCRYGG 2 cut(s) 358, 676
BstENI CCTNNNNNAGG 1 cut(s) 1022
BstF5I GGATG 5 cut(s) 585, 715, 787, 907, 1273
BstFNI CGCG 2 cut(s) 355, 390
BstH2I RGCGCY 1 cut(s) 334
BstHHI GCGC 3 cut(s) 333, 357, 463
BstKTI GATC 3 cut(s) 98, 384, 1192
BstMBI GATC 3 cut(s) 95, 381, 1189
BstNI CCWGG 2 cut(s) 754, 957
BstNSI RCATGY 2 cut(s) 809, 1279
BstSCI CCNGG 4 cut(s) 752, 955, 1008, 1009
BstSFI CTRYAG 1 cut(s) 858
BstUI CGCG 2 cut(s) 355, 390
BstV1I GCAGC 5 cut(s) 445, 809, 841, 844, 1105
BstX2I RGATCY 1 cut(s) 95
BstYI RGATCY 1 cut(s) 95
Bsu15I ATCGAT 1 cut(s) 1181
Bsu36I CCTNAGG 1 cut(s) 1211
BsuI GTATCC 1 cut(s) 161
BsuRI GGCC 3 cut(s) 845, 970, 1008
BsuTUI ATCGAT 1 cut(s) 1181
BtgI CCRYGG 2 cut(s) 358, 676
BtsCI GGATG 5 cut(s) 585, 715, 787, 907, 1273
BtsI GCAGTG 3 cut(s) 495, 783, 846
BtsIMutI CAGTG 5 cut(s) 454, 495, 740, 783, 846
Cac8I GCNNGC 4 cut(s) 50, 847, 1104, 1277
CaiI CAGNNNCTG 1 cut(s) 1099
CfoI GCGC 3 cut(s) 333, 357, 463
Cfr10I RCCGGY 1 cut(s) 428
Cfr13I GGNCC 1 cut(s) 1007
Cfr9I CCCGGG 1 cut(s) 1009
ClaI ATCGAT 1 cut(s) 1181
CseI GACGC 1 cut(s) 1037
CsiI ACCWGGT 1 cut(s) 752
Csp6I GTAC 2 cut(s) 133, 1247
CviAII CATG 4 cut(s) 359, 677, 806, 1276
CviQI GTAC 2 cut(s) 133, 1247
DdeI CTNAG 4 cut(s) 710, 732, 1211, 1220
DinI GGCGCC 1 cut(s) 332
DpnI GATC 3 cut(s) 97, 383, 1191
DpnII GATC 3 cut(s) 95, 381, 1189
EaeI YGGCCR 1 cut(s) 843
Eam1104I CTCTTC 2 cut(s) 123, 293
EarI CTCTTC 2 cut(s) 123, 293
EciI GGCGGA 1 cut(s) 374
Eco130I CCWWGG 2 cut(s) 358, 676
Eco57I CTGAAG 1 cut(s) 896
Eco81I CCTNAGG 1 cut(s) 1211
Eco88I CYCGRG 1 cut(s) 1009
EcoNI CCTNNNNNAGG 1 cut(s) 1022
EcoRI GAATTC 2 cut(s) 568, 1128
EcoRII CCWGG 2 cut(s) 752, 955
EcoT14I CCWWGG 2 cut(s) 358, 676
EgeI GGCGCC 1 cut(s) 332
EheI GGCGCC 1 cut(s) 332
ErhI CCWWGG 2 cut(s) 358, 676
FaeI CATG 4 cut(s) 362, 680, 809, 1279
FalI AAGNNNNNCTT 2 cut(s) 630, 662
FaqI GGGAC 1 cut(s) 1065
FatI CATG 4 cut(s) 358, 676, 805, 1275
FauI CCCGC 2 cut(s) 310, 1236
FbaI TGATCA 1 cut(s) 1189
Fnu4HI GCNGC 7 cut(s) 364, 388, 459, 798, 855, 858, 1094
FokI GGATG 5 cut(s) 572, 702, 794, 914, 1280
Fsp4HI GCNGC 7 cut(s) 364, 388, 459, 798, 855, 858, 1094
FspBI CTAG 3 cut(s) 668, 998, 1250
FspI TGCGCA 1 cut(s) 462
GlaI GCGC 3 cut(s) 332, 356, 462
GluI GCNGC 7 cut(s) 364, 388, 459, 798, 855, 858, 1094
HaeII RGCGCY 1 cut(s) 334
HaeIII GGCC 3 cut(s) 845, 970, 1008
HapII CCGG 4 cut(s) 328, 429, 613, 1010
HgaI GACGC 1 cut(s) 1037
HhaI GCGC 3 cut(s) 333, 357, 463
Hin1I GRCGYC 1 cut(s) 331
Hin1II CATG 4 cut(s) 362, 680, 809, 1279
Hin6I GCGC 3 cut(s) 331, 355, 461
HinP1I GCGC 3 cut(s) 331, 355, 461
HinfI GANTC 4 cut(s) 392, 452, 830, 1014
HpaII CCGG 4 cut(s) 328, 429, 613, 1010
HphI GGTGA 2 cut(s) 310, 394
Hpy166II GTNNAC 2 cut(s) 500, 544
Hpy188I TCNGA 4 cut(s) 277, 770, 876, 1111
Hpy188III TCNNGA 6 cut(s) 93, 692, 834, 899, 976, 998
Hpy8I GTNNAC 2 cut(s) 500, 544
Hpy99I CGWCG 1 cut(s) 296
HpyAV CCTTC 2 cut(s) 307, 998
HpyCH4III ACNGT 4 cut(s) 449, 514, 534, 872
HpyCH4IV ACGT 1 cut(s) 36
HpyF3I CTNAG 4 cut(s) 710, 732, 1211, 1220
HpySE526I ACGT 1 cut(s) 36
Hsp92I GRCGYC 1 cut(s) 331
Hsp92II CATG 4 cut(s) 362, 680, 809, 1279
HspAI GCGC 3 cut(s) 331, 355, 461
KasI GGCGCC 1 cut(s) 330
Ksp22I TGATCA 1 cut(s) 1189
Kzo9I GATC 3 cut(s) 95, 381, 1189
LmnI GCTCC 2 cut(s) 440, 836
Lsp1109I GCAGC 5 cut(s) 445, 809, 841, 844, 1105
LweI GCATC 3 cut(s) 594, 1115, 1225
MabI ACCWGGT 1 cut(s) 752
MaeI CTAG 3 cut(s) 668, 998, 1250
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 2 cut(s) 916, 1256
MalI GATC 3 cut(s) 97, 383, 1191
MboI GATC 3 cut(s) 95, 381, 1189
MboII GAAGA 3 cut(s) 140, 280, 889
MfeI CAATTG 1 cut(s) 207
MflI RGATCY 1 cut(s) 95
MhlI GDGCHC 1 cut(s) 744
MlsI TGGCCA 1 cut(s) 845
MluCI AATT 8 cut(s) 207, 280, 478, 503, 568, 595, 687, 1128
MluNI TGGCCA 1 cut(s) 845
Mly113I GGCGCC 1 cut(s) 331
MlyI GAGTC 3 cut(s) 386, 461, 1023
MnlI CCTC 8 cut(s) 88, 158, 219, 434, 514, 620, 883, 994
Mox20I TGGCCA 1 cut(s) 845
MscI TGGCCA 1 cut(s) 845
MseI TTAA 3 cut(s) 30, 749, 1023
Msp20I TGGCCA 1 cut(s) 845
MspA1I CMGCKG 1 cut(s) 458
MspI CCGG 4 cut(s) 328, 429, 613, 1010
MspR9I CCNGG 4 cut(s) 754, 957, 1010, 1011
MunI CAATTG 1 cut(s) 207
Mva1269I GAATGC 2 cut(s) 812, 1210
MvaI CCWGG 2 cut(s) 754, 957
MvnI CGCG 2 cut(s) 355, 390
NarI GGCGCC 1 cut(s) 331
NciI CCSGG 2 cut(s) 1010, 1011
NcoI CCATGG 2 cut(s) 358, 676
NdeII GATC 3 cut(s) 95, 381, 1189
NlaIII CATG 4 cut(s) 362, 680, 809, 1279
NlaIV GGNNCC 1 cut(s) 332
NmeAIII GCCGAG 1 cut(s) 291
NsbI TGCGCA 1 cut(s) 462
NspI RCATGY 2 cut(s) 809, 1279
PaeI GCATGC 1 cut(s) 1279
PctI GAATGC 2 cut(s) 812, 1210
PfeI GAWTC 1 cut(s) 830
PflMI CCANNNNNTGG 1 cut(s) 1268
PkrI GCNGC 7 cut(s) 365, 389, 460, 799, 856, 859, 1095
PleI GAGTC 3 cut(s) 386, 460, 1022
PluTI GGCGCC 1 cut(s) 334
PpsI GAGTC 3 cut(s) 386, 460, 1022
Psp1406I AACGTT 1 cut(s) 36
Psp6I CCWGG 2 cut(s) 752, 955
PspGI CCWGG 2 cut(s) 752, 955
PspN4I GGNNCC 1 cut(s) 332
PspPI GGNCC 1 cut(s) 1007
PstI CTGCAG 1 cut(s) 862
PstNI CAGNNNCTG 1 cut(s) 1099
PsuI RGATCY 1 cut(s) 95
PvuII CAGCTG 1 cut(s) 458
RsaI GTAC 2 cut(s) 134, 1248
RsaNI GTAC 2 cut(s) 133, 1247
SaqAI TTAA 3 cut(s) 30, 749, 1023
SatI GCNGC 7 cut(s) 364, 388, 459, 798, 855, 858, 1094
Sau3AI GATC 3 cut(s) 95, 381, 1189
Sau96I GGNCC 1 cut(s) 1007
ScaI AGTACT 1 cut(s) 134
SchI GAGTC 3 cut(s) 386, 461, 1023
ScrFI CCNGG 4 cut(s) 754, 957, 1010, 1011
SduI GDGCHC 1 cut(s) 744
SexAI ACCWGGT 1 cut(s) 752
SfaNI GCATC 3 cut(s) 594, 1115, 1225
SfcI CTRYAG 1 cut(s) 858
SfoI GGCGCC 1 cut(s) 332
SgrAI CRCCGGYG 1 cut(s) 428
SmaI CCCGGG 1 cut(s) 1011
SphI GCATGC 1 cut(s) 1279
Sse9I AATT 8 cut(s) 207, 280, 478, 503, 568, 595, 687, 1128
SsiI CCGC 7 cut(s) 107, 303, 363, 385, 388, 1087, 1243
SspDI GGCGCC 1 cut(s) 330
SspI AATATT 1 cut(s) 157
SspMI CTAG 3 cut(s) 668, 998, 1250
StyD4I CCNGG 4 cut(s) 752, 955, 1008, 1009
StyI CCWWGG 2 cut(s) 358, 676
TaaI ACNGT 4 cut(s) 449, 514, 534, 872
TaiI ACGT 1 cut(s) 39
TaqI TCGA 4 cut(s) 92, 417, 922, 1181
TasI AATT 8 cut(s) 207, 280, 478, 503, 568, 595, 687, 1128
TatI WGTACW 1 cut(s) 132
TauI GCSGC 2 cut(s) 366, 390
TfiI GAWTC 1 cut(s) 830
Tru1I TTAA 3 cut(s) 30, 749, 1023
Tru9I TTAA 3 cut(s) 30, 749, 1023
TscAI CASTG 5 cut(s) 454, 495, 740, 783, 846
TseI GCWGC 5 cut(s) 458, 797, 854, 857, 1093
TspDTI ATGAA 2 cut(s) 141, 561
TspMI CCCGGG 1 cut(s) 1009
TspRI CASTG 5 cut(s) 454, 495, 740, 783, 846
Van91I CCANNNNNTGG 1 cut(s) 1268
XagI CCTNNNNNAGG 1 cut(s) 1022
XapI RAATTY 3 cut(s) 568, 687, 1128
XbaI TCTAGA 1 cut(s) 997
XceI RCATGY 2 cut(s) 809, 1279
XmaI CCCGGG 1 cut(s) 1009
XspI CTAG 3 cut(s) 668, 998, 1250
ZrmI AGTACT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.