MD03G1109900.v1.1

Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
9552225 .. 9556882
4658 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1109900.v1.1.491

Sequence Viewer

Length: 1203 bp
ATGGCGGCATCTTCGGTTGCACGATCCGCCACAACCCCACTCCCGCGACACGTCGTATCGAAACCCTCTCACGCCGATCACCTCCCCAAAACGACTTTAAGTTTCGAATCTCGCTCCGGACGCCGTCGTATCGTCCTGGCCCTGGCCTCTGTTCGGTCAGACGACAACACCGGAAAAATCGACGGCGGCGGTCACAGAAATCTGGTTGGAGGTGCTAGCGAATTAAAGAGCGCGTTGGAGGACTTCCCCTATGACGTAGTGTCGAAAGACCTCCGCGCTCTGCCGAGACCTTTGTCTTCGACCCACCTCTCCAATCCGGTCTCTGATGGCTCCCGCCTTCGCGTTGCGTATCAGGGGGTTCGTGGAGCATACAGTGAATCAGCTGCGGAGAAAGCGTATCCAAATTGTGAAGCAGTGCCTTGTGAACAATTCGATACTGCTTTTGAGGCTGTTGAACGCTGGCTTGTGGACAGAGCAGTCTTACCAATTGAGAATTCATTAGGTGGAAGCATCCACAGAAACTACGATCTTTTACTCAGGCACAGCTTGCATATAGTAGGGGAAGTGAAACTTGCTGTTCGGCATTGCTTACTGGCCAACCATGGTGTTGAAATTGAAGACCTGAAAAGGGTTCTTAGCCATCCACAGGCTCTTGCTCAGTGTGAGAACACGTTAACAAAGTTGGGATTGGTCAGAGAAGCAATGGATGATACTGCTGGTGCAGCAAAGCATGTTGCTTTCCACAAATTGAAAGATACAGGAGCTGTTGCCAGCTCTACTGCTGCAGTCATATATGGTCTGCAAATACTTGCGCAGGATATTCAGGATGATTCTGACAATGTTACTCGGTTCCTAATGCTTGCAAGAGAACCAATTATTCCTGGCACAGATAAGCCATTCAAGACAAGTATAGTCTTCTCCCTAGAGGAAGGTCCTGGGGTCCTTTTCAAGGCACTTGCTGTTTTTGCTTTGCGTCAAATCAATCTTACGAAGATTGAAAGCCGTCCTTTGCGTATGCAGCCCCTGCGAGCATCTGATGATAGTAATGGTGGATTATCAAAATACTTTGACTATCTTTTTTATGTGGATTTTGAAGCATCAATGGCTGATCAGAGTGCACAAAATGCCCTTCGGCATCTGAAGGAGTTTGCCACATTCTTGCGGGTGCTAGGGAGTTACCCAATGGATACAAGCATGACATGA

Protein Analysis

401

Amino Acids

43.75

Weight (kDa)

6.93

Isoelectric Point (pI)

43.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDT PF00800 115 - 290 3.6e-60 Prephenate dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 476
Acc16I TGCGCA 1 cut(s) 813
AccII CGCG 4 cut(s) 46, 233, 276, 342
AccIII TCCGGA 1 cut(s) 116
AciI CCGC 9 cut(s) 5, 27, 44, 186, 189, 274, 334, 386, 1162
AclWI GGATC 1 cut(s) 18
AcoI YGGCCR 1 cut(s) 594
AcsI RAATTY 1 cut(s) 493
AcuI CTGAAG 1 cut(s) 1160
AcyI GRCGYC 1 cut(s) 121
AfiI CCNNNNNNNGG 5 cut(s) 142, 153, 628, 646, 949
AflIII ACRYGT 2 cut(s) 49, 669
AgsI TTSAA 8 cut(s) 455, 611, 617, 751, 901, 949, 998, 1094
AhdI GACNNNNNGTC 1 cut(s) 259
AjiI CACGTC 1 cut(s) 52
AjnI CCWGG 4 cut(s) 135, 141, 880, 934
AjuI GAANNNNNNNTTGG 2 cut(s) 478, 510
AluBI AGCT 4 cut(s) 383, 546, 764, 774
AluI AGCT 4 cut(s) 383, 546, 764, 774
Alw21I GWGCWC 1 cut(s) 1120
Alw26I GTCTC 2 cut(s) 280, 325
Alw44I GTGCAC 1 cut(s) 1116
AlwI GGATC 1 cut(s) 18
AlwNI CAGNNNCTG 2 cut(s) 764, 1024
Aor13HI TCCGGA 1 cut(s) 116
AoxI GGCC 3 cut(s) 138, 144, 594
ApaLI GTGCAC 1 cut(s) 1116
ApeKI GCWGC 4 cut(s) 383, 722, 782, 1018
ApoI RAATTY 1 cut(s) 493
AspLEI GCGC 3 cut(s) 233, 278, 814
AspS9I GGNCC 3 cut(s) 139, 932, 940
AsuHPI GGTGA 1 cut(s) 71
AsuII TTCGAA 1 cut(s) 105
AsuNHI GCTAGC 1 cut(s) 215
AvaII GGWCC 2 cut(s) 932, 940
BaeGI GKGCMC 1 cut(s) 1120
BalI TGGCCA 1 cut(s) 596
BbsI GAAGAC 3 cut(s) 288, 624, 907
Bbv12I GWGCWC 1 cut(s) 1120
BbvI GCAGC 4 cut(s) 370, 734, 769, 1030
BccI CCATC 2 cut(s) 320, 648
BceAI ACGGC 3 cut(s) 108, 199, 987
BciT130I CCWGG 4 cut(s) 137, 143, 882, 936
BciVI GTATCC 2 cut(s) 408, 1180
BclI TGATCA 1 cut(s) 1108
BcoDI GTCTC 2 cut(s) 280, 325
BfaI CTAG 3 cut(s) 216, 923, 1169
BfmI CTRYAG 1 cut(s) 783
BfuI GTATCC 2 cut(s) 408, 1180
BisI GCNGC 6 cut(s) 6, 187, 384, 723, 783, 1019
BlsI GCNGC 6 cut(s) 7, 188, 385, 724, 784, 1020
Bme1390I CCNGG 4 cut(s) 137, 143, 882, 936
Bme18I GGWCC 2 cut(s) 932, 940
BmeRI GACNNNNNGTC 1 cut(s) 259
BmgBI CACGTC 1 cut(s) 52
BmgT120I GGNCC 3 cut(s) 139, 932, 940
BmiI GGNNCC 3 cut(s) 331, 851, 941
BmrFI CCNGG 4 cut(s) 137, 143, 882, 936
BmsI GCATC 5 cut(s) 17, 519, 1040, 1106, 1144
BmtI GCTAGC 1 cut(s) 219
BoxI GACNNNNGTC 1 cut(s) 292
BpiI GAAGAC 3 cut(s) 288, 624, 907
Bpu14I TTCGAA 1 cut(s) 105
BsaHI GRCGYC 1 cut(s) 121
BsaI GGTCTC 2 cut(s) 280, 325
BsaJI CCNNGG 3 cut(s) 141, 601, 935
BsaWI WCCGGW 3 cut(s) 116, 170, 316
BsaXI ACNNNNNCTCC 2 cut(s) 380, 410
Bsc4I CCNNNNNNNGG 5 cut(s) 142, 153, 628, 646, 949
Bse1I ACTGG 1 cut(s) 597
Bse3DI GCAATG 2 cut(s) 583, 708
BseAI TCCGGA 1 cut(s) 116
BseBI CCWGG 4 cut(s) 137, 143, 882, 936
BseDI CCNNGG 3 cut(s) 141, 601, 935
BseGI GGATG 4 cut(s) 510, 640, 712, 832
BseLI CCNNNNNNNGG 5 cut(s) 142, 153, 628, 646, 949
BseMI GCAATG 2 cut(s) 583, 708
BseMII CTCAG 2 cut(s) 550, 671
BseNI ACTGG 1 cut(s) 597
BseSI GKGCMC 1 cut(s) 1120
BseXI GCAGC 4 cut(s) 370, 734, 769, 1030
BsgI GTGCAG 1 cut(s) 741
Bsh1236I CGCG 4 cut(s) 46, 233, 276, 342
BshFI GGCC 3 cut(s) 140, 146, 596
BsiHKAI GWGCWC 1 cut(s) 1120
BsiSI CCGG 3 cut(s) 117, 171, 317
BslI CCNNNNNNNGG 5 cut(s) 142, 153, 628, 646, 949
BsmAI GTCTC 2 cut(s) 280, 325
BsnI GGCC 3 cut(s) 140, 146, 596
Bso31I GGTCTC 2 cut(s) 280, 325
Bsp119I TTCGAA 1 cut(s) 105
Bsp1286I GDGCHC 1 cut(s) 1120
Bsp13I TCCGGA 1 cut(s) 116
Bsp143I GATC 4 cut(s) 23, 76, 526, 1108
Bsp19I CCATGG 1 cut(s) 601
BspACI CCGC 9 cut(s) 5, 27, 44, 186, 189, 274, 334, 386, 1162
BspANI GGCC 3 cut(s) 140, 146, 596
BspCNI CTCAG 2 cut(s) 549, 670
BspEI TCCGGA 1 cut(s) 116
BspFNI CGCG 4 cut(s) 46, 233, 276, 342
BspLI GGNNCC 3 cut(s) 331, 851, 941
BspMAI CTGCAG 1 cut(s) 787
BspOI GCTAGC 1 cut(s) 219
BspPI GGATC 1 cut(s) 18
BspT104I TTCGAA 1 cut(s) 105
BspTNI GGTCTC 2 cut(s) 280, 325
BsrDI GCAATG 2 cut(s) 583, 708
BsrI ACTGG 1 cut(s) 597
BssECI CCNNGG 3 cut(s) 141, 601, 935
BssMI GATC 4 cut(s) 23, 76, 526, 1108
BssNI GRCGYC 1 cut(s) 121
BssT1I CCWWGG 1 cut(s) 601
Bst2UI CCWGG 4 cut(s) 137, 143, 882, 936
Bst4CI ACNGT 1 cut(s) 374
BstACI GRCGYC 1 cut(s) 121
BstAPI GCANNNNNTGC 3 cut(s) 547, 1024, 1124
BstBI TTCGAA 1 cut(s) 105
BstC8I GCNNGC 6 cut(s) 217, 461, 548, 772, 861, 1029
BstDEI CTNAG 3 cut(s) 536, 635, 657
BstDSI CCRYGG 1 cut(s) 601
BstENI CCTNNNNNAGG 1 cut(s) 947
BstF5I GGATG 4 cut(s) 510, 640, 712, 832
BstFNI CGCG 4 cut(s) 46, 233, 276, 342
BstHHI GCGC 3 cut(s) 233, 278, 814
BstKTI GATC 4 cut(s) 26, 79, 529, 1111
BstMAI GTCTC 2 cut(s) 280, 325
BstMBI GATC 4 cut(s) 23, 76, 526, 1108
BstNI CCWGG 4 cut(s) 137, 143, 882, 936
BstNSI RCATGY 1 cut(s) 734
BstPAI GACNNNNGTC 1 cut(s) 292
BstSCI CCNGG 4 cut(s) 135, 141, 880, 934
BstSFI CTRYAG 1 cut(s) 783
BstSLI GKGCMC 1 cut(s) 1120
BstUI CGCG 4 cut(s) 46, 233, 276, 342
BstV1I GCAGC 4 cut(s) 370, 734, 769, 1030
BstV2I GAAGAC 3 cut(s) 288, 624, 907
BsuI GTATCC 2 cut(s) 408, 1180
BsuRI GGCC 3 cut(s) 140, 146, 596
BtgI CCRYGG 1 cut(s) 601
BtrI CACGTC 1 cut(s) 52
BtsCI GGATG 4 cut(s) 510, 640, 712, 832
BtsI GCAGTG 1 cut(s) 420
BtsIMutI CAGTG 3 cut(s) 379, 420, 665
Cac8I GCNNGC 6 cut(s) 217, 461, 548, 772, 861, 1029
CaiI CAGNNNCTG 2 cut(s) 764, 1024
CfoI GCGC 3 cut(s) 233, 278, 814
Cfr13I GGNCC 3 cut(s) 139, 932, 940
CseI GACGC 2 cut(s) 129, 962
CviAII CATG 4 cut(s) 602, 731, 1195, 1200
DdeI CTNAG 3 cut(s) 536, 635, 657
DpnI GATC 4 cut(s) 25, 78, 528, 1110
DpnII GATC 4 cut(s) 23, 76, 526, 1108
DrdI GACNNNNNNGTC 1 cut(s) 476
DriI GACNNNNNGTC 1 cut(s) 259
DseDI GACNNNNNNGTC 1 cut(s) 476
EaeI YGGCCR 1 cut(s) 594
Eam1105I GACNNNNNGTC 1 cut(s) 259
EciI GGCGGA 1 cut(s) 16
Eco130I CCWWGG 1 cut(s) 601
Eco31I GGTCTC 2 cut(s) 280, 325
Eco47I GGWCC 2 cut(s) 932, 940
Eco57I CTGAAG 1 cut(s) 1160
EcoNI CCTNNNNNAGG 1 cut(s) 947
EcoO109I RGGNCCY 2 cut(s) 932, 940
EcoRI GAATTC 1 cut(s) 493
EcoRII CCWGG 4 cut(s) 135, 141, 880, 934
EcoT14I CCWWGG 1 cut(s) 601
ErhI CCWWGG 1 cut(s) 601
FaeI CATG 4 cut(s) 605, 734, 1198, 1203
FalI AAGNNNNNCTT 4 cut(s) 555, 587, 991, 1023
FatI CATG 4 cut(s) 601, 730, 1194, 1199
FauI CCCGC 3 cut(s) 51, 341, 1155
FbaI TGATCA 1 cut(s) 1108
Fnu4HI GCNGC 6 cut(s) 6, 187, 384, 723, 783, 1019
FokI GGATG 4 cut(s) 497, 627, 719, 839
Fsp4HI GCNGC 6 cut(s) 6, 187, 384, 723, 783, 1019
FspBI CTAG 3 cut(s) 216, 923, 1169
FspI TGCGCA 1 cut(s) 813
GlaI GCGC 3 cut(s) 232, 277, 813
GluI GCNGC 6 cut(s) 6, 187, 384, 723, 783, 1019
HaeIII GGCC 3 cut(s) 140, 146, 596
HapII CCGG 3 cut(s) 117, 171, 317
HgaI GACGC 2 cut(s) 129, 962
HhaI GCGC 3 cut(s) 233, 278, 814
Hin1I GRCGYC 1 cut(s) 121
Hin1II CATG 4 cut(s) 605, 734, 1198, 1203
Hin6I GCGC 3 cut(s) 231, 276, 812
HinP1I GCGC 3 cut(s) 231, 276, 812
HincII GTYRAC 1 cut(s) 675
HindII GTYRAC 1 cut(s) 675
HinfI GANTC 3 cut(s) 107, 377, 830
HpaI GTTAAC 1 cut(s) 675
HpaII CCGG 3 cut(s) 117, 171, 317
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 4 cut(s) 425, 469, 675, 1118
Hpy188I TCNGA 7 cut(s) 160, 325, 695, 835, 1036, 1113, 1140
Hpy188III TCNNGA 3 cut(s) 117, 824, 901
Hpy8I GTNNAC 4 cut(s) 425, 469, 675, 1118
Hpy99I CGWCG 3 cut(s) 56, 129, 185
HpyAV CCTTC 4 cut(s) 347, 923, 1135, 1139
HpyCH4III ACNGT 1 cut(s) 374
HpyCH4IV ACGT 3 cut(s) 51, 255, 671
HpyCH4V TGCA 8 cut(s) 20, 550, 722, 785, 802, 863, 1018, 1118
HpyF3I CTNAG 3 cut(s) 536, 635, 657
HpySE526I ACGT 3 cut(s) 51, 255, 671
Hsp92I GRCGYC 1 cut(s) 121
Hsp92II CATG 4 cut(s) 605, 734, 1198, 1203
HspAI GCGC 3 cut(s) 231, 276, 812
Kpn2I TCCGGA 1 cut(s) 116
Ksp22I TGATCA 1 cut(s) 1108
KspAI GTTAAC 1 cut(s) 675
Kzo9I GATC 4 cut(s) 23, 76, 526, 1108
LmnI GCTCC 4 cut(s) 119, 335, 365, 761
Lsp1109I GCAGC 4 cut(s) 370, 734, 769, 1030
LweI GCATC 5 cut(s) 17, 519, 1040, 1106, 1144
MaeI CTAG 3 cut(s) 216, 923, 1169
MaeII ACGT 3 cut(s) 51, 255, 671
MaeIII GTNAC 3 cut(s) 191, 841, 1175
MalI GATC 4 cut(s) 25, 78, 528, 1110
MboI GATC 4 cut(s) 23, 76, 526, 1108
MboII GAAGA 5 cut(s) 3, 288, 629, 907, 1003
MfeI CAATTG 1 cut(s) 486
MhlI GDGCHC 1 cut(s) 1120
MlsI TGGCCA 1 cut(s) 596
MluCI AATT 8 cut(s) 221, 403, 428, 486, 493, 612, 746, 873
MluNI TGGCCA 1 cut(s) 596
MmeI TCCRAC 2 cut(s) 187, 216
MnlI CCTC 9 cut(s) 76, 92, 157, 203, 232, 281, 317, 439, 919
Mox20I TGGCCA 1 cut(s) 596
MroI TCCGGA 1 cut(s) 116
MscI TGGCCA 1 cut(s) 596
MseI TTAA 3 cut(s) 98, 224, 674
Msp20I TGGCCA 1 cut(s) 596
MspA1I CMGCKG 1 cut(s) 383
MspI CCGG 3 cut(s) 117, 171, 317
MspR9I CCNGG 4 cut(s) 137, 143, 882, 936
MunI CAATTG 1 cut(s) 486
MvaI CCWGG 4 cut(s) 137, 143, 882, 936
MvnI CGCG 4 cut(s) 46, 233, 276, 342
NcoI CCATGG 1 cut(s) 601
NdeII GATC 4 cut(s) 23, 76, 526, 1108
NheI GCTAGC 1 cut(s) 215
NlaIII CATG 4 cut(s) 605, 734, 1198, 1203
NlaIV GGNNCC 3 cut(s) 331, 851, 941
NmeAIII GCCGAG 1 cut(s) 309
NmuCI GTSAC 1 cut(s) 191
NsbI TGCGCA 1 cut(s) 813
NspI RCATGY 1 cut(s) 734
NspV TTCGAA 1 cut(s) 105
PfeI GAWTC 3 cut(s) 107, 377, 830
PflFI GACNNNGTC 1 cut(s) 123
PkrI GCNGC 6 cut(s) 7, 188, 385, 724, 784, 1020
PpuMI RGGWCCY 2 cut(s) 932, 940
PshAI GACNNNNGTC 1 cut(s) 292
Psp5II RGGWCCY 2 cut(s) 932, 940
Psp6I CCWGG 4 cut(s) 135, 141, 880, 934
PspGI CCWGG 4 cut(s) 135, 141, 880, 934
PspN4I GGNNCC 3 cut(s) 331, 851, 941
PspPI GGNCC 3 cut(s) 139, 932, 940
PspPPI RGGWCCY 2 cut(s) 932, 940
PstI CTGCAG 1 cut(s) 787
PstNI CAGNNNCTG 2 cut(s) 764, 1024
PsyI GACNNNGTC 1 cut(s) 123
PvuII CAGCTG 1 cut(s) 383
SaqAI TTAA 3 cut(s) 98, 224, 674
SatI GCNGC 6 cut(s) 6, 187, 384, 723, 783, 1019
Sau3AI GATC 4 cut(s) 23, 76, 526, 1108
Sau96I GGNCC 3 cut(s) 139, 932, 940
ScrFI CCNGG 4 cut(s) 137, 143, 882, 936
SduI GDGCHC 1 cut(s) 1120
SfaNI GCATC 5 cut(s) 17, 519, 1040, 1106, 1144
SfcI CTRYAG 1 cut(s) 783
SfuI TTCGAA 1 cut(s) 105
SinI GGWCC 2 cut(s) 932, 940
Sse9I AATT 8 cut(s) 221, 403, 428, 486, 493, 612, 746, 873
SsiI CCGC 9 cut(s) 5, 27, 44, 186, 189, 274, 334, 386, 1162
SspMI CTAG 3 cut(s) 216, 923, 1169
StyD4I CCNGG 4 cut(s) 135, 141, 880, 934
StyI CCWWGG 1 cut(s) 601
TaaI ACNGT 1 cut(s) 374
TaiI ACGT 3 cut(s) 54, 258, 674
TaqI TCGA 6 cut(s) 59, 105, 180, 263, 299, 432
TaqII GACCGA 1 cut(s) 144
TasI AATT 8 cut(s) 221, 403, 428, 486, 493, 612, 746, 873
TauI GCSGC 2 cut(s) 8, 189
TfiI GAWTC 3 cut(s) 107, 377, 830
Tru1I TTAA 3 cut(s) 98, 224, 674
Tru9I TTAA 3 cut(s) 98, 224, 674
TscAI CASTG 3 cut(s) 379, 420, 665
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 4 cut(s) 383, 722, 782, 1018
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 1 cut(s) 486
TspRI CASTG 3 cut(s) 379, 420, 665
Tth111I GACNNNGTC 1 cut(s) 123
VneI GTGCAC 1 cut(s) 1116
VpaK11BI GGWCC 2 cut(s) 932, 940
XagI CCTNNNNNAGG 1 cut(s) 947
XapI RAATTY 1 cut(s) 493
XceI RCATGY 1 cut(s) 734
XspI CTAG 3 cut(s) 216, 923, 1169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.