Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008762

Physical Location & Seq

Genomic Coordinates Forward (+)

49830976 .. 49831868

Gene Structure 893 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003542

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGCACGGTGCAAAGCTGCGCGTGGCTTACCAGGGCTTTCCCCGCACTTACTCGGAGGCCGCGGCCGGTAAAGCCTACCCAAACTGCGAGGCCATTCCCTGCGATCAATTCGAAGTTGCTTTCCAGGCCGTGGAGCTTTGGATCGCCGACCGGGCCGTTTTGCCAATTGAAAACTCCCTCGGCGGCTCTATTCACCGGAATTACGATCTTCTCCTCCACCACAGGCTCCACATTGTCGGCGAGGTCCAGTTACTCGTCCACCACTGCCTCTTAGCACCCCCGGGGGTTCAAAAAGACTGCTTGGCCCAAGTCATCTCCCACTCTCAAGCCCTGGCCCATGCACAAGCCGCCGATATCTACGGCCTCAACATCCTCGCCGACGGTATCCAGGACGACTCGAGCAACGTGACCCGGTTTGTGATGCTTGCCCGGGAGCCCATAGTTCCCCGGACGGACCGGCCCTTCAAGACCACTATCGTCTTCGCTCACGACAAAGGGACGTCGGAGCTGTTCAAGGTGCTATCGGCGTTCGCCTTCAGGAACATCAGCTTGACCAAGATAGAGTCGCGGCCGCACCACAATCGTCCGATCAGGCTGGTGAACGACTCGAACGAAGGGAGCTTCGAGTACTTGTTCTACGTGGACTTCGAGGCGTCAATGGCAGAGGTTAGGGCTTATAATGCGTTGGAGGAGGTCCAAGAGTTCACGTCTTTCTTGAGGGTCCTTGGTAGCTACCCCAGGGATATGATCCCCTTGGTGTCCTTCGCGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006558 GO:0006570 GO:0006571 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009094 GO:0009095 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009637 GO:0009642 GO:0009645 GO:0009987 GO:0010244 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0017144 GO:0019438 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0047769 GO:0050896 GO:0071704 GO:0080167 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902221 GO:1902223

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

PDT

Protein Analysis

258

Amino Acids

28.75

Weight (kDa)

6.04

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDT	PF00800	8 - 114	2.2e-30	Prephenate dehydratase
PDT	PF00800	110 - 145	1.8e-07	Prephenate dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07630 AT3G07630 AT3G07630
fragaria_vesca	FvH4_3g33680 FvH4_3g33680 FvH4_3g33680
malus_domestica	MD03G1109900.v1.1 MD11G1123300.v1.1
prunus_persica	Prupe.6G092500_v2.0.a1 Prupe.6G092500_v2.0.a1 Prupe.6G092500_v2.0.a1
pyrus_communis	pycom11g10410
rosa_chinensis	RchiOBHm_Chr5g0061191
rosa_laevigata	RLG00000003542 RLG00000035438
rosa_multiflora	Rmu_sc0001366.1_g000019
rosa_roxburghii	Rroxscaffold_1G00019520
rosa_rugosa	Rorug05G0338500
rosa_samantha	Rh5AG399300 Rh5BG412500 Rh5CG437200 Rh5DG426800
rosa_wichuraiana	Rw5G037670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	678
AatII	GACGTC	1 cut(s)	503
AccB7I	CCANNNNNTGG	1 cut(s)	130
AccII	CGCG	4 cut(s)	21, 62, 568, 767
AciI	CCGC	8 cut(s)	43, 60, 62, 183, 348, 568, 572, 767
AclWI	GGATC	2 cut(s)	149, 742
AcoI	YGGCCR	2 cut(s)	63, 569
AcuI	CTGAAG	1 cut(s)	520
AcyI	GRCGYC	2 cut(s)	500, 653
AfaI	GTAC	1 cut(s)	629
AfiI	CCNNNNNNNGG	2 cut(s)	130, 768
AgsI	TTSAA	4 cut(s)	170, 290, 466, 514
AjiI	CACGTC	1 cut(s)	708
AjnI	CCWGG	5 cut(s)	30, 123, 330, 387, 737
AluBI	AGCT	6 cut(s)	16, 136, 508, 549, 621, 732
AluI	AGCT	6 cut(s)	16, 136, 508, 549, 621, 732
AlwI	GGATC	2 cut(s)	149, 742
Ama87I	CYCGRG	3 cut(s)	280, 397, 429
ApeKI	GCWGC	1 cut(s)	16
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	8 cut(s)	153, 244, 304, 334, 454, 459, 694, 721
AsuC2I	CCSGG	7 cut(s)	152, 281, 282, 412, 430, 431, 448
AsuHPI	GGTGA	2 cut(s)	185, 610
AsuII	TTCGAA	1 cut(s)	111
AvaI	CYCGRG	3 cut(s)	280, 397, 429
AvaII	GGWCC	4 cut(s)	244, 454, 694, 721
BanII	GRGCYC	1 cut(s)	438
BbsI	GAAGAC	1 cut(s)	472
BbvI	GCAGC	1 cut(s)	3
BceAI	ACGGC	3 cut(s)	113, 140, 376
BcgI	CGANNNNNNTGC	2 cut(s)	563, 597
BciT130I	CCWGG	5 cut(s)	32, 125, 332, 389, 739
BciVI	GTATCC	1 cut(s)	395
BcnI	CCSGG	7 cut(s)	152, 281, 282, 412, 430, 431, 448
BfuI	GTATCC	1 cut(s)	395
BglI	GCCNNNNNGGC	1 cut(s)	152
BisI	GCNGC	7 cut(s)	17, 60, 63, 184, 348, 569, 572
BlsI	GCNGC	7 cut(s)	18, 61, 64, 185, 349, 570, 573
BmcAI	AGTACT	1 cut(s)	629
Bme18I	GGWCC	4 cut(s)	244, 454, 694, 721
BmeT110I	CYCGRG	3 cut(s)	280, 397, 429
BmgBI	CACGTC	1 cut(s)	708
BmgT120I	GGNCC	8 cut(s)	153, 244, 304, 334, 454, 459, 694, 721
BmiI	GGNNCC	3 cut(s)	227, 435, 722
BmsI	GCATC	1 cut(s)	411
BpiI	GAAGAC	1 cut(s)	472
Bpu14I	TTCGAA	1 cut(s)	111
BpuEI	CTTGAG	2 cut(s)	309, 736
BpuMI	CCSGG	7 cut(s)	152, 281, 282, 412, 430, 431, 448
BsaAI	YACGTR	1 cut(s)	640
BsaHI	GRCGYC	2 cut(s)	500, 653
BsaWI	WCCGGW	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 768
Bse118I	RCCGGY	2 cut(s)	65, 456
Bse1I	ACTGG	1 cut(s)	247
BseBI	CCWGG	5 cut(s)	32, 125, 332, 389, 739
BseGI	GGATG	1 cut(s)	369
BseLI	CCNNNNNNNGG	2 cut(s)	130, 768
BseNI	ACTGG	1 cut(s)	247
BseRI	GAGGAG	2 cut(s)	203, 704
BseX3I	CGGCCG	2 cut(s)	63, 569
BseXI	GCAGC	1 cut(s)	3
Bsh1236I	CGCG	4 cut(s)	21, 62, 568, 767
Bsh1285I	CGRYCG	3 cut(s)	66, 151, 572
BsiEI	CGRYCG	3 cut(s)	66, 151, 572
BsiHKCI	CYCGRG	3 cut(s)	280, 397, 429
BsiSI	CCGG	8 cut(s)	66, 151, 196, 281, 412, 430, 448, 457
BslFI	GGGAC	1 cut(s)	511
BslI	CCNNNNNNNGG	2 cut(s)	130, 768
BsmFI	GGGAC	1 cut(s)	511
BsoBI	CYCGRG	3 cut(s)	280, 397, 429
Bsp119I	TTCGAA	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	438
Bsp143I	GATC	5 cut(s)	103, 141, 205, 588, 747
BspACI	CCGC	8 cut(s)	43, 60, 62, 183, 348, 568, 572, 767
BspFNI	CGCG	4 cut(s)	21, 62, 568, 767
BspLI	GGNNCC	3 cut(s)	227, 435, 722
BspPI	GGATC	2 cut(s)	149, 742
BspT104I	TTCGAA	1 cut(s)	111
BsrFI	RCCGGY	2 cut(s)	65, 456
BsrI	ACTGG	1 cut(s)	247
BssAI	RCCGGY	2 cut(s)	65, 456
BssMI	GATC	5 cut(s)	103, 141, 205, 588, 747
BssNI	GRCGYC	2 cut(s)	500, 653
BssT1I	CCWWGG	2 cut(s)	724, 753
Bst2UI	CCWGG	5 cut(s)	32, 125, 332, 389, 739
Bst4CI	ACNGT	2 cut(s)	8, 383
BstACI	GRCGYC	2 cut(s)	500, 653
BstBAI	YACGTR	1 cut(s)	640
BstBI	TTCGAA	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	426
BstDEI	CTNAG	1 cut(s)	271
BstDSI	CCRYGG	2 cut(s)	60, 129
BstF5I	GGATG	1 cut(s)	369
BstFNI	CGCG	4 cut(s)	21, 62, 568, 767
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	5 cut(s)	106, 144, 208, 591, 750
BstMBI	GATC	5 cut(s)	103, 141, 205, 588, 747
BstMCI	CGRYCG	3 cut(s)	66, 151, 572
BstMWI	GCNNNNNNNGC	7 cut(s)	42, 71, 125, 152, 347, 659, 680
BstNI	CCWGG	5 cut(s)	32, 125, 332, 389, 739
BstUI	CGCG	4 cut(s)	21, 62, 568, 767
BstV1I	GCAGC	1 cut(s)	3
BstV2I	GAAGAC	1 cut(s)	472
BstZI	CGGCCG	2 cut(s)	63, 569
BsuI	GTATCC	1 cut(s)	395
BtgI	CCRYGG	2 cut(s)	60, 129
BtrI	CACGTC	1 cut(s)	708
BtsCI	GGATG	1 cut(s)	369
BtsI	GCAGTG	1 cut(s)	262
BtsIMutI	CAGTG	1 cut(s)	262
Cac8I	GCNNGC	1 cut(s)	426
CciNI	GCGGCCGC	1 cut(s)	569
CfoI	GCGC	1 cut(s)	21
Cfr10I	RCCGGY	2 cut(s)	65, 456
Cfr13I	GGNCC	8 cut(s)	153, 244, 304, 334, 454, 459, 694, 721
Cfr42I	CCGCGG	1 cut(s)	63
Cfr9I	CCCGGG	2 cut(s)	280, 429
CpoI	CGGWCCG	1 cut(s)	454
CseI	GACGC	1 cut(s)	642
Csp6I	GTAC	1 cut(s)	628
CspI	CGGWCCG	1 cut(s)	454
CviAII	CATG	1 cut(s)	338
CviQI	GTAC	1 cut(s)	628
DdeI	CTNAG	1 cut(s)	271
DpnI	GATC	5 cut(s)	105, 143, 207, 590, 749
DpnII	GATC	5 cut(s)	103, 141, 205, 588, 747
EaeI	YGGCCR	2 cut(s)	63, 569
EagI	CGGCCG	2 cut(s)	63, 569
EclXI	CGGCCG	2 cut(s)	63, 569
Eco130I	CCWWGG	2 cut(s)	724, 753
Eco24I	GRGCYC	1 cut(s)	438
Eco32I	GATATC	1 cut(s)	355
Eco47I	GGWCC	4 cut(s)	244, 454, 694, 721
Eco52I	CGGCCG	2 cut(s)	63, 569
Eco57I	CTGAAG	1 cut(s)	520
Eco88I	CYCGRG	3 cut(s)	280, 397, 429
EcoO109I	RGGNCCY	1 cut(s)	721
EcoRII	CCWGG	5 cut(s)	30, 123, 330, 387, 737
EcoRV	GATATC	1 cut(s)	355
EcoT14I	CCWWGG	2 cut(s)	724, 753
EcoT38I	GRGCYC	1 cut(s)	438
ErhI	CCWWGG	2 cut(s)	724, 753
FaeI	CATG	1 cut(s)	341
FaiI	YATR	4 cut(s)	339, 440, 678, 746
FaqI	GGGAC	1 cut(s)	511
FatI	CATG	1 cut(s)	337
FauI	CCCGC	2 cut(s)	50, 760
Fnu4HI	GCNGC	7 cut(s)	17, 60, 63, 184, 348, 569, 572
FokI	GGATG	1 cut(s)	356
FriOI	GRGCYC	1 cut(s)	438
Fsp4HI	GCNGC	7 cut(s)	17, 60, 63, 184, 348, 569, 572
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	7 cut(s)	17, 60, 63, 184, 348, 569, 572
HapII	CCGG	8 cut(s)	66, 151, 196, 281, 412, 430, 448, 457
HgaI	GACGC	1 cut(s)	642
HhaI	GCGC	1 cut(s)	21
Hin1I	GRCGYC	2 cut(s)	500, 653
Hin1II	CATG	1 cut(s)	341
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HinfI	GANTC	3 cut(s)	395, 563, 605
HpaII	CCGG	8 cut(s)	66, 151, 196, 281, 412, 430, 448, 457
HphI	GGTGA	2 cut(s)	185, 610
Hpy166II	GTNNAC	4 cut(s)	259, 601, 643, 705
Hpy188I	TCNGA	3 cut(s)	55, 505, 588
Hpy188III	TCNNGA	4 cut(s)	466, 488, 538, 715
Hpy8I	GTNNAC	4 cut(s)	259, 601, 643, 705
Hpy99I	CGWCG	2 cut(s)	383, 505
HpyAV	CCTTC	4 cut(s)	472, 544, 608, 772
HpyCH4III	ACNGT	2 cut(s)	8, 383
HpyCH4IV	ACGT	4 cut(s)	405, 500, 639, 707
HpyCH4V	TGCA	3 cut(s)	4, 11, 341
HpyF10VI	GCNNNNNNNGC	7 cut(s)	42, 71, 125, 152, 347, 659, 680
HpyF3I	CTNAG	1 cut(s)	271
HpySE526I	ACGT	4 cut(s)	405, 500, 639, 707
Hsp92I	GRCGYC	2 cut(s)	500, 653
Hsp92II	CATG	1 cut(s)	341
HspAI	GCGC	1 cut(s)	19
KspI	CCGCGG	1 cut(s)	63
Kzo9I	GATC	5 cut(s)	103, 141, 205, 588, 747
LmnI	GCTCC	5 cut(s)	133, 231, 433, 505, 618
Lsp1109I	GCAGC	1 cut(s)	3
LweI	GCATC	1 cut(s)	411
MaeII	ACGT	4 cut(s)	405, 500, 639, 707
MaeIII	GTNAC	2 cut(s)	249, 406
MalI	GATC	5 cut(s)	105, 143, 207, 590, 749
MboI	GATC	5 cut(s)	103, 141, 205, 588, 747
MboII	GAAGA	2 cut(s)	200, 472
MfeI	CAATTG	1 cut(s)	165
MhlI	GDGCHC	1 cut(s)	438
MluCI	AATT	3 cut(s)	107, 165, 199
MlyI	GAGTC	3 cut(s)	389, 572, 599
MmeI	TCCRAC	2 cut(s)	483, 666
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	8 cut(s)	66, 151, 196, 281, 412, 430, 448, 457
MunI	CAATTG	1 cut(s)	165
MvaI	CCWGG	5 cut(s)	32, 125, 332, 389, 739
MvnI	CGCG	4 cut(s)	21, 62, 568, 767
MwoI	GCNNNNNNNGC	7 cut(s)	42, 71, 125, 152, 347, 659, 680
NciI	CCSGG	7 cut(s)	152, 281, 282, 412, 430, 431, 448
NdeII	GATC	5 cut(s)	103, 141, 205, 588, 747
NlaIII	CATG	1 cut(s)	341
NlaIV	GGNNCC	3 cut(s)	227, 435, 722
NmeAIII	GCCGAG	1 cut(s)	159
NmuCI	GTSAC	1 cut(s)	406
NotI	GCGGCCGC	1 cut(s)	569
NspV	TTCGAA	1 cut(s)	111
PaeR7I	CTCGAG	1 cut(s)	397
PasI	CCCWGGG	1 cut(s)	738
PcsI	WCGNNNNNNNCGW	2 cut(s)	609, 645
PflMI	CCANNNNNTGG	1 cut(s)	130
PfoI	TCCNGGA	1 cut(s)	387
PkrI	GCNGC	7 cut(s)	18, 61, 64, 185, 349, 570, 573
PleI	GAGTC	3 cut(s)	389, 571, 599
PpsI	GAGTC	3 cut(s)	389, 571, 599
Ppu21I	YACGTR	1 cut(s)	640
PpuMI	RGGWCCY	1 cut(s)	721
PsiI	TTATAA	1 cut(s)	678
Psp5II	RGGWCCY	1 cut(s)	721
Psp6I	CCWGG	5 cut(s)	30, 123, 330, 387, 737
PspGI	CCWGG	5 cut(s)	30, 123, 330, 387, 737
PspN4I	GGNNCC	3 cut(s)	227, 435, 722
PspPI	GGNCC	8 cut(s)	153, 244, 304, 334, 454, 459, 694, 721
PspPPI	RGGWCCY	1 cut(s)	721
PspXI	VCTCGAGB	1 cut(s)	397
RsaI	GTAC	1 cut(s)	629
RsaNI	GTAC	1 cut(s)	628
Rsr2I	CGGWCCG	1 cut(s)	454
RsrII	CGGWCCG	1 cut(s)	454
SacII	CCGCGG	1 cut(s)	63
SatI	GCNGC	7 cut(s)	17, 60, 63, 184, 348, 569, 572
Sau3AI	GATC	5 cut(s)	103, 141, 205, 588, 747
Sau96I	GGNCC	8 cut(s)	153, 244, 304, 334, 454, 459, 694, 721
ScaI	AGTACT	1 cut(s)	629
SchI	GAGTC	3 cut(s)	389, 572, 599
SduI	GDGCHC	1 cut(s)	438
SfaNI	GCATC	1 cut(s)	411
Sfr274I	CTCGAG	1 cut(s)	397
Sfr303I	CCGCGG	1 cut(s)	63
SfuI	TTCGAA	1 cut(s)	111
SgrBI	CCGCGG	1 cut(s)	63
SinI	GGWCC	4 cut(s)	244, 454, 694, 721
SlaI	CTCGAG	1 cut(s)	397
SmaI	CCCGGG	2 cut(s)	282, 431
SmlI	CTYRAG	3 cut(s)	324, 397, 715
SmoI	CTYRAG	3 cut(s)	324, 397, 715
Sse9I	AATT	3 cut(s)	107, 165, 199
SsiI	CCGC	8 cut(s)	43, 60, 62, 183, 348, 568, 572, 767
StyI	CCWWGG	2 cut(s)	724, 753
TaaI	ACNGT	2 cut(s)	8, 383
TaiI	ACGT	4 cut(s)	408, 503, 642, 710
TaqI	TCGA	5 cut(s)	111, 398, 608, 624, 648
TasI	AATT	3 cut(s)	107, 165, 199
TatI	WGTACW	1 cut(s)	627
TauI	GCSGC	6 cut(s)	62, 65, 186, 350, 571, 574
TscAI	CASTG	1 cut(s)	269
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	406
TspGWI	ACGGA	1 cut(s)	467
TspMI	CCCGGG	2 cut(s)	280, 429
TspRI	CASTG	1 cut(s)	269
Van91I	CCANNNNNTGG	1 cut(s)	130
VpaK11BI	GGWCC	4 cut(s)	244, 454, 694, 721
XhoI	CTCGAG	1 cut(s)	397
XmaI	CCCGGG	2 cut(s)	280, 429
ZraI	GACGTC	1 cut(s)	501
ZrmI	AGTACT	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.