Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008762

Physical Location & Seq

Genomic Coordinates Reverse (-)

41111198 .. 41118074

Gene Structure 6877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0338500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2418 bp

ATGGCGTTGACCGAACTCACCGAAGAGCAAATATATACTGCATCTCTTGAGCTTAGCTTCGTTTCAGAGATAAATGGGGGTTTCATCGTTTTTTCGTTGGTTGGTAAACAAGTACACCCTAAAGTGGTGGTGAAAGCCATTGAAGCGGGAGAGGATCAGTTTCTAGATGCAAGCTTGCCAAACCCAAATGGCATAGAGTTCGATAACCTGTTTCTAGACATGAATGGGATTATCCATCCCTGCTTTCATCCGGAAGAAGATGATGATGATGGTTATGGACTTGCACCGCCAAGAACTTATGAAGATGTCTTCAACAATATTTTCGAATACATTGATCGGCTTTTCAATATTGTTAGACCAAGGAAACTACTCTACATAGCCATTGATGGAGTTGCTCCAAGGGCTAAAATGAATCAACAGCGCGCCAGGCGTTTTAAGTCGGCAATGGACAAGAATCTTGCTGAGGCTGAAGAAGAGAAACTAAGACAGCAATTTGAAAAGGAAGGGGAAAAAATCCTACTAGAACAGGAGTCCGAAGTTTCTGATTCTAATATAATCACCCCTGGAACGGATTTCATGTACAAGTTATCCAAGGCTCTTCAAAGCTACATCAATCTGCGTTTAAGCCAAGATTCAGGCTGGAGGGACATCAAGGTAATACTTTCTGATGCCAATGTTCCTGGGGAAGGAGAACATAAAGTGATGTCGTTCATACGTCACCAGCGAACTGTTCCTTCTTATGATCCAAACACCCGCCATTGCTTGTATGGTCTGGATGCGGATCTTATAATGTTGTCTTTGGCAACACATGAAGTTCACCTTTCCATACTAAGAGAGAATTTACTAATCCAAAACCAGCAGCAACATGCAAACAGTCAATTGACAATTTCATCTGCAATATCAGACAAAAGAACAGCGCACATGATGAAAAAGCCTTATCAGTTTCTGCATGTTTGGATTTTGAGGGAATATCTGGAGCTTGACATGCAAATCAGTGATCCTCCTGAGAACTTTAAGTTTGATCTTGAGCGTATCATTGATGATTTCATCTTTATATGTTTCTTTGCGGGAAATGATTTTTTACCCCACATGCCAACATTGGAAATTCATGAGGGTGCAATTGATTTGCTGATGACAGTCTACAAGAAAGAATTCAAGAATATTGGTGGCTATTTGGTTGATATGATTCAGGTTCATGACAAGAAGTTGGGGTACATCAAACTATCTAGAGTTGAGAAATTTGTTCTCCTTATTGGAGCATTTGAAGAGAAAATATTCAAGAAAAGATCAGATATACGAGAACGTAAACTCAGACGTCTTTGCTATAACAATGATTGGATAGAGGAAGACATTGATGCTGGAAGTTCAAACTTTAATTTCGAGGCAATTGAAGGATCTGCAGTTGTTTCAGTGGATAATGTTTCATCTTCCAAAATAGTGGAAAACACAAATGAATTCAAGCAAAAATTGAAGGCCAGCATTAGAAGAAAATCTGATCTGTTTAGGAATGGTGATTTTGGCACTGACAAAGTACGATTGGGTGCTACAGGATTCAAAGAAAGATATTACAAATGCAAATTTTCTGCTGAAAGCCCGGGGGAGATTGAAAACAAAAGGAAGGAAGTAGTTAAAAGCTACACAGAAGGACTGCTCTGGGTTCTTTTATACTACTTTTCCGGCCCCCCATCGTGGAAATGGTTTTATCCTTTTCATTATGGACCATTTGCCTCTGATATGAAGGGCCTAAGTCAGGTCAAACCACAATTTCAGAAAGGTTCCCCATTTAAACCTATAGATACACTCATGGCTGTCCTGCCACCAAGAAGTGCTCATGCACTTCCTAAGGATTATAGGACACTTATGATGGAAGAGTGTTCCACAATCATTGATTTTTACCCTTCTGACTTCGAAATTGACATGGATGGGAAGAGATTTACGTGGCAGGGTATCTGCAAACTTCCCTTTATAGAAGAATCCCGTCTTCTACAGGAGACCAGAAAATTGGAAAAGGAACTAATGGCAGAAGAAATTGACAGGAATGCTGAGAAACTTGATCAGTTATTCATGCGAAGCACCCACGGTATGGCATCACAAATTGTTTCACTGTCTAATGGTGACAATCAGTCGATCAAGATTGACACCAATTTGAGCTTTGGAATCAGTGGTTTTATCCGGCAGCTTGATGAGAATGATGCCAAGGTCAAAGAAAGAGATGATAGCTCTGAAGAAGACTCTGTCTTATGTGCCCTCTATGAGCTTCCTAATACAAGTCTGCATATGCCTCGTTTACTTGATGGTGTACAACATCCTTCCAAGACAATCAATGAACATGAGCTTATGGAAACAGTTCTATGGCATGAATGTCAGGGAAATGTGACCACCCGCAGCATCCAGCAAGTACAGGCAAGGTTTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004664 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006558 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009094 GO:0009095 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0017144 GO:0019438 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0047769 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902221 GO:1902223

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

PDT

Protein Analysis

805

Amino Acids

92.88

Weight (kDa)

5.43

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_N	PF03159	39 - 280	1.4e-93	XRN 5'-3' exonuclease N-terminus
XRN_M	PF17846	339 - 777	7.9e-150	Xrn1 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07630 AT3G07630 AT3G07630
fragaria_vesca	FvH4_3g33680 FvH4_3g33680 FvH4_3g33680
malus_domestica	MD03G1109900.v1.1 MD11G1123300.v1.1
prunus_persica	Prupe.6G092500_v2.0.a1 Prupe.6G092500_v2.0.a1 Prupe.6G092500_v2.0.a1
pyrus_communis	pycom11g10410
rosa_chinensis	RchiOBHm_Chr5g0061191
rosa_laevigata	RLG00000003542 RLG00000035438
rosa_multiflora	Rmu_sc0001366.1_g000019
rosa_roxburghii	Rroxscaffold_1G00019520
rosa_rugosa	Rorug05G0338500
rosa_samantha	Rh5AG399300 Rh5BG412500 Rh5CG437200 Rh5DG426800
rosa_wichuraiana	Rw5G037670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	788
AatII	GACGTC	1 cut(s)	1318
AccB7I	CCANNNNNTGG	1 cut(s)	2083
AccI	GTMKAC	1 cut(s)	1140
AccII	CGCG	1 cut(s)	423
AccIII	TCCGGA	1 cut(s)	250
AciI	CCGC	6 cut(s)	146, 287, 754, 779, 1067, 2383
AclWI	GGATC	5 cut(s)	162, 737, 789, 992, 1402
AcsI	RAATTY	6 cut(s)	838, 1104, 1151, 1238, 1454, 1577
AcuI	CTGAAG	2 cut(s)	489, 2244
AcyI	GRCGYC	1 cut(s)	1315
AfaI	GTAC	6 cut(s)	114, 581, 1214, 1533, 2301, 2400
AfiI	CCNNNNNNNGG	6 cut(s)	124, 568, 686, 1689, 1750, 2083
AhdI	GACNNNNNGTC	1 cut(s)	2122
AjnI	CCWGG	3 cut(s)	425, 562, 679
Alw21I	GWGCWC	1 cut(s)	1831
Alw26I	GTCTC	1 cut(s)	1985
AlwI	GGATC	5 cut(s)	162, 737, 789, 992, 1402
AlwNI	CAGNNNCTG	1 cut(s)	946
Ama87I	CYCGRG	1 cut(s)	1594
Aor13HI	TCCGGA	1 cut(s)	250
AoxI	GGCC	3 cut(s)	1473, 1678, 1741
ApeKI	GCWGC	3 cut(s)	859, 2176, 2385
ApoI	RAATTY	6 cut(s)	838, 1104, 1151, 1238, 1454, 1577
Asp700I	GAANNNNTTC	3 cut(s)	1151, 1274, 2346
AspLEI	GCGC	3 cut(s)	423, 425, 919
AspS9I	GGNCC	3 cut(s)	1679, 1718, 1741
AsuC2I	CCSGG	2 cut(s)	1595, 1596
AsuHPI	GGTGA	7 cut(s)	10, 142, 550, 710, 809, 1523, 2126
AsuII	TTCGAA	2 cut(s)	324, 1908
AvaI	CYCGRG	1 cut(s)	1594
AvaII	GGWCC	1 cut(s)	1718
AxyI	CCTNAGG	1 cut(s)	1842
BaeGI	GKGCMC	1 cut(s)	2248
BarI	GAAGNNNNNNTAC	2 cut(s)	1196, 1228
BbsI	GAAGAC	4 cut(s)	301, 1353, 1973, 2235
Bbv12I	GWGCWC	1 cut(s)	1831
BbvCI	CCTCAGC	1 cut(s)	462
BbvI	GCAGC	3 cut(s)	871, 2188, 2397
BccI	CCATC	7 cut(s)	243, 263, 380, 1693, 1858, 1916, 2288
BcgI	CGANNNNNNTGC	4 cut(s)	181, 215, 2264, 2298
BciT130I	CCWGG	3 cut(s)	427, 564, 681
BclI	TGATCA	1 cut(s)	2053
BcnI	CCSGG	2 cut(s)	1595, 1596
BcoDI	GTCTC	1 cut(s)	1985
BfaI	CTAG	4 cut(s)	164, 215, 521, 1227
BfmI	CTRYAG	4 cut(s)	1398, 1545, 1791, 1985
BisI	GCNGC	3 cut(s)	860, 2177, 2386
BlpI	GCTNAGC	1 cut(s)	53
BlsI	GCNGC	3 cut(s)	861, 2178, 2387
Bme1390I	CCNGG	5 cut(s)	427, 564, 681, 1595, 1596
Bme18I	GGWCC	1 cut(s)	1718
BmeRI	GACNNNNNGTC	1 cut(s)	2122
BmeT110I	CYCGRG	1 cut(s)	1594
BmgT120I	GGNCC	3 cut(s)	1679, 1718, 1741
BmiI	GGNNCC	2 cut(s)	1681, 1777
BmrFI	CCNGG	5 cut(s)	427, 564, 681, 1595, 1596
BmsI	GCATC	8 cut(s)	50, 157, 658, 766, 1345, 2096, 2182, 2397
BpiI	GAAGAC	4 cut(s)	301, 1353, 1973, 2235
BpmI	CTGGAG	2 cut(s)	661, 995
Bpu10I	CCTNAGC	1 cut(s)	462
Bpu1102I	GCTNAGC	1 cut(s)	53
Bpu14I	TTCGAA	2 cut(s)	324, 1908
BpuEI	CTTGAG	2 cut(s)	68, 1046
BpuMI	CCSGG	2 cut(s)	1595, 1596
BsaAI	YACGTR	1 cut(s)	1938
BsaBI	GATNNNNATC	1 cut(s)	780
BsaHI	GRCGYC	1 cut(s)	1315
BsaI	GGTCTC	1 cut(s)	1985
BsaJI	CCNNGG	9 cut(s)	359, 398, 562, 591, 680, 1594, 1595, 2077, 2196
BsaWI	WCCGGW	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	6 cut(s)	124, 568, 686, 1689, 1750, 2083
Bse21I	CCTNAGG	1 cut(s)	1842
Bse3DI	GCAATG	2 cut(s)	450, 757
Bse8I	GATNNNNATC	1 cut(s)	780
BseAI	TCCGGA	1 cut(s)	250
BseBI	CCWGG	3 cut(s)	427, 564, 681
BseDI	CCNNGG	9 cut(s)	359, 398, 562, 591, 680, 1594, 1595, 2077, 2196
BseGI	GGATG	6 cut(s)	235, 247, 781, 1927, 2305, 2388
BseJI	GATNNNNATC	1 cut(s)	780
BseLI	CCNNNNNNNGG	6 cut(s)	124, 568, 686, 1689, 1750, 2083
BseMI	GCAATG	2 cut(s)	450, 757
BseMII	CTCAG	4 cut(s)	453, 996, 1324, 2034
BsePI	GCGCGC	1 cut(s)	421
BseSI	GKGCMC	1 cut(s)	2248
BseXI	GCAGC	3 cut(s)	871, 2188, 2397
Bsh1236I	CGCG	1 cut(s)	423
BshFI	GGCC	3 cut(s)	1475, 1680, 1743
BsiHKAI	GWGCWC	1 cut(s)	1831
BsiHKCI	CYCGRG	1 cut(s)	1594
BsiSI	CCGG	4 cut(s)	251, 1595, 1677, 2173
BslFI	GGGAC	1 cut(s)	659
BslI	CCNNNNNNNGG	6 cut(s)	124, 568, 686, 1689, 1750, 2083
BsmAI	GTCTC	1 cut(s)	1985
BsmFI	GGGAC	1 cut(s)	659
BsmI	GAATGC	1 cut(s)	2044
BsnI	GGCC	3 cut(s)	1475, 1680, 1743
Bso31I	GGTCTC	1 cut(s)	1985
BsoBI	CYCGRG	1 cut(s)	1594
Bsp119I	TTCGAA	2 cut(s)	324, 1908
Bsp1286I	GDGCHC	2 cut(s)	1831, 2248
Bsp13I	TCCGGA	1 cut(s)	250
Bsp1407I	TGTACA	2 cut(s)	579, 2299
Bsp1720I	GCTNAGC	1 cut(s)	53
BspACI	CCGC	6 cut(s)	146, 287, 754, 779, 1067, 2383
BspANI	GGCC	3 cut(s)	1475, 1680, 1743
BspCNI	CTCAG	4 cut(s)	454, 997, 1323, 2035
BspEI	TCCGGA	1 cut(s)	250
BspFNI	CGCG	1 cut(s)	423
BspHI	TCATGA	2 cut(s)	1108, 1195
BspLI	GGNNCC	2 cut(s)	1681, 1777
BspMAI	CTGCAG	1 cut(s)	1402
BspPI	GGATC	5 cut(s)	162, 737, 789, 992, 1402
BspQI	GCTCTTC	2 cut(s)	18, 603
BspT104I	TTCGAA	2 cut(s)	324, 1908
BspTNI	GGTCTC	1 cut(s)	1985
BsrDI	GCAATG	2 cut(s)	450, 757
BsrGI	TGTACA	2 cut(s)	579, 2299
BssECI	CCNNGG	9 cut(s)	359, 398, 562, 591, 680, 1594, 1595, 2077, 2196
BssHII	GCGCGC	1 cut(s)	421
BssNI	GRCGYC	1 cut(s)	1315
BssT1I	CCWWGG	4 cut(s)	359, 398, 591, 2196
Bst2UI	CCWGG	3 cut(s)	427, 564, 681
Bst4CI	ACNGT	6 cut(s)	730, 875, 1138, 2081, 2106, 2347
Bst6I	CTCTTC	6 cut(s)	18, 468, 603, 1260, 1863, 1922
BstACI	GRCGYC	1 cut(s)	1315
BstAUI	TGTACA	2 cut(s)	579, 2299
BstBAI	YACGTR	1 cut(s)	1938
BstBI	TTCGAA	2 cut(s)	324, 1908
BstC8I	GCNNGC	4 cut(s)	172, 176, 423, 1477
BstDEI	CTNAG	9 cut(s)	53, 462, 482, 830, 1005, 1310, 1745, 1842, 2043
BstDSI	CCRYGG	1 cut(s)	2077
BstENI	CCTNNNNNAGG	2 cut(s)	684, 1748
BstF5I	GGATG	6 cut(s)	235, 247, 781, 1927, 2305, 2388
BstFNI	CGCG	1 cut(s)	423
BstHHI	GCGC	3 cut(s)	423, 425, 919
BstMAI	GTCTC	1 cut(s)	1985
BstMWI	GCNNNNNNNGC	4 cut(s)	143, 401, 427, 985
BstNI	CCWGG	3 cut(s)	427, 564, 681
BstNSI	RCATGY	4 cut(s)	869, 953, 988, 1093
BstSCI	CCNGG	5 cut(s)	425, 562, 679, 1593, 1594
BstSFI	CTRYAG	4 cut(s)	1398, 1545, 1791, 1985
BstSLI	GKGCMC	1 cut(s)	2248
BstUI	CGCG	1 cut(s)	423
BstV1I	GCAGC	3 cut(s)	871, 2188, 2397
BstV2I	GAAGAC	4 cut(s)	301, 1353, 1973, 2235
BstX2I	RGATCY	2 cut(s)	781, 1394
BstXI	CCANNNNNNTGG	2 cut(s)	1438, 2002
BstYI	RGATCY	2 cut(s)	781, 1394
Bsu36I	CCTNAGG	1 cut(s)	1842
BsuRI	GGCC	3 cut(s)	1475, 1680, 1743
BtgI	CCRYGG	1 cut(s)	2077
BtsCI	GGATG	6 cut(s)	235, 247, 781, 1927, 2305, 2388
BtsIMutI	CAGTG	5 cut(s)	1000, 1416, 1521, 2102, 2167
Cac8I	GCNNGC	4 cut(s)	172, 176, 423, 1477
CaiI	CAGNNNCTG	1 cut(s)	946
CciI	TCATGA	2 cut(s)	1108, 1195
CfoI	GCGC	3 cut(s)	423, 425, 919
Cfr13I	GGNCC	3 cut(s)	1679, 1718, 1741
Cfr9I	CCCGGG	1 cut(s)	1594
Csp6I	GTAC	6 cut(s)	113, 580, 1213, 1532, 2300, 2399
CspCI	CAANNNNNGTGG	2 cut(s)	1867, 1902
CviQI	GTAC	6 cut(s)	113, 580, 1213, 1532, 2300, 2399
DdeI	CTNAG	9 cut(s)	53, 462, 482, 830, 1005, 1310, 1745, 1842, 2043
DraI	TTTAAA	1 cut(s)	1786
DriI	GACNNNNNGTC	1 cut(s)	2122
Eam1104I	CTCTTC	6 cut(s)	18, 468, 603, 1260, 1863, 1922
Eam1105I	GACNNNNNGTC	1 cut(s)	2122
EarI	CTCTTC	6 cut(s)	18, 468, 603, 1260, 1863, 1922
Eco130I	CCWWGG	4 cut(s)	359, 398, 591, 2196
Eco31I	GGTCTC	1 cut(s)	1985
Eco47I	GGWCC	1 cut(s)	1718
Eco57I	CTGAAG	2 cut(s)	489, 2244
Eco81I	CCTNAGG	1 cut(s)	1842
Eco88I	CYCGRG	1 cut(s)	1594
EcoNI	CCTNNNNNAGG	2 cut(s)	684, 1748
EcoO109I	RGGNCCY	1 cut(s)	1741
EcoRI	GAATTC	2 cut(s)	1151, 1454
EcoRII	CCWGG	3 cut(s)	425, 562, 679
EcoT14I	CCWWGG	4 cut(s)	359, 398, 591, 2196
ErhI	CCWWGG	4 cut(s)	359, 398, 591, 2196
FalI	AAGNNNNNCTT	2 cut(s)	804, 836
FaqI	GGGAC	1 cut(s)	659
FauI	CCCGC	4 cut(s)	139, 761, 1060, 2390
FauNDI	CATATG	1 cut(s)	2277
FbaI	TGATCA	1 cut(s)	2053
FblI	GTMKAC	1 cut(s)	1140
Fnu4HI	GCNGC	3 cut(s)	860, 2177, 2386
FokI	GGATG	6 cut(s)	222, 234, 788, 1934, 2292, 2375
Fsp4HI	GCNGC	3 cut(s)	860, 2177, 2386
FspBI	CTAG	4 cut(s)	164, 215, 521, 1227
GlaI	GCGC	3 cut(s)	422, 424, 918
GluI	GCNGC	3 cut(s)	860, 2177, 2386
GsuI	CTGGAG	2 cut(s)	661, 995
HaeIII	GGCC	3 cut(s)	1475, 1680, 1743
HapII	CCGG	4 cut(s)	251, 1595, 1677, 2173
HhaI	GCGC	3 cut(s)	423, 425, 919
Hin1I	GRCGYC	1 cut(s)	1315
Hin6I	GCGC	3 cut(s)	421, 423, 917
HinP1I	GCGC	3 cut(s)	421, 423, 917
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HindIII	AAGCTT	1 cut(s)	172
HpaII	CCGG	4 cut(s)	251, 1595, 1677, 2173
HphI	GGTGA	7 cut(s)	10, 142, 550, 710, 809, 1523, 2126
Hpy166II	GTNNAC	8 cut(s)	9, 107, 115, 817, 1141, 1307, 2288, 2300
Hpy8I	GTNNAC	8 cut(s)	9, 107, 115, 817, 1141, 1307, 2288, 2300
HpyCH4III	ACNGT	6 cut(s)	730, 875, 1138, 2081, 2106, 2347
HpyCH4IV	ACGT	4 cut(s)	715, 1303, 1315, 1937
HpyF10VI	GCNNNNNNNGC	4 cut(s)	143, 401, 427, 985
HpyF3I	CTNAG	9 cut(s)	53, 462, 482, 830, 1005, 1310, 1745, 1842, 2043
HpySE526I	ACGT	4 cut(s)	715, 1303, 1315, 1937
Hsp92I	GRCGYC	1 cut(s)	1315
HspAI	GCGC	3 cut(s)	421, 423, 917
Kpn2I	TCCGGA	1 cut(s)	250
Ksp22I	TGATCA	1 cut(s)	2053
LguI	GCTCTTC	2 cut(s)	18, 603
LmnI	GCTCC	3 cut(s)	400, 976, 1256
Lsp1109I	GCAGC	3 cut(s)	871, 2188, 2397
LweI	GCATC	8 cut(s)	50, 157, 658, 766, 1345, 2096, 2182, 2397
MaeI	CTAG	4 cut(s)	164, 215, 521, 1227
MaeII	ACGT	4 cut(s)	715, 1303, 1315, 1937
MaeIII	GTNAC	3 cut(s)	716, 2114, 2374
MfeI	CAATTG	3 cut(s)	878, 1119, 1386
MflI	RGATCY	2 cut(s)	781, 1394
MhlI	GDGCHC	2 cut(s)	1831, 2248
MlyI	GAGTC	2 cut(s)	539, 2225
MroI	TCCGGA	1 cut(s)	250
MroXI	GAANNNNTTC	3 cut(s)	1151, 1274, 2346
MseI	TTAA	6 cut(s)	435, 623, 1014, 1374, 1629, 1785
MslI	CAYNNNNRTG	1 cut(s)	1113
MspI	CCGG	4 cut(s)	251, 1595, 1677, 2173
MspR9I	CCNGG	5 cut(s)	427, 564, 681, 1595, 1596
MunI	CAATTG	3 cut(s)	878, 1119, 1386
Mva1269I	GAATGC	1 cut(s)	2044
MvaI	CCWGG	3 cut(s)	427, 564, 681
MvnI	CGCG	1 cut(s)	423
MwoI	GCNNNNNNNGC	4 cut(s)	143, 401, 427, 985
NciI	CCSGG	2 cut(s)	1595, 1596
NdeI	CATATG	1 cut(s)	2277
NlaIV	GGNNCC	2 cut(s)	1681, 1777
NmuCI	GTSAC	3 cut(s)	716, 2114, 2374
NspI	RCATGY	4 cut(s)	869, 953, 988, 1093
NspV	TTCGAA	2 cut(s)	324, 1908
PagI	TCATGA	2 cut(s)	1108, 1195
PauI	GCGCGC	1 cut(s)	421
PciSI	GCTCTTC	2 cut(s)	18, 603
PcsI	WCGNNNNNNNCGW	1 cut(s)	721
PctI	GAATGC	1 cut(s)	2044
PdmI	GAANNNNTTC	3 cut(s)	1151, 1274, 2346
PfeI	GAWTC	8 cut(s)	412, 454, 545, 632, 1186, 1551, 1973, 2157
PflFI	GACNNNGTC	1 cut(s)	2234
PflMI	CCANNNNNTGG	1 cut(s)	2083
PkrI	GCNGC	3 cut(s)	861, 2178, 2387
PleI	GAGTC	2 cut(s)	538, 2225
PpsI	GAGTC	2 cut(s)	538, 2225
Ppu21I	YACGTR	1 cut(s)	1938
PsiI	TTATAA	1 cut(s)	788
Psp6I	CCWGG	3 cut(s)	425, 562, 679
PspGI	CCWGG	3 cut(s)	425, 562, 679
PspN4I	GGNNCC	2 cut(s)	1681, 1777
PspPI	GGNCC	3 cut(s)	1679, 1718, 1741
PstI	CTGCAG	1 cut(s)	1402
PstNI	CAGNNNCTG	1 cut(s)	946
PsuI	RGATCY	2 cut(s)	781, 1394
PsyI	GACNNNGTC	1 cut(s)	2234
PteI	GCGCGC	1 cut(s)	421
RsaI	GTAC	6 cut(s)	114, 581, 1214, 1533, 2301, 2400
RsaNI	GTAC	6 cut(s)	113, 580, 1213, 1532, 2300, 2399
RseI	CAYNNNNRTG	1 cut(s)	1113
SapI	GCTCTTC	2 cut(s)	18, 603
SaqAI	TTAA	6 cut(s)	435, 623, 1014, 1374, 1629, 1785
SatI	GCNGC	3 cut(s)	860, 2177, 2386
Sau96I	GGNCC	3 cut(s)	1679, 1718, 1741
SchI	GAGTC	2 cut(s)	539, 2225
ScrFI	CCNGG	5 cut(s)	427, 564, 681, 1595, 1596
SduI	GDGCHC	2 cut(s)	1831, 2248
SfaNI	GCATC	8 cut(s)	50, 157, 658, 766, 1345, 2096, 2182, 2397
SfcI	CTRYAG	4 cut(s)	1398, 1545, 1791, 1985
SfuI	TTCGAA	2 cut(s)	324, 1908
SinI	GGWCC	1 cut(s)	1718
SmaI	CCCGGG	1 cut(s)	1596
SmiMI	CAYNNNNRTG	1 cut(s)	1113
SmlI	CTYRAG	2 cut(s)	47, 1025
SmoI	CTYRAG	2 cut(s)	47, 1025
SsiI	CCGC	6 cut(s)	146, 287, 754, 779, 1067, 2383
SspI	AATATT	4 cut(s)	319, 349, 1162, 1275
SspMI	CTAG	4 cut(s)	164, 215, 521, 1227
StyD4I	CCNGG	5 cut(s)	425, 562, 679, 1593, 1594
StyI	CCWWGG	4 cut(s)	359, 398, 591, 2196
TaaI	ACNGT	6 cut(s)	730, 875, 1138, 2081, 2106, 2347
TaiI	ACGT	4 cut(s)	718, 1306, 1318, 1940
TaqI	TCGA	5 cut(s)	201, 324, 1380, 1908, 2126
TaqII	GACCGA	1 cut(s)	26
TatI	WGTACW	4 cut(s)	112, 579, 2299, 2398
TfiI	GAWTC	8 cut(s)	412, 454, 545, 632, 1186, 1551, 1973, 2157
Tru1I	TTAA	6 cut(s)	435, 623, 1014, 1374, 1629, 1785
Tru9I	TTAA	6 cut(s)	435, 623, 1014, 1374, 1629, 1785
TscAI	CASTG	5 cut(s)	1000, 1416, 1528, 2109, 2167
TseFI	GTSAC	3 cut(s)	716, 2114, 2374
TseI	GCWGC	3 cut(s)	859, 2176, 2385
Tsp45I	GTSAC	3 cut(s)	716, 2114, 2374
TspGWI	ACGGA	1 cut(s)	584
TspMI	CCCGGG	1 cut(s)	1594
TspRI	CASTG	5 cut(s)	1000, 1416, 1528, 2109, 2167
Tth111I	GACNNNGTC	1 cut(s)	2234
Van91I	CCANNNNNTGG	1 cut(s)	2083
VpaK11BI	GGWCC	1 cut(s)	1718
XagI	CCTNNNNNAGG	2 cut(s)	684, 1748
XapI	RAATTY	6 cut(s)	838, 1104, 1151, 1238, 1454, 1577
XbaI	TCTAGA	3 cut(s)	163, 214, 1226
XceI	RCATGY	4 cut(s)	869, 953, 988, 1093
XcmI	CCANNNNNNNNNTGG	2 cut(s)	764, 1692
XmaI	CCCGGG	1 cut(s)	1594
XmiI	GTMKAC	1 cut(s)	1140
XmnI	GAANNNNTTC	3 cut(s)	1151, 1274, 2346
XspI	CTAG	4 cut(s)	164, 215, 521, 1227
ZraI	GACGTC	1 cut(s)	1316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.