RchiOBHm_Chr5g0061191

Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
66530683 .. 66536272
5590 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33758

Sequence Viewer

Length: 1173 bp
ATGGCGGCGACTTCCATTGCTCGATCCGCCGCGACTCATCTCTCACCACCTCTCCCATCGAAGTCCTCGCCGTCCGATCGCTTCCCTAGAACAACACTAAAGTTCTGCCCGAAACGGCGTCGTTGTGCCGTCGTCGTCGCTTCTCTTCACGGAGACGGAAACGGAAAAAGCCACCACCAGGTCGGCGGTGCTCTGGATTTGGAAGACTTGCCGTTCGACGACGCATCGAAAGACTTGCACACTCTTCCAAGACCTTTGTCTTCGACTTTCGCCTCCAATTCGGTTGCTGAGAGCTCTCGTCTTCGTGTTGCGTATCAGGGTGTTCAAGGAGCATACAGTGAGTCAGCTGCTCAAAAGGCATACCCAAATTGCGAAGCAGTGCCTTGCGAACAATTTGATACTGTATTTGAGGCTGTTGAACGGTGGCTTGTGGACAGAGCAGTTTTACCATTTGAGAATTCATTAGGTGGTAGCATCCACAGAAATTATGACCTTATACTCCGGCATAGATTGCATATAGTAGGGGAAGTGAAACTTGCAGTTCGACATTGCTTACTAGCTAACCATGGTCTTGAAATTCAAGACCTAAAAAGGGTTCTCAGCCATCCACAGGCTCTTGCTCAGTGTGAGCACACATTAACCAGGTTTGGATTAGTCAGAGAAGCAGTGGATGATACTGCTGGTGCAGCAAAGCATGTTGCATTCCACAAACTGAAAGATTCGGGAGCAGTGGCCAGCTCTGCTGCTGCAGGGATATACGGTCTGAAGATACTTGCAGAGGATATTCAGGATGATAGTGATAATGTTACTCGATTTTTAGTCCTCGCAAGAGAACCTATCATTCCTGGCACAGATAGGCCATTCAAGACGAGTATAGTTTTCTCTCTAGAGGAAGGCCCGGGAGTCCTTTTTAAGGCACTTGCTGTTTTTGCATTGCGTCAGATCAATCTTACAAAGATTGAGAGCCGTCCCTTGCGGAAGCAGCCCCTGCGAGCATCTGATGATAATAATGGTGGAATTCCAAAACCAAAATACTTTGACTATCTTTTCTATGTGGATTTTGAAACATCGATGGCTGATCATAATGCACAGAATGCCCTTAGGCATCTCAGGGAGTTTGCTACATTCTTGCGGGTACTAGGGAGTTACCCAATGGATGGAAGCATGCTATGA

Protein Analysis

390

Amino Acids

42.87

Weight (kDa)

8.17

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDT PF00800 103 - 278 5.7e-60 Prephenate dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1157
AccII CGCG 1 cut(s) 32
AciI CCGC 6 cut(s) 5, 27, 30, 186, 976, 1132
AclWI GGATC 1 cut(s) 18
AcoI YGGCCR 1 cut(s) 732
AcsI RAATTY 3 cut(s) 457, 576, 1017
AcuI CTGAAG 1 cut(s) 785
AcyI GRCGYC 1 cut(s) 118
AfaI GTAC 1 cut(s) 1137
AfiI CCNNNNNNNGG 5 cut(s) 178, 592, 610, 913, 1157
AgsI TTSAA 6 cut(s) 326, 419, 575, 581, 865, 1064
AjnI CCWGG 3 cut(s) 177, 641, 844
AluBI AGCT 4 cut(s) 294, 347, 560, 738
AluI AGCT 4 cut(s) 294, 347, 560, 738
Alw21I GWGCWC 3 cut(s) 193, 296, 633
Alw26I GTCTC 1 cut(s) 147
AlwI GGATC 1 cut(s) 18
AlwNI CAGNNNCTG 1 cut(s) 988
Ama87I CYCGRG 1 cut(s) 898
AoxI GGCC 3 cut(s) 732, 857, 895
ApeKI GCWGC 5 cut(s) 347, 686, 743, 746, 982
ApoI RAATTY 3 cut(s) 457, 576, 1017
ArsI GACNNNNNNTTYG 2 cut(s) 197, 229
AspS9I GGNCC 1 cut(s) 896
AsuC2I CCSGG 2 cut(s) 899, 900
AsuHPI GGTGA 1 cut(s) 36
AvaI CYCGRG 1 cut(s) 898
AxyI CCTNAGG 1 cut(s) 1100
BalI TGGCCA 1 cut(s) 734
BanII GRGCYC 1 cut(s) 296
BbsI GAAGAC 3 cut(s) 210, 252, 293
Bbv12I GWGCWC 3 cut(s) 193, 296, 633
BbvI GCAGC 5 cut(s) 334, 698, 730, 733, 994
BccI CCATC 4 cut(s) 64, 612, 1066, 1151
BceAI ACGGC 5 cut(s) 55, 113, 131, 196, 951
BcgI CGANNNNNNTGC 2 cut(s) 217, 251
BciT130I CCWGG 3 cut(s) 179, 643, 846
BclI TGATCA 1 cut(s) 1078
BcnI CCSGG 2 cut(s) 899, 900
BcoDI GTCTC 1 cut(s) 147
BfaI CTAG 4 cut(s) 87, 557, 887, 1139
BfmI CTRYAG 1 cut(s) 747
BisI GCNGC 7 cut(s) 6, 30, 348, 687, 744, 747, 983
BlsI GCNGC 7 cut(s) 7, 31, 349, 688, 745, 748, 984
Bme1390I CCNGG 5 cut(s) 179, 643, 846, 899, 900
BmeT110I CYCGRG 1 cut(s) 898
BmgT120I GGNCC 1 cut(s) 896
BmrFI CCNGG 5 cut(s) 179, 643, 846, 899, 900
BmsI GCATC 4 cut(s) 233, 483, 1004, 1114
BoxI GACNNNNGTC 1 cut(s) 256
BpiI GAAGAC 3 cut(s) 210, 252, 293
BpuMI CCSGG 2 cut(s) 899, 900
Bsa29I ATCGAT 1 cut(s) 1070
BsaHI GRCGYC 1 cut(s) 118
BsaJI CCNNGG 2 cut(s) 565, 898
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bsc4I CCNNNNNNNGG 5 cut(s) 178, 592, 610, 913, 1157
Bse21I CCTNAGG 1 cut(s) 1100
Bse3DI GCAATG 3 cut(s) 15, 547, 932
BseBI CCWGG 3 cut(s) 179, 643, 846
BseCI ATCGAT 1 cut(s) 1070
BseDI CCNNGG 2 cut(s) 565, 898
BseGI GGATG 5 cut(s) 474, 604, 676, 796, 1162
BseLI CCNNNNNNNGG 5 cut(s) 178, 592, 610, 913, 1157
BseMI GCAATG 3 cut(s) 15, 547, 932
BseMII CTCAG 4 cut(s) 279, 613, 635, 1123
BseXI GCAGC 5 cut(s) 334, 698, 730, 733, 994
BsgI GTGCAG 1 cut(s) 705
Bsh1236I CGCG 1 cut(s) 32
Bsh1285I CGRYCG 1 cut(s) 79
BshFI GGCC 3 cut(s) 734, 859, 897
BshVI ATCGAT 1 cut(s) 1070
BsiEI CGRYCG 1 cut(s) 79
BsiHKAI GWGCWC 3 cut(s) 193, 296, 633
BsiHKCI CYCGRG 1 cut(s) 898
BsiSI CCGG 2 cut(s) 502, 899
BslFI GGGAC 1 cut(s) 954
BslI CCNNNNNNNGG 5 cut(s) 178, 592, 610, 913, 1157
BsmAI GTCTC 1 cut(s) 147
BsmBI CGTCTC 1 cut(s) 147
BsmFI GGGAC 1 cut(s) 954
BsmI GAATGC 2 cut(s) 701, 1099
BsnI GGCC 3 cut(s) 734, 859, 897
BsoBI CYCGRG 1 cut(s) 898
Bsp1286I GDGCHC 3 cut(s) 193, 296, 633
Bsp143I GATC 4 cut(s) 23, 76, 942, 1078
Bsp19I CCATGG 1 cut(s) 565
BspACI CCGC 6 cut(s) 5, 27, 30, 186, 976, 1132
BspANI GGCC 3 cut(s) 734, 859, 897
BspCNI CTCAG 4 cut(s) 280, 612, 634, 1122
BspDI ATCGAT 1 cut(s) 1070
BspFNI CGCG 1 cut(s) 32
BspMAI CTGCAG 1 cut(s) 751
BspPI GGATC 1 cut(s) 18
BsrDI GCAATG 3 cut(s) 15, 547, 932
BssECI CCNNGG 2 cut(s) 565, 898
BssMI GATC 4 cut(s) 23, 76, 942, 1078
BssNI GRCGYC 1 cut(s) 118
BssT1I CCWWGG 1 cut(s) 565
Bst2UI CCWGG 3 cut(s) 179, 643, 846
Bst4CI ACNGT 4 cut(s) 338, 403, 423, 761
Bst6I CTCTTC 2 cut(s) 150, 249
BstACI GRCGYC 1 cut(s) 118
BstAPI GCANNNNNTGC 3 cut(s) 511, 988, 1094
BstC8I GCNNGC 3 cut(s) 736, 993, 1166
BstDEI CTNAG 5 cut(s) 288, 599, 621, 1100, 1109
BstDSI CCRYGG 1 cut(s) 565
BstENI CCTNNNNNAGG 1 cut(s) 911
BstF5I GGATG 5 cut(s) 474, 604, 676, 796, 1162
BstFNI CGCG 1 cut(s) 32
BstKTI GATC 4 cut(s) 26, 79, 945, 1081
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 4 cut(s) 23, 76, 942, 1078
BstMCI CGRYCG 1 cut(s) 79
BstMWI GCNNNNNNNGC 9 cut(s) 26, 356, 511, 686, 740, 929, 982, 988, 1094
BstNI CCWGG 3 cut(s) 179, 643, 846
BstNSI RCATGY 2 cut(s) 698, 1168
BstPAI GACNNNNGTC 1 cut(s) 256
BstSCI CCNGG 5 cut(s) 177, 641, 844, 897, 898
BstSFI CTRYAG 1 cut(s) 747
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 5 cut(s) 334, 698, 730, 733, 994
BstV2I GAAGAC 3 cut(s) 210, 252, 293
Bsu15I ATCGAT 1 cut(s) 1070
Bsu36I CCTNAGG 1 cut(s) 1100
BsuRI GGCC 3 cut(s) 734, 859, 897
BsuTUI ATCGAT 1 cut(s) 1070
BtgI CCRYGG 1 cut(s) 565
BtsCI GGATG 5 cut(s) 474, 604, 676, 796, 1162
BtsI GCAGTG 3 cut(s) 384, 672, 735
BtsIMutI CAGTG 5 cut(s) 343, 384, 629, 672, 735
Cac8I GCNNGC 3 cut(s) 736, 993, 1166
CaiI CAGNNNCTG 1 cut(s) 988
Cfr13I GGNCC 1 cut(s) 896
Cfr9I CCCGGG 1 cut(s) 898
ClaI ATCGAT 1 cut(s) 1070
CseI GACGC 3 cut(s) 107, 230, 926
CsiI ACCWGGT 2 cut(s) 177, 641
Csp6I GTAC 1 cut(s) 1136
CviAII CATG 3 cut(s) 566, 695, 1165
CviQI GTAC 1 cut(s) 1136
DdeI CTNAG 5 cut(s) 288, 599, 621, 1100, 1109
DpnI GATC 4 cut(s) 25, 78, 944, 1080
DpnII GATC 4 cut(s) 23, 76, 942, 1078
EaeI YGGCCR 1 cut(s) 732
Eam1104I CTCTTC 2 cut(s) 150, 249
EarI CTCTTC 2 cut(s) 150, 249
EciI GGCGGA 1 cut(s) 16
Ecl136II GAGCTC 1 cut(s) 294
Eco130I CCWWGG 1 cut(s) 565
Eco24I GRGCYC 1 cut(s) 296
Eco53kI GAGCTC 1 cut(s) 294
Eco57I CTGAAG 1 cut(s) 785
Eco81I CCTNAGG 1 cut(s) 1100
Eco88I CYCGRG 1 cut(s) 898
EcoICRI GAGCTC 1 cut(s) 294
EcoNI CCTNNNNNAGG 1 cut(s) 911
EcoRI GAATTC 2 cut(s) 457, 1017
EcoRII CCWGG 3 cut(s) 177, 641, 844
EcoT14I CCWWGG 1 cut(s) 565
EcoT38I GRGCYC 1 cut(s) 296
ErhI CCWWGG 1 cut(s) 565
Esp3I CGTCTC 1 cut(s) 147
FaeI CATG 3 cut(s) 569, 698, 1168
FalI AAGNNNNNCTT 2 cut(s) 519, 551
FaqI GGGAC 1 cut(s) 954
FatI CATG 3 cut(s) 565, 694, 1164
FauI CCCGC 1 cut(s) 1125
FbaI TGATCA 1 cut(s) 1078
Fnu4HI GCNGC 7 cut(s) 6, 30, 348, 687, 744, 747, 983
FokI GGATG 5 cut(s) 461, 591, 683, 803, 1169
FriOI GRGCYC 1 cut(s) 296
Fsp4HI GCNGC 7 cut(s) 6, 30, 348, 687, 744, 747, 983
FspBI CTAG 4 cut(s) 87, 557, 887, 1139
GluI GCNGC 7 cut(s) 6, 30, 348, 687, 744, 747, 983
HaeIII GGCC 3 cut(s) 734, 859, 897
HapII CCGG 2 cut(s) 502, 899
HgaI GACGC 3 cut(s) 107, 230, 926
Hin1I GRCGYC 1 cut(s) 118
Hin1II CATG 3 cut(s) 569, 698, 1168
HinfI GANTC 4 cut(s) 34, 341, 719, 903
HpaII CCGG 2 cut(s) 502, 899
HphI GGTGA 1 cut(s) 36
Hpy166II GTNNAC 1 cut(s) 433
Hpy188I TCNGA 5 cut(s) 76, 659, 765, 942, 1000
Hpy188III TCNNGA 7 cut(s) 194, 572, 581, 723, 788, 865, 887
Hpy8I GTNNAC 1 cut(s) 433
Hpy99I CGWCG 6 cut(s) 123, 134, 137, 140, 221, 224
HpyAV CCTTC 1 cut(s) 887
HpyCH4III ACNGT 4 cut(s) 338, 403, 423, 761
HpyCH4V TGCA 9 cut(s) 238, 514, 539, 686, 701, 749, 776, 932, 1088
HpyF10VI GCNNNNNNNGC 9 cut(s) 26, 356, 511, 686, 740, 929, 982, 988, 1094
HpyF3I CTNAG 5 cut(s) 288, 599, 621, 1100, 1109
Hsp92I GRCGYC 1 cut(s) 118
Hsp92II CATG 3 cut(s) 569, 698, 1168
Ksp22I TGATCA 1 cut(s) 1078
Kzo9I GATC 4 cut(s) 23, 76, 942, 1078
LmnI GCTCC 2 cut(s) 329, 725
Lsp1109I GCAGC 5 cut(s) 334, 698, 730, 733, 994
LweI GCATC 4 cut(s) 233, 483, 1004, 1114
MabI ACCWGGT 2 cut(s) 177, 641
MaeI CTAG 4 cut(s) 87, 557, 887, 1139
MaeIII GTNAC 2 cut(s) 805, 1145
MalI GATC 4 cut(s) 25, 78, 944, 1080
MboI GATC 4 cut(s) 23, 76, 942, 1078
MboII GAAGA 6 cut(s) 137, 215, 236, 252, 293, 778
MhlI GDGCHC 3 cut(s) 193, 296, 633
MlsI TGGCCA 1 cut(s) 734
MluCI AATT 7 cut(s) 277, 367, 392, 457, 484, 576, 1017
MluNI TGGCCA 1 cut(s) 734
MlyI GAGTC 3 cut(s) 28, 350, 912
MnlI CCTC 7 cut(s) 60, 76, 283, 403, 772, 833, 883
Mox20I TGGCCA 1 cut(s) 734
MscI TGGCCA 1 cut(s) 734
MseI TTAA 2 cut(s) 638, 912
Msp20I TGGCCA 1 cut(s) 734
MspA1I CMGCKG 1 cut(s) 347
MspI CCGG 2 cut(s) 502, 899
MspR9I CCNGG 5 cut(s) 179, 643, 846, 899, 900
Mva1269I GAATGC 2 cut(s) 701, 1099
MvaI CCWGG 3 cut(s) 179, 643, 846
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 9 cut(s) 26, 356, 511, 686, 740, 929, 982, 988, 1094
NciI CCSGG 2 cut(s) 899, 900
NcoI CCATGG 1 cut(s) 565
NdeII GATC 4 cut(s) 23, 76, 942, 1078
NlaIII CATG 3 cut(s) 569, 698, 1168
NspI RCATGY 2 cut(s) 698, 1168
PaeI GCATGC 1 cut(s) 1168
PctI GAATGC 2 cut(s) 701, 1099
PfeI GAWTC 1 cut(s) 719
PflMI CCANNNNNTGG 1 cut(s) 1157
PkrI GCNGC 7 cut(s) 7, 31, 349, 688, 745, 748, 984
Ple19I CGATCG 1 cut(s) 79
PleI GAGTC 3 cut(s) 28, 349, 911
PpsI GAGTC 3 cut(s) 28, 349, 911
PshAI GACNNNNGTC 1 cut(s) 256
Psp124BI GAGCTC 1 cut(s) 296
Psp6I CCWGG 3 cut(s) 177, 641, 844
PspGI CCWGG 3 cut(s) 177, 641, 844
PspPI GGNCC 1 cut(s) 896
PstI CTGCAG 1 cut(s) 751
PstNI CAGNNNCTG 1 cut(s) 988
PvuI CGATCG 1 cut(s) 79
PvuII CAGCTG 1 cut(s) 347
RsaI GTAC 1 cut(s) 1137
RsaNI GTAC 1 cut(s) 1136
SacI GAGCTC 1 cut(s) 296
SaqAI TTAA 2 cut(s) 638, 912
SatI GCNGC 7 cut(s) 6, 30, 348, 687, 744, 747, 983
Sau3AI GATC 4 cut(s) 23, 76, 942, 1078
Sau96I GGNCC 1 cut(s) 896
SchI GAGTC 3 cut(s) 28, 350, 912
ScrFI CCNGG 5 cut(s) 179, 643, 846, 899, 900
SduI GDGCHC 3 cut(s) 193, 296, 633
SexAI ACCWGGT 2 cut(s) 177, 641
SfaNI GCATC 4 cut(s) 233, 483, 1004, 1114
SfcI CTRYAG 1 cut(s) 747
SmaI CCCGGG 1 cut(s) 900
SphI GCATGC 1 cut(s) 1168
Sse9I AATT 7 cut(s) 277, 367, 392, 457, 484, 576, 1017
SsiI CCGC 6 cut(s) 5, 27, 30, 186, 976, 1132
SspMI CTAG 4 cut(s) 87, 557, 887, 1139
SstI GAGCTC 1 cut(s) 296
StyD4I CCNGG 5 cut(s) 177, 641, 844, 897, 898
StyI CCWWGG 1 cut(s) 565
TaaI ACNGT 4 cut(s) 338, 403, 423, 761
TaqI TCGA 8 cut(s) 22, 59, 216, 227, 263, 544, 811, 1070
TasI AATT 7 cut(s) 277, 367, 392, 457, 484, 576, 1017
TauI GCSGC 2 cut(s) 8, 32
TfiI GAWTC 1 cut(s) 719
Tru1I TTAA 2 cut(s) 638, 912
Tru9I TTAA 2 cut(s) 638, 912
TscAI CASTG 5 cut(s) 343, 384, 629, 672, 735
TseI GCWGC 5 cut(s) 347, 686, 743, 746, 982
TspDTI ATGAA 1 cut(s) 450
TspGWI ACGGA 3 cut(s) 165, 171, 177
TspMI CCCGGG 1 cut(s) 898
TspRI CASTG 5 cut(s) 343, 384, 629, 672, 735
Van91I CCANNNNNTGG 1 cut(s) 1157
XagI CCTNNNNNAGG 1 cut(s) 911
XapI RAATTY 3 cut(s) 457, 576, 1017
XbaI TCTAGA 1 cut(s) 886
XceI RCATGY 2 cut(s) 698, 1168
XmaI CCCGGG 1 cut(s) 898
XspI CTAG 4 cut(s) 87, 557, 887, 1139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.