Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0008762

Physical Location & Seq

Genomic Coordinates Forward (+)

68084086 .. 68089437

Gene Structure 5352 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG426800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCGGCGACTTCCATTGCTCGAACCGCCGCGACTCATCTCTCACCACCTCTCCCATCGAAACCCTCGCCGTCCGATCACTTCCCTAGAACAACACTAAAGTTCTGCCCGAAACGGCGTCGTTGTGCCATCGTCCTCGCTTCTCTTCACGGAGACGGAAACGGAAAAAGCCACCACCAGGTCGGCGGTGCTCTGGATTTGGAAGACTTGCCGTTCGACGACGCATCGAAAGACTTGCACACTCTTCCAAGACCTTTGTCTTCGACTTTCGCCTCCAATTCGGTTGCTGAGGGCTCTCGTCTTCGTGTTGCGTATCAGGGTGTTCAAGGAGCATACAGTGAGTCAGCTGCTCAAAAGGCATACCCAAATTGCGAAGCAGTGCCTTGCGAACAATTTGATACTGTATTTGAGGCTGTTGAACGGTGGCTTGTGGACAGAGCAGTTTTACCATTTGAGAATTCATTAGGTGGTAGCATCCACAGAAATTATGACCTTATACTGCGGCATAGATTGCATATAGTAGGGGAAGTGAAACTTGCAGTTCGACATTGCTTACTAGCTAACCATGGTCTTGAAATTCAAGACCTAAAAAGGGTTCTCAGCCATCCACAGGCTCTTGCTCAGTGTGAGCACACATTAACCAGGTTTGGATTAGTCAGAGAAGCAGTGGATGATACTGCTGGTGCAGCAAAGCATGTTGCATTCCACAAACTGAAAGATTCGGGAGCAGTGGCCAGCTCTGCTGCTGCAGGGATATACGGTCTGAAGATACTTGCAGAGGATATTCAGGATGATAGTGATAATGTTACTCGATTTTTAGTCCTCGCAAGAGAACCTATCATTCCTGGCACAGATAGGCCATTCAAGACGAGTATAGTTTTCTCTCTAGAGGAAGGCCCGGGAGTCCTTTTTAAGGCACTTGCTGTTTTTGCATTGCGTCAGATCAATCTTACAAAGATTGAGAGCCGTCCCTTGCGGAAGCAGCCCCTGCGAGCATCTGATGATAATAATGGTGGAATTCCAAAACCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004664 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006558 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009094 GO:0009095 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0017144 GO:0019438 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0047769 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902221 GO:1902223

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

PDT

Protein Analysis

344

Amino Acids

37.44

Weight (kDa)

8.69

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDT	PF00800	103 - 278	4.2e-60	Prephenate dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07630 AT3G07630 AT3G07630
fragaria_vesca	FvH4_3g33680 FvH4_3g33680 FvH4_3g33680
malus_domestica	MD03G1109900.v1.1 MD11G1123300.v1.1
prunus_persica	Prupe.6G092500_v2.0.a1 Prupe.6G092500_v2.0.a1 Prupe.6G092500_v2.0.a1
pyrus_communis	pycom11g10410
rosa_chinensis	RchiOBHm_Chr5g0061191
rosa_laevigata	RLG00000003542 RLG00000035438
rosa_multiflora	Rmu_sc0001366.1_g000019
rosa_roxburghii	Rroxscaffold_1G00019520
rosa_rugosa	Rorug05G0338500
rosa_samantha	Rh5AG399300 Rh5BG412500 Rh5CG437200 Rh5DG426800
rosa_wichuraiana	Rw5G037670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	32
AciI	CCGC	6 cut(s)	5, 27, 30, 186, 502, 976
AcoI	YGGCCR	1 cut(s)	732
AcsI	RAATTY	3 cut(s)	457, 576, 1017
AcuI	CTGAAG	1 cut(s)	785
AcyI	GRCGYC	1 cut(s)	118
AfiI	CCNNNNNNNGG	4 cut(s)	178, 592, 610, 913
AgsI	TTSAA	5 cut(s)	326, 419, 575, 581, 865
AjnI	CCWGG	3 cut(s)	177, 641, 844
AluBI	AGCT	3 cut(s)	347, 560, 738
AluI	AGCT	3 cut(s)	347, 560, 738
Alw21I	GWGCWC	2 cut(s)	193, 633
Alw26I	GTCTC	1 cut(s)	147
AlwNI	CAGNNNCTG	1 cut(s)	988
Ama87I	CYCGRG	1 cut(s)	898
AoxI	GGCC	3 cut(s)	732, 857, 895
ApeKI	GCWGC	5 cut(s)	347, 686, 743, 746, 982
ApoI	RAATTY	3 cut(s)	457, 576, 1017
ArsI	GACNNNNNNTTYG	2 cut(s)	197, 229
AspS9I	GGNCC	1 cut(s)	896
AsuC2I	CCSGG	2 cut(s)	899, 900
AsuHPI	GGTGA	1 cut(s)	36
AvaI	CYCGRG	1 cut(s)	898
BalI	TGGCCA	1 cut(s)	734
BanII	GRGCYC	1 cut(s)	296
BbsI	GAAGAC	3 cut(s)	210, 252, 293
Bbv12I	GWGCWC	2 cut(s)	193, 633
BbvCI	CCTCAGC	1 cut(s)	288
BbvI	GCAGC	5 cut(s)	334, 698, 730, 733, 994
BccI	CCATC	3 cut(s)	64, 137, 612
BceAI	ACGGC	4 cut(s)	55, 131, 196, 951
BcgI	CGANNNNNNTGC	2 cut(s)	217, 251
BciT130I	CCWGG	3 cut(s)	179, 643, 846
BcnI	CCSGG	2 cut(s)	899, 900
BcoDI	GTCTC	1 cut(s)	147
BfaI	CTAG	3 cut(s)	87, 557, 887
BfmI	CTRYAG	1 cut(s)	747
BisI	GCNGC	8 cut(s)	6, 30, 348, 503, 687, 744, 747, 983
BlsI	GCNGC	8 cut(s)	7, 31, 349, 504, 688, 745, 748, 984
Bme1390I	CCNGG	5 cut(s)	179, 643, 846, 899, 900
BmeT110I	CYCGRG	1 cut(s)	898
BmgT120I	GGNCC	1 cut(s)	896
BmrFI	CCNGG	5 cut(s)	179, 643, 846, 899, 900
BmsI	GCATC	3 cut(s)	233, 483, 1004
BoxI	GACNNNNGTC	1 cut(s)	256
BpiI	GAAGAC	3 cut(s)	210, 252, 293
Bpu10I	CCTNAGC	1 cut(s)	288
BpuMI	CCSGG	2 cut(s)	899, 900
BsaHI	GRCGYC	1 cut(s)	118
BsaJI	CCNNGG	2 cut(s)	565, 898
BsaXI	ACNNNNNCTCC	2 cut(s)	36, 66
Bsc4I	CCNNNNNNNGG	4 cut(s)	178, 592, 610, 913
Bse3DI	GCAATG	3 cut(s)	15, 547, 932
BseBI	CCWGG	3 cut(s)	179, 643, 846
BseDI	CCNNGG	2 cut(s)	565, 898
BseGI	GGATG	4 cut(s)	474, 604, 676, 796
BseLI	CCNNNNNNNGG	4 cut(s)	178, 592, 610, 913
BseMI	GCAATG	3 cut(s)	15, 547, 932
BseMII	CTCAG	3 cut(s)	279, 613, 635
BseXI	GCAGC	5 cut(s)	334, 698, 730, 733, 994
BsgI	GTGCAG	1 cut(s)	705
Bsh1236I	CGCG	1 cut(s)	32
BshFI	GGCC	3 cut(s)	734, 859, 897
BsiHKAI	GWGCWC	2 cut(s)	193, 633
BsiHKCI	CYCGRG	1 cut(s)	898
BsiSI	CCGG	1 cut(s)	899
BslFI	GGGAC	1 cut(s)	954
BslI	CCNNNNNNNGG	4 cut(s)	178, 592, 610, 913
BsmAI	GTCTC	1 cut(s)	147
BsmBI	CGTCTC	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	954
BsmI	GAATGC	1 cut(s)	701
BsnI	GGCC	3 cut(s)	734, 859, 897
BsoBI	CYCGRG	1 cut(s)	898
Bsp1286I	GDGCHC	3 cut(s)	193, 296, 633
Bsp143I	GATC	2 cut(s)	76, 942
Bsp19I	CCATGG	1 cut(s)	565
BspACI	CCGC	6 cut(s)	5, 27, 30, 186, 502, 976
BspANI	GGCC	3 cut(s)	734, 859, 897
BspCNI	CTCAG	3 cut(s)	280, 612, 634
BspFNI	CGCG	1 cut(s)	32
BspMAI	CTGCAG	1 cut(s)	751
BsrDI	GCAATG	3 cut(s)	15, 547, 932
BssECI	CCNNGG	2 cut(s)	565, 898
BssMI	GATC	2 cut(s)	76, 942
BssNI	GRCGYC	1 cut(s)	118
BssT1I	CCWWGG	1 cut(s)	565
Bst2UI	CCWGG	3 cut(s)	179, 643, 846
Bst4CI	ACNGT	4 cut(s)	338, 403, 423, 761
Bst6I	CTCTTC	2 cut(s)	150, 249
BstACI	GRCGYC	1 cut(s)	118
BstAPI	GCANNNNNTGC	2 cut(s)	511, 988
BstC8I	GCNNGC	2 cut(s)	736, 993
BstDEI	CTNAG	3 cut(s)	288, 599, 621
BstDSI	CCRYGG	1 cut(s)	565
BstENI	CCTNNNNNAGG	1 cut(s)	911
BstF5I	GGATG	4 cut(s)	474, 604, 676, 796
BstFNI	CGCG	1 cut(s)	32
BstKTI	GATC	2 cut(s)	79, 945
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	2 cut(s)	76, 942
BstMWI	GCNNNNNNNGC	8 cut(s)	26, 356, 511, 686, 740, 929, 982, 988
BstNI	CCWGG	3 cut(s)	179, 643, 846
BstNSI	RCATGY	1 cut(s)	698
BstPAI	GACNNNNGTC	1 cut(s)	256
BstSCI	CCNGG	5 cut(s)	177, 641, 844, 897, 898
BstSFI	CTRYAG	1 cut(s)	747
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	5 cut(s)	334, 698, 730, 733, 994
BstV2I	GAAGAC	3 cut(s)	210, 252, 293
BsuRI	GGCC	3 cut(s)	734, 859, 897
BtgI	CCRYGG	1 cut(s)	565
BtsCI	GGATG	4 cut(s)	474, 604, 676, 796
BtsI	GCAGTG	3 cut(s)	384, 672, 735
BtsIMutI	CAGTG	5 cut(s)	343, 384, 629, 672, 735
Cac8I	GCNNGC	2 cut(s)	736, 993
CaiI	CAGNNNCTG	1 cut(s)	988
Cfr13I	GGNCC	1 cut(s)	896
Cfr9I	CCCGGG	1 cut(s)	898
CseI	GACGC	3 cut(s)	107, 230, 926
CsiI	ACCWGGT	2 cut(s)	177, 641
CviAII	CATG	2 cut(s)	566, 695
DdeI	CTNAG	3 cut(s)	288, 599, 621
DpnI	GATC	2 cut(s)	78, 944
DpnII	GATC	2 cut(s)	76, 942
EaeI	YGGCCR	1 cut(s)	732
Eam1104I	CTCTTC	2 cut(s)	150, 249
EarI	CTCTTC	2 cut(s)	150, 249
Eco130I	CCWWGG	1 cut(s)	565
Eco24I	GRGCYC	1 cut(s)	296
Eco57I	CTGAAG	1 cut(s)	785
Eco88I	CYCGRG	1 cut(s)	898
EcoNI	CCTNNNNNAGG	1 cut(s)	911
EcoRI	GAATTC	2 cut(s)	457, 1017
EcoRII	CCWGG	3 cut(s)	177, 641, 844
EcoT14I	CCWWGG	1 cut(s)	565
EcoT38I	GRGCYC	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	565
Esp3I	CGTCTC	1 cut(s)	147
FaeI	CATG	2 cut(s)	569, 698
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
FaqI	GGGAC	1 cut(s)	954
FatI	CATG	2 cut(s)	565, 694
Fnu4HI	GCNGC	8 cut(s)	6, 30, 348, 503, 687, 744, 747, 983
FokI	GGATG	4 cut(s)	461, 591, 683, 803
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	8 cut(s)	6, 30, 348, 503, 687, 744, 747, 983
FspBI	CTAG	3 cut(s)	87, 557, 887
GluI	GCNGC	8 cut(s)	6, 30, 348, 503, 687, 744, 747, 983
HaeIII	GGCC	3 cut(s)	734, 859, 897
HapII	CCGG	1 cut(s)	899
HgaI	GACGC	3 cut(s)	107, 230, 926
Hin1I	GRCGYC	1 cut(s)	118
Hin1II	CATG	2 cut(s)	569, 698
HinfI	GANTC	4 cut(s)	34, 341, 719, 903
HpaII	CCGG	1 cut(s)	899
HphI	GGTGA	1 cut(s)	36
Hpy166II	GTNNAC	1 cut(s)	433
Hpy188I	TCNGA	5 cut(s)	76, 659, 765, 942, 1000
Hpy188III	TCNNGA	7 cut(s)	194, 572, 581, 723, 788, 865, 887
Hpy8I	GTNNAC	1 cut(s)	433
Hpy99I	CGWCG	3 cut(s)	123, 221, 224
HpyAV	CCTTC	1 cut(s)	887
HpyCH4III	ACNGT	4 cut(s)	338, 403, 423, 761
HpyCH4V	TGCA	8 cut(s)	238, 514, 539, 686, 701, 749, 776, 932
HpyF10VI	GCNNNNNNNGC	8 cut(s)	26, 356, 511, 686, 740, 929, 982, 988
HpyF3I	CTNAG	3 cut(s)	288, 599, 621
Hsp92I	GRCGYC	1 cut(s)	118
Hsp92II	CATG	2 cut(s)	569, 698
Kzo9I	GATC	2 cut(s)	76, 942
LmnI	GCTCC	2 cut(s)	329, 725
Lsp1109I	GCAGC	5 cut(s)	334, 698, 730, 733, 994
LweI	GCATC	3 cut(s)	233, 483, 1004
MabI	ACCWGGT	2 cut(s)	177, 641
MaeI	CTAG	3 cut(s)	87, 557, 887
MaeIII	GTNAC	1 cut(s)	805
MalI	GATC	2 cut(s)	78, 944
MboI	GATC	2 cut(s)	76, 942
MboII	GAAGA	6 cut(s)	137, 215, 236, 252, 293, 778
MhlI	GDGCHC	3 cut(s)	193, 296, 633
MlsI	TGGCCA	1 cut(s)	734
MluCI	AATT	7 cut(s)	277, 367, 392, 457, 484, 576, 1017
MluNI	TGGCCA	1 cut(s)	734
MlyI	GAGTC	3 cut(s)	28, 350, 912
MnlI	CCTC	9 cut(s)	60, 76, 146, 283, 283, 403, 772, 833, 883
Mox20I	TGGCCA	1 cut(s)	734
MscI	TGGCCA	1 cut(s)	734
MseI	TTAA	2 cut(s)	638, 912
Msp20I	TGGCCA	1 cut(s)	734
MspA1I	CMGCKG	1 cut(s)	347
MspI	CCGG	1 cut(s)	899
MspR9I	CCNGG	5 cut(s)	179, 643, 846, 899, 900
Mva1269I	GAATGC	1 cut(s)	701
MvaI	CCWGG	3 cut(s)	179, 643, 846
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	8 cut(s)	26, 356, 511, 686, 740, 929, 982, 988
NciI	CCSGG	2 cut(s)	899, 900
NcoI	CCATGG	1 cut(s)	565
NdeII	GATC	2 cut(s)	76, 942
NlaIII	CATG	2 cut(s)	569, 698
NspI	RCATGY	1 cut(s)	698
PctI	GAATGC	1 cut(s)	701
PfeI	GAWTC	1 cut(s)	719
PkrI	GCNGC	8 cut(s)	7, 31, 349, 504, 688, 745, 748, 984
PleI	GAGTC	3 cut(s)	28, 349, 911
PpsI	GAGTC	3 cut(s)	28, 349, 911
PshAI	GACNNNNGTC	1 cut(s)	256
Psp6I	CCWGG	3 cut(s)	177, 641, 844
PspGI	CCWGG	3 cut(s)	177, 641, 844
PspPI	GGNCC	1 cut(s)	896
PstI	CTGCAG	1 cut(s)	751
PstNI	CAGNNNCTG	1 cut(s)	988
PvuII	CAGCTG	1 cut(s)	347
SaqAI	TTAA	2 cut(s)	638, 912
SatI	GCNGC	8 cut(s)	6, 30, 348, 503, 687, 744, 747, 983
Sau3AI	GATC	2 cut(s)	76, 942
Sau96I	GGNCC	1 cut(s)	896
SchI	GAGTC	3 cut(s)	28, 350, 912
ScrFI	CCNGG	5 cut(s)	179, 643, 846, 899, 900
SduI	GDGCHC	3 cut(s)	193, 296, 633
SexAI	ACCWGGT	2 cut(s)	177, 641
SfaNI	GCATC	3 cut(s)	233, 483, 1004
SfcI	CTRYAG	1 cut(s)	747
SmaI	CCCGGG	1 cut(s)	900
Sse9I	AATT	7 cut(s)	277, 367, 392, 457, 484, 576, 1017
SsiI	CCGC	6 cut(s)	5, 27, 30, 186, 502, 976
SspMI	CTAG	3 cut(s)	87, 557, 887
StyD4I	CCNGG	5 cut(s)	177, 641, 844, 897, 898
StyI	CCWWGG	1 cut(s)	565
TaaI	ACNGT	4 cut(s)	338, 403, 423, 761
TaqI	TCGA	7 cut(s)	22, 59, 216, 227, 263, 544, 811
TasI	AATT	7 cut(s)	277, 367, 392, 457, 484, 576, 1017
TauI	GCSGC	3 cut(s)	8, 32, 505
TfiI	GAWTC	1 cut(s)	719
Tru1I	TTAA	2 cut(s)	638, 912
Tru9I	TTAA	2 cut(s)	638, 912
TscAI	CASTG	5 cut(s)	343, 384, 629, 672, 735
TseI	GCWGC	5 cut(s)	347, 686, 743, 746, 982
TspDTI	ATGAA	1 cut(s)	450
TspGWI	ACGGA	3 cut(s)	165, 171, 177
TspMI	CCCGGG	1 cut(s)	898
TspRI	CASTG	5 cut(s)	343, 384, 629, 672, 735
XagI	CCTNNNNNAGG	1 cut(s)	911
XapI	RAATTY	3 cut(s)	457, 576, 1017
XbaI	TCTAGA	1 cut(s)	886
XceI	RCATGY	1 cut(s)	698
XmaI	CCCGGG	1 cut(s)	898
XspI	CTAG	3 cut(s)	87, 557, 887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.