Prupe.6G092500_v2.0.a1

Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
6373472 .. 6378358
4887 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G092500.2

Sequence Viewer

Length: 1200 bp
ATGGCGGCGTCTTCTGTTGCACGATCCTCAACAACCCCTTTCCCACTAAACTTCGTATCGAAACCCTCGCAGTCCGATCACTTTCCCAAAACAGCTTTAAACTTCGACCCTCGCTTCAAACGCTGTCGCATCGCCCTGGCCCTGGCCTATCTTCGCTCAGACGACAACGATCGCAGCAGAAACGGCGGCGACGGCCACAACCACCTGGTTGGAGGTGCTCTCGAATTGGACAGCAGCGCCTTCGAGGACTTCCCCTACGACGTCGTATCGAAAGACTTGCATACTCTCCCAAGACCTTTGTCGTCGACCCATCTCTCCAATTCGGTCTCTGATGGCTCCCGCCTTCGTGTTGCATATCAGGGGGTTCGTGGAGCATATAGTGAATCAGCTGCGGAGAAAGCATATCCAAACTGCGAAGCAGTGCCTTGTGAACAATTTGATACCGCTTTTGAAGCTGTTGAACGTTGGCTTGTGGACAGAGCAGTCTTACCAATTGAGAATTCATTAGGTGGAAGCATCCACAGAAACTATGACCTTTTACTCAGGCACAGGTTGCATATAGTAGGGGAAGTGAAACTTGCAGTTCGGCATTGCTTACTGGCTAATCATGGTGTTGAAGTGGAAGACCTGAAAAGGGTTCTTAGCCATCCACAGGCTCTTTCTCAGTGTGAGCACACGTTAACCAAGTTGGGATTGGTCCGAGAAGCAGTGGATGATACTGCTGGTGCAGCAAAGCATGTTGCTTTCCACAAACTAAAAGATACAGGAGCTGTTGCTAGCTCAGCAGCTGCAGACATTTATGGTCTGACGATACTTGCACAGGATATTCAGGATGATTGTGACAATGTGACTCGGTTTCTAATGCTTGCAAGAGAACCTATTATTCCCGGCACAGATAGACCATTCAAGACGAGTATAGTTTTCTCACTAGAGGAAGGCCCTGGGGTCCTTTTTAAGGCGCTTGCTGTTTTTGCTTTGCGTCAAATCAATCTCACAAAGATTGAAAGCCGTCCCTTGCGGAAGCAACCGCTGCGAGCATCTGATGATAATAATGGCAGATACTTTGACTATCTTTTTTATGTGGATTTTGAAGCATCAATGGCTGATCAAAGTGCACAAAATGCCCTTAGGCATCTGAAGGAATTCGCCACATTCTTGCGGGTGCTAGGGAGTTATCCGATGGATAGAAGCATGATATGA

Protein Analysis

400

Amino Acids

44.23

Weight (kDa)

6.43

Isoelectric Point (pI)

42.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 482
AatII GACGTC 1 cut(s) 264
AccI GTMKAC 1 cut(s) 305
AciI CCGC 8 cut(s) 5, 186, 340, 392, 444, 1018, 1028, 1159
AclI AACGTT 1 cut(s) 463
AclWI GGATC 1 cut(s) 18
AcoI YGGCCR 1 cut(s) 193
AcsI RAATTY 2 cut(s) 499, 1142
AcuI CTGAAG 1 cut(s) 1157
AcyI GRCGYC 2 cut(s) 8, 261
AfiI CCNNNNNNNGG 4 cut(s) 142, 634, 652, 955
AflIII ACRYGT 1 cut(s) 675
AgsI TTSAA 7 cut(s) 118, 452, 461, 617, 907, 1004, 1091
AjnI CCWGG 4 cut(s) 135, 141, 204, 940
AjuI GAANNNNNNNTTGG 2 cut(s) 484, 516
AluBI AGCT 6 cut(s) 95, 389, 455, 770, 780, 788
AluI AGCT 6 cut(s) 95, 389, 455, 770, 780, 788
Alw21I GWGCWC 3 cut(s) 220, 675, 1117
Alw26I GTCTC 1 cut(s) 331
Alw44I GTGCAC 1 cut(s) 1113
AlwI GGATC 1 cut(s) 18
AlwNI CAGNNNCTG 2 cut(s) 770, 788
AoxI GGCC 4 cut(s) 138, 144, 193, 937
ApaLI GTGCAC 1 cut(s) 1113
ApeKI GCWGC 7 cut(s) 174, 234, 389, 728, 785, 788, 1030
ApoI RAATTY 2 cut(s) 499, 1142
Asp700I GAANNNNTTC 1 cut(s) 1142
AspLEI GCGC 2 cut(s) 239, 961
AspS9I GGNCC 4 cut(s) 139, 697, 938, 946
AsuC2I CCSGG 1 cut(s) 888
AsuNHI GCTAGC 1 cut(s) 776
AvaII GGWCC 2 cut(s) 697, 946
AxyI CCTNAGG 1 cut(s) 1127
BaeGI GKGCMC 1 cut(s) 1117
BbsI GAAGAC 2 cut(s) 3, 630
Bbv12I GWGCWC 3 cut(s) 220, 675, 1117
BbvI GCAGC 7 cut(s) 186, 246, 376, 740, 775, 797, 1017
BccI CCATC 4 cut(s) 318, 326, 654, 1174
BceAI ACGGC 3 cut(s) 199, 208, 993
BcgI CGANNNNNNTGC 4 cut(s) 223, 257, 259, 293
BciT130I CCWGG 4 cut(s) 137, 143, 206, 942
BclI TGATCA 1 cut(s) 1105
BcnI CCSGG 1 cut(s) 888
BcoDI GTCTC 1 cut(s) 331
BfaI CTAG 3 cut(s) 777, 929, 1166
BfmI CTRYAG 1 cut(s) 789
BfoI RGCGCY 2 cut(s) 240, 962
BisI GCNGC 9 cut(s) 6, 175, 187, 235, 390, 729, 786, 789, 1031
BlpI GCTNAGC 1 cut(s) 781
BlsI GCNGC 9 cut(s) 7, 176, 188, 236, 391, 730, 787, 790, 1032
Bme1390I CCNGG 5 cut(s) 137, 143, 206, 888, 942
Bme18I GGWCC 2 cut(s) 697, 946
BmgT120I GGNCC 4 cut(s) 139, 697, 938, 946
BmiI GGNNCC 2 cut(s) 337, 947
BmrFI CCNGG 5 cut(s) 137, 143, 206, 888, 942
BmsI GCATC 5 cut(s) 138, 525, 1046, 1103, 1141
BmtI GCTAGC 1 cut(s) 780
BoxI GACNNNNGTC 1 cut(s) 298
BpiI GAAGAC 2 cut(s) 3, 630
BplI GAGNNNNNCTC 2 cut(s) 204, 236
Bpu1102I GCTNAGC 1 cut(s) 781
BpuMI CCSGG 1 cut(s) 888
BsaHI GRCGYC 2 cut(s) 8, 261
BsaI GGTCTC 1 cut(s) 331
BsaJI CCNNGG 4 cut(s) 135, 141, 940, 941
Bsc4I CCNNNNNNNGG 4 cut(s) 142, 634, 652, 955
Bse1I ACTGG 1 cut(s) 603
Bse21I CCTNAGG 1 cut(s) 1127
Bse3DI GCAATG 1 cut(s) 589
BseBI CCWGG 4 cut(s) 137, 143, 206, 942
BseDI CCNNGG 4 cut(s) 135, 141, 940, 941
BseGI GGATG 4 cut(s) 516, 646, 718, 838
BseLI CCNNNNNNNGG 4 cut(s) 142, 634, 652, 955
BseMI GCAATG 1 cut(s) 589
BseMII CTCAG 4 cut(s) 171, 556, 677, 795
BseNI ACTGG 1 cut(s) 603
BseSI GKGCMC 1 cut(s) 1117
BseXI GCAGC 7 cut(s) 186, 246, 376, 740, 775, 797, 1017
BsgI GTGCAG 1 cut(s) 747
Bsh1285I CGRYCG 1 cut(s) 172
BshFI GGCC 4 cut(s) 140, 146, 195, 939
BsiEI CGRYCG 1 cut(s) 172
BsiHKAI GWGCWC 3 cut(s) 220, 675, 1117
BsiSI CCGG 1 cut(s) 888
BslFI GGGAC 1 cut(s) 996
BslI CCNNNNNNNGG 4 cut(s) 142, 634, 652, 955
BsmAI GTCTC 1 cut(s) 331
BsmFI GGGAC 1 cut(s) 996
BsnI GGCC 4 cut(s) 140, 146, 195, 939
Bso31I GGTCTC 1 cut(s) 331
Bsp1286I GDGCHC 3 cut(s) 220, 675, 1117
Bsp143I GATC 4 cut(s) 23, 76, 169, 1105
Bsp1720I GCTNAGC 1 cut(s) 781
BspACI CCGC 8 cut(s) 5, 186, 340, 392, 444, 1018, 1028, 1159
BspANI GGCC 4 cut(s) 140, 146, 195, 939
BspCNI CTCAG 4 cut(s) 170, 555, 676, 794
BspLI GGNNCC 2 cut(s) 337, 947
BspMAI CTGCAG 1 cut(s) 793
BspOI GCTAGC 1 cut(s) 780
BspPI GGATC 1 cut(s) 18
BspTNI GGTCTC 1 cut(s) 331
BsrDI GCAATG 1 cut(s) 589
BsrI ACTGG 1 cut(s) 603
BssECI CCNNGG 4 cut(s) 135, 141, 940, 941
BssMI GATC 4 cut(s) 23, 76, 169, 1105
BssNI GRCGYC 2 cut(s) 8, 261
Bst2UI CCWGG 4 cut(s) 137, 143, 206, 942
BstACI GRCGYC 2 cut(s) 8, 261
BstAPI GCANNNNNTGC 3 cut(s) 553, 1030, 1121
BstC8I GCNNGC 4 cut(s) 778, 867, 963, 1035
BstDEI CTNAG 6 cut(s) 157, 542, 641, 663, 781, 1127
BstENI CCTNNNNNAGG 1 cut(s) 953
BstF5I GGATG 4 cut(s) 516, 646, 718, 838
BstH2I RGCGCY 2 cut(s) 240, 962
BstHHI GCGC 2 cut(s) 239, 961
BstKTI GATC 4 cut(s) 26, 79, 172, 1108
BstMAI GTCTC 1 cut(s) 331
BstMBI GATC 4 cut(s) 23, 76, 169, 1105
BstMCI CGRYCG 1 cut(s) 172
BstNI CCWGG 4 cut(s) 137, 143, 206, 942
BstNSI RCATGY 1 cut(s) 740
BstPAI GACNNNNGTC 1 cut(s) 298
BstSCI CCNGG 5 cut(s) 135, 141, 204, 886, 940
BstSFI CTRYAG 1 cut(s) 789
BstSLI GKGCMC 1 cut(s) 1117
BstV1I GCAGC 7 cut(s) 186, 246, 376, 740, 775, 797, 1017
BstV2I GAAGAC 2 cut(s) 3, 630
BstXI CCANNNNNNTGG 1 cut(s) 209
Bsu36I CCTNAGG 1 cut(s) 1127
BsuRI GGCC 4 cut(s) 140, 146, 195, 939
BtgZI GCGATG 1 cut(s) 115
BtsCI GGATG 4 cut(s) 516, 646, 718, 838
BtsI GCAGTG 2 cut(s) 426, 714
BtsIMutI CAGTG 3 cut(s) 426, 671, 714
Cac8I GCNNGC 4 cut(s) 778, 867, 963, 1035
CaiI CAGNNNCTG 2 cut(s) 770, 788
CfoI GCGC 2 cut(s) 239, 961
Cfr13I GGNCC 4 cut(s) 139, 697, 938, 946
CseI GACGC 1 cut(s) 968
CsiI ACCWGGT 1 cut(s) 204
CviAII CATG 3 cut(s) 608, 737, 1192
DdeI CTNAG 6 cut(s) 157, 542, 641, 663, 781, 1127
DpnI GATC 4 cut(s) 25, 78, 171, 1107
DpnII GATC 4 cut(s) 23, 76, 169, 1105
DraI TTTAAA 1 cut(s) 99
DrdI GACNNNNNNGTC 1 cut(s) 482
DseDI GACNNNNNNGTC 1 cut(s) 482
EaeI YGGCCR 1 cut(s) 193
Eco31I GGTCTC 1 cut(s) 331
Eco47I GGWCC 2 cut(s) 697, 946
Eco57I CTGAAG 1 cut(s) 1157
Eco81I CCTNAGG 1 cut(s) 1127
EcoNI CCTNNNNNAGG 1 cut(s) 953
EcoO109I RGGNCCY 2 cut(s) 938, 946
EcoRI GAATTC 2 cut(s) 499, 1142
EcoRII CCWGG 4 cut(s) 135, 141, 204, 940
FaeI CATG 3 cut(s) 611, 740, 1195
FalI AAGNNNNNCTT 2 cut(s) 561, 593
FaqI GGGAC 1 cut(s) 996
FatI CATG 3 cut(s) 607, 736, 1191
FauI CCCGC 2 cut(s) 347, 1152
FbaI TGATCA 1 cut(s) 1105
FblI GTMKAC 1 cut(s) 305
Fnu4HI GCNGC 9 cut(s) 6, 175, 187, 235, 390, 729, 786, 789, 1031
FokI GGATG 4 cut(s) 503, 633, 725, 845
Fsp4HI GCNGC 9 cut(s) 6, 175, 187, 235, 390, 729, 786, 789, 1031
FspBI CTAG 3 cut(s) 777, 929, 1166
GlaI GCGC 2 cut(s) 238, 960
GluI GCNGC 9 cut(s) 6, 175, 187, 235, 390, 729, 786, 789, 1031
HaeII RGCGCY 2 cut(s) 240, 962
HaeIII GGCC 4 cut(s) 140, 146, 195, 939
HapII CCGG 1 cut(s) 888
HgaI GACGC 1 cut(s) 968
HhaI GCGC 2 cut(s) 239, 961
Hin1I GRCGYC 2 cut(s) 8, 261
Hin1II CATG 3 cut(s) 611, 740, 1195
Hin6I GCGC 2 cut(s) 237, 959
HinP1I GCGC 2 cut(s) 237, 959
HincII GTYRAC 2 cut(s) 306, 681
HindII GTYRAC 2 cut(s) 306, 681
HinfI GANTC 2 cut(s) 383, 850
HpaI GTTAAC 1 cut(s) 681
HpaII CCGG 1 cut(s) 888
Hpy166II GTNNAC 5 cut(s) 306, 431, 475, 681, 1115
Hpy188I TCNGA 8 cut(s) 76, 160, 331, 701, 807, 1042, 1137, 1179
Hpy188III TCNNGA 3 cut(s) 221, 830, 907
Hpy8I GTNNAC 5 cut(s) 306, 431, 475, 681, 1115
Hpy99I CGWCG 4 cut(s) 194, 263, 266, 307
HpyAV CCTTC 4 cut(s) 250, 353, 929, 1132
HpyCH4IV ACGT 3 cut(s) 261, 463, 677
HpyF3I CTNAG 6 cut(s) 157, 542, 641, 663, 781, 1127
HpySE526I ACGT 3 cut(s) 261, 463, 677
Hsp92I GRCGYC 2 cut(s) 8, 261
Hsp92II CATG 3 cut(s) 611, 740, 1195
HspAI GCGC 2 cut(s) 237, 959
Ksp22I TGATCA 1 cut(s) 1105
KspAI GTTAAC 1 cut(s) 681
Kzo9I GATC 4 cut(s) 23, 76, 169, 1105
LmnI GCTCC 3 cut(s) 341, 371, 767
Lsp1109I GCAGC 7 cut(s) 186, 246, 376, 740, 775, 797, 1017
LweI GCATC 5 cut(s) 138, 525, 1046, 1103, 1141
MabI ACCWGGT 1 cut(s) 204
MaeI CTAG 3 cut(s) 777, 929, 1166
MaeII ACGT 3 cut(s) 261, 463, 677
MaeIII GTNAC 2 cut(s) 839, 847
MalI GATC 4 cut(s) 25, 78, 171, 1107
MboI GATC 4 cut(s) 23, 76, 169, 1105
MboII GAAGA 3 cut(s) 3, 143, 635
MfeI CAATTG 1 cut(s) 492
MhlI GDGCHC 3 cut(s) 220, 675, 1117
MluCI AATT 6 cut(s) 224, 319, 434, 492, 499, 1142
MlyI GAGTC 1 cut(s) 844
MmeI TCCRAC 1 cut(s) 190
MnlI CCTC 6 cut(s) 37, 76, 120, 206, 238, 925
MroXI GAANNNNTTC 1 cut(s) 1142
MseI TTAA 3 cut(s) 98, 680, 954
MspA1I CMGCKG 3 cut(s) 389, 788, 1030
MspI CCGG 1 cut(s) 888
MspR9I CCNGG 5 cut(s) 137, 143, 206, 888, 942
MunI CAATTG 1 cut(s) 492
MvaI CCWGG 4 cut(s) 137, 143, 206, 942
NciI CCSGG 1 cut(s) 888
NdeII GATC 4 cut(s) 23, 76, 169, 1105
NheI GCTAGC 1 cut(s) 776
NlaIII CATG 3 cut(s) 611, 740, 1195
NlaIV GGNNCC 2 cut(s) 337, 947
NmuCI GTSAC 2 cut(s) 839, 847
NspI RCATGY 1 cut(s) 740
PasI CCCWGGG 1 cut(s) 941
PdmI GAANNNNTTC 1 cut(s) 1142
PfeI GAWTC 1 cut(s) 383
PkrI GCNGC 9 cut(s) 7, 176, 188, 236, 391, 730, 787, 790, 1032
Ple19I CGATCG 1 cut(s) 172
PleI GAGTC 1 cut(s) 844
PpsI GAGTC 1 cut(s) 844
PpuMI RGGWCCY 1 cut(s) 946
PshAI GACNNNNGTC 1 cut(s) 298
Psp1406I AACGTT 1 cut(s) 463
Psp5II RGGWCCY 1 cut(s) 946
Psp6I CCWGG 4 cut(s) 135, 141, 204, 940
PspGI CCWGG 4 cut(s) 135, 141, 204, 940
PspN4I GGNNCC 2 cut(s) 337, 947
PspPI GGNCC 4 cut(s) 139, 697, 938, 946
PspPPI RGGWCCY 1 cut(s) 946
PstI CTGCAG 1 cut(s) 793
PstNI CAGNNNCTG 2 cut(s) 770, 788
PvuI CGATCG 1 cut(s) 172
PvuII CAGCTG 2 cut(s) 389, 788
SalI GTCGAC 1 cut(s) 304
SaqAI TTAA 3 cut(s) 98, 680, 954
SatI GCNGC 9 cut(s) 6, 175, 187, 235, 390, 729, 786, 789, 1031
Sau3AI GATC 4 cut(s) 23, 76, 169, 1105
Sau96I GGNCC 4 cut(s) 139, 697, 938, 946
SchI GAGTC 1 cut(s) 844
ScrFI CCNGG 5 cut(s) 137, 143, 206, 888, 942
SduI GDGCHC 3 cut(s) 220, 675, 1117
SexAI ACCWGGT 1 cut(s) 204
SfaNI GCATC 5 cut(s) 138, 525, 1046, 1103, 1141
SfcI CTRYAG 1 cut(s) 789
SinI GGWCC 2 cut(s) 697, 946
Sse9I AATT 6 cut(s) 224, 319, 434, 492, 499, 1142
SsiI CCGC 8 cut(s) 5, 186, 340, 392, 444, 1018, 1028, 1159
SspMI CTAG 3 cut(s) 777, 929, 1166
StyD4I CCNGG 5 cut(s) 135, 141, 204, 886, 940
TaiI ACGT 3 cut(s) 264, 466, 680
TaqI TCGA 6 cut(s) 59, 105, 222, 243, 269, 305
TaqII GACCGA 1 cut(s) 313
TasI AATT 6 cut(s) 224, 319, 434, 492, 499, 1142
TauI GCSGC 2 cut(s) 8, 189
TfiI GAWTC 1 cut(s) 383
Tru1I TTAA 3 cut(s) 98, 680, 954
Tru9I TTAA 3 cut(s) 98, 680, 954
TscAI CASTG 3 cut(s) 426, 671, 714
TseFI GTSAC 2 cut(s) 839, 847
TseI GCWGC 7 cut(s) 174, 234, 389, 728, 785, 788, 1030
Tsp45I GTSAC 2 cut(s) 839, 847
TspDTI ATGAA 1 cut(s) 492
TspRI CASTG 3 cut(s) 426, 671, 714
VneI GTGCAC 1 cut(s) 1113
VpaK11BI GGWCC 2 cut(s) 697, 946
XagI CCTNNNNNAGG 1 cut(s) 953
XapI RAATTY 2 cut(s) 499, 1142
XceI RCATGY 1 cut(s) 740
XcmI CCANNNNNNNNNTGG 1 cut(s) 691
XmiI GTMKAC 1 cut(s) 305
XmnI GAANNNNTTC 1 cut(s) 1142
XspI CTAG 3 cut(s) 777, 929, 1166
ZraI GACGTC 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.