FvH4_3g36011

GTP-binding protein OBGM, mitochondrial

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
30918459 .. 30925065
6607 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36011.t5

Sequence Viewer

Length: 1497 bp
ATGTGGCTGCAGCGTGCAAAACCGTTCAGGCACATAAAGGCCTTGCGGCAGTGTTCTAAGTCTCCATGGATTTTTTCAATATCGTCTTCCTACTCAGATTCTCCGCACAAGAAGTTGAAGATTGCCCCACTACAGGAAAGGAAAATGATAGACAGGTTTAGGCTGTATGCCAAAGGGGGGAGTGGGGGCAGTGGTTGCTCCAGCACTCGCCGTAGTCGCCATGATCGCCATGGCATACCTGATGGTGGAAATGGTGGAAGAGGTGGTGATGTAATTTTGGAATGTTCTACAACAGTTTGGGACTTCAGCGGTTTGCAACCTCACCTTATAGCACAGAGAGGGGGACATGGATCCTCGAAGAATAAAATTGGCACCCGAGGAGCGGATAAGGTTGCCCAAGTGCCCATCGGTACGGTGATTCATCTTATGAAGGGTGAAATTCCTTTTGTTGCCCAAAGCCAAGTTTGTAAAGATTTGGATCCATGGGAGCTTCCAGGTACTCCTATTGATGATGTAACTGGCTCTGATCAGCATTCTGCCCCTAGTGGCCCAAATATGGCAGTGGATACTGCTAGCTCATCAATTCGACTTGAAAGAATTGTTGATAAAGCAGCTCACATGACGAAAATCACCCAAGTTGAATCCACTGAGGTTCCTACTCAATCTCCACCTTCGTTTGAGATGTGCACAGAAGATGAGACAGAGGAAGAAGAACAAATTCAATACAACGTTGCTGAGTTAACAGTTAGGGGTCAACGATTAGTTATTGCTCATGGAGCGGAAGGTGGATTAGGTAGCGTGTCTCTCAAAGTCCCAAAGAAATTTAAAACGGATCCGTTAGATGCTCAAGTATCTGATGATGATCAGTTGGCCCTCAGTGCTGGTATGCCTGGTTCAGAAGCTGTTCTCATATTAGAACTAAAGAGCATTGCTGATGTGAGCCTAGTGGGAATGCCAAATGCTGGTAAAAGTACGCTGTTAGGGGGTATATCTAGGGCTAAGCCTGCTGTTGGCCATTACGCCTTCACCACTCTTAGACCCAATTTGGGGAATTTAAACTTTGATGACTTTTCACTCACAGTTGCTGATGTTCCGGGACTCATAAAGGGTGCCCATGAGAATCGAGGACTTGGACATGCATTCCTCCGTCACATAGAACGAACAAAGGTTATAGCTTATGTGGTGGACTTGGCTGCCGGATTGGATGGTCGAAAAGGTACCCCACCTTGGGAACAGCTTAGGGATTTGGTCTTAGAGCTTGAGTATCATCAAGTGGGTTTATCTGATCGACCATCACTCATAGTGGCAAACAAAATAGATGAGGAAGGGACTGAAGGTGTGCATGAAGAACTGAAAAGAAGGGTACAAGATGTTCCTATATTCCCTGTCTGTGCTATTCTGGGAGAAGGAATTCAAGAGCTAAAGATTGGTCTTAGGAAACTTGTGAACGGTGAAATGACAGACAGACTCCGGGTCGATAAAATTATGGTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

499

Amino Acids

54.09

Weight (kDa)

6.48

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP1_OBG PF01018 50 - 142 7.3e-25 GTP1/OBG
MMR_HSR1 PF01926 313 - 438 4.2e-22 50S ribosome-binding GTPase
FeoB_N PF02421 313 - 475 1e-09 Ferrous iron transport protein B
Arf PF00025 313 - 474 6.1e-06 ADP-ribosylation factor family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1217
AccB1I GGYRCC 3 cut(s) 371, 1109, 1217
AccB7I CCANNNNNTGG 1 cut(s) 962
AccBSI CCGCTC 2 cut(s) 383, 779
AciI CCGC 5 cut(s) 46, 104, 309, 383, 779
AclI AACGTT 1 cut(s) 729
AclWI GGATC 6 cut(s) 345, 358, 473, 486, 827, 840
AcoI YGGCCR 1 cut(s) 1012
AcsI RAATTY 5 cut(s) 438, 717, 821, 1051, 1410
AcuI CTGAAG 2 cut(s) 289, 1353
AfaI GTAC 5 cut(s) 412, 499, 973, 1219, 1365
AgsI TTSAA 6 cut(s) 78, 118, 593, 641, 722, 1415
AhdI GACNNNNNGTC 1 cut(s) 1472
AjnI CCWGG 2 cut(s) 493, 889
AluBI AGCT 8 cut(s) 490, 576, 614, 902, 1175, 1237, 1258, 1420
AluI AGCT 8 cut(s) 490, 576, 614, 902, 1175, 1237, 1258, 1420
Alw21I GWGCWC 1 cut(s) 689
Alw26I GTCTC 3 cut(s) 66, 692, 807
Alw44I GTGCAC 1 cut(s) 685
AlwI GGATC 6 cut(s) 345, 358, 473, 486, 827, 840
AlwNI CAGNNNCTG 2 cut(s) 902, 1085
Ama87I CYCGRG 1 cut(s) 375
AoxI GGCC 4 cut(s) 39, 547, 870, 1012
ApaLI GTGCAC 1 cut(s) 685
ApeKI GCWGC 4 cut(s) 7, 10, 611, 1193
ApoI RAATTY 5 cut(s) 438, 717, 821, 1051, 1410
Asp700I GAANNNNTTC 3 cut(s) 717, 903, 1410
Asp718I GGTACC 1 cut(s) 1217
AspS9I GGNCC 2 cut(s) 548, 871
AsuC2I CCSGG 2 cut(s) 1095, 1472
AsuHPI GGTGA 7 cut(s) 278, 314, 427, 446, 622, 1018, 1463
AsuNHI GCTAGC 1 cut(s) 572
AvaI CYCGRG 1 cut(s) 375
BaeGI GKGCMC 3 cut(s) 405, 689, 1114
BalI TGGCCA 1 cut(s) 1014
BamHI GGATCC 3 cut(s) 350, 478, 832
BanI GGYRCC 3 cut(s) 371, 1109, 1217
BbsI GAAGAC 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 689
BbvI GCAGC 3 cut(s) 22, 623, 1180
BccI CCATC 4 cut(s) 236, 413, 1199, 1300
BceAI ACGGC 1 cut(s) 195
BciT130I CCWGG 2 cut(s) 495, 891
BciVI GTATCC 1 cut(s) 559
BclI TGATCA 2 cut(s) 526, 862
BcnI CCSGG 2 cut(s) 1095, 1472
BcoDI GTCTC 3 cut(s) 66, 692, 807
BfaI CTAG 4 cut(s) 543, 573, 944, 993
BfmI CTRYAG 2 cut(s) 8, 131
BfuI GTATCC 1 cut(s) 559
BisI GCNGC 5 cut(s) 8, 11, 47, 612, 1194
BlpI GCTNAGC 1 cut(s) 999
BlsI GCNGC 5 cut(s) 9, 12, 48, 613, 1195
Bme1390I CCNGG 4 cut(s) 495, 891, 1095, 1472
BmeRI GACNNNNNGTC 1 cut(s) 1472
BmeT110I CYCGRG 1 cut(s) 375
BmgT120I GGNCC 2 cut(s) 548, 871
BmiI GGNNCC 7 cut(s) 352, 373, 480, 654, 834, 1111, 1219
BmrFI CCNGG 4 cut(s) 495, 891, 1095, 1472
BmsI GCATC 1 cut(s) 832
BmtI GCTAGC 1 cut(s) 576
BpiI GAAGAC 1 cut(s) 78
BpmI CTGGAG 1 cut(s) 184
Bpu10I CCTNAGC 1 cut(s) 1238
Bpu1102I GCTNAGC 1 cut(s) 999
BpuEI CTTGAG 2 cut(s) 831, 1280
BpuMI CCSGG 2 cut(s) 1095, 1472
BsaBI GATNNNNATC 2 cut(s) 477, 861
BsaJI CCNNGG 5 cut(s) 65, 229, 376, 482, 1226
BsaXI ACNNNNNCTCC 2 cut(s) 649, 679
Bse1I ACTGG 1 cut(s) 523
Bse3DI GCAATG 1 cut(s) 927
Bse8I GATNNNNATC 2 cut(s) 477, 861
BseBI CCWGG 2 cut(s) 495, 891
BseDI CCNNGG 5 cut(s) 65, 229, 376, 482, 1226
BseGI GGATG 1 cut(s) 1210
BseJI GATNNNNATC 2 cut(s) 477, 861
BseMI GCAATG 1 cut(s) 927
BseMII CTCAG 4 cut(s) 108, 639, 726, 889
BseNI ACTGG 1 cut(s) 523
BseRI GAGGAG 1 cut(s) 393
BseSI GKGCMC 3 cut(s) 405, 689, 1114
BseXI GCAGC 3 cut(s) 22, 623, 1180
BshFI GGCC 4 cut(s) 41, 549, 872, 1014
BshNI GGYRCC 3 cut(s) 371, 1109, 1217
BsiHKAI GWGCWC 1 cut(s) 689
BsiHKCI CYCGRG 1 cut(s) 375
BsiSI CCGG 3 cut(s) 1094, 1197, 1471
BslFI GGGAC 5 cut(s) 314, 357, 797, 1110, 1342
BsmAI GTCTC 3 cut(s) 66, 692, 807
BsmFI GGGAC 5 cut(s) 314, 357, 797, 1110, 1342
BsmI GAATGC 3 cut(s) 532, 957, 1139
BsnI GGCC 4 cut(s) 41, 549, 872, 1014
BsoBI CYCGRG 1 cut(s) 375
Bsp1286I GDGCHC 3 cut(s) 405, 689, 1114
Bsp143I GATC 7 cut(s) 223, 350, 478, 526, 832, 862, 1285
Bsp1720I GCTNAGC 1 cut(s) 999
Bsp19I CCATGG 3 cut(s) 65, 229, 482
BspACI CCGC 5 cut(s) 46, 104, 309, 383, 779
BspANI GGCC 4 cut(s) 41, 549, 872, 1014
BspCNI CTCAG 4 cut(s) 107, 640, 727, 888
BspLI GGNNCC 7 cut(s) 352, 373, 480, 654, 834, 1111, 1219
BspMAI CTGCAG 1 cut(s) 12
BspOI GCTAGC 1 cut(s) 576
BspPI GGATC 6 cut(s) 345, 358, 473, 486, 827, 840
BspT107I GGYRCC 3 cut(s) 371, 1109, 1217
BsrBI CCGCTC 2 cut(s) 383, 779
BsrDI GCAATG 1 cut(s) 927
BsrI ACTGG 1 cut(s) 523
BssECI CCNNGG 5 cut(s) 65, 229, 376, 482, 1226
BssMI GATC 7 cut(s) 223, 350, 478, 526, 832, 862, 1285
BssT1I CCWWGG 4 cut(s) 65, 229, 482, 1226
Bst2UI CCWGG 2 cut(s) 495, 891
Bst4CI ACNGT 6 cut(s) 24, 295, 415, 745, 1081, 1451
Bst6I CTCTTC 1 cut(s) 253
BstAPI GCANNNNNTGC 1 cut(s) 195
BstC8I GCNNGC 3 cut(s) 15, 574, 1005
BstDSI CCRYGG 3 cut(s) 65, 229, 482
BstF5I GGATG 1 cut(s) 1210
BstKTI GATC 7 cut(s) 226, 353, 481, 529, 835, 865, 1288
BstMAI GTCTC 3 cut(s) 66, 692, 807
BstMBI GATC 7 cut(s) 223, 350, 478, 526, 832, 862, 1285
BstMWI GCNNNNNNNGC 6 cut(s) 195, 216, 225, 776, 878, 1004
BstNI CCWGG 2 cut(s) 495, 891
BstNSI RCATGY 1 cut(s) 1139
BstSCI CCNGG 4 cut(s) 493, 889, 1093, 1470
BstSFI CTRYAG 2 cut(s) 8, 131
BstSLI GKGCMC 3 cut(s) 405, 689, 1114
BstV1I GCAGC 3 cut(s) 22, 623, 1180
BstV2I GAAGAC 1 cut(s) 78
BstX2I RGATCY 3 cut(s) 350, 478, 832
BstYI RGATCY 3 cut(s) 350, 478, 832
BsuI GTATCC 1 cut(s) 559
BsuRI GGCC 4 cut(s) 41, 549, 872, 1014
BtgI CCRYGG 3 cut(s) 65, 229, 482
BtsCI GGATG 1 cut(s) 1210
BtsI GCAGTG 3 cut(s) 56, 196, 567
BtsIMutI CAGTG 5 cut(s) 56, 196, 567, 645, 883
Cac8I GCNNGC 3 cut(s) 15, 574, 1005
CaiI CAGNNNCTG 2 cut(s) 902, 1085
Cfr13I GGNCC 2 cut(s) 548, 871
Csp6I GTAC 5 cut(s) 411, 498, 972, 1218, 1364
CviQI GTAC 5 cut(s) 411, 498, 972, 1218, 1364
DpnI GATC 7 cut(s) 225, 352, 480, 528, 834, 864, 1287
DpnII GATC 7 cut(s) 223, 350, 478, 526, 832, 862, 1285
DraI TTTAAA 2 cut(s) 826, 1056
DriI GACNNNNNGTC 1 cut(s) 1472
EaeI YGGCCR 1 cut(s) 1012
Eam1104I CTCTTC 1 cut(s) 253
Eam1105I GACNNNNNGTC 1 cut(s) 1472
EarI CTCTTC 1 cut(s) 253
Eco130I CCWWGG 4 cut(s) 65, 229, 482, 1226
Eco147I AGGCCT 1 cut(s) 41
Eco57I CTGAAG 2 cut(s) 289, 1353
Eco88I CYCGRG 1 cut(s) 375
EcoRI GAATTC 1 cut(s) 1410
EcoRII CCWGG 2 cut(s) 493, 889
EcoT14I CCWWGG 4 cut(s) 65, 229, 482, 1226
EcoT22I ATGCAT 1 cut(s) 1141
ErhI CCWWGG 4 cut(s) 65, 229, 482, 1226
FaqI GGGAC 5 cut(s) 314, 357, 797, 1110, 1342
FbaI TGATCA 2 cut(s) 526, 862
Fnu4HI GCNGC 5 cut(s) 8, 11, 47, 612, 1194
FokI GGATG 1 cut(s) 1217
Fsp4HI GCNGC 5 cut(s) 8, 11, 47, 612, 1194
FspBI CTAG 4 cut(s) 543, 573, 944, 993
GluI GCNGC 5 cut(s) 8, 11, 47, 612, 1194
GsuI CTGGAG 1 cut(s) 184
HaeIII GGCC 4 cut(s) 41, 549, 872, 1014
HapII CCGG 3 cut(s) 1094, 1197, 1471
HincII GTYRAC 2 cut(s) 741, 755
HindII GTYRAC 2 cut(s) 741, 755
HinfI GANTC 6 cut(s) 98, 418, 641, 1098, 1120, 1467
HpaI GTTAAC 1 cut(s) 741
HpaII CCGG 3 cut(s) 1094, 1197, 1471
HphI GGTGA 7 cut(s) 278, 314, 427, 446, 622, 1018, 1463
Hpy166II GTNNAC 5 cut(s) 687, 741, 755, 1186, 1447
Hpy188I TCNGA 5 cut(s) 97, 526, 856, 898, 1285
Hpy188III TCNNGA 1 cut(s) 1415
Hpy8I GTNNAC 5 cut(s) 687, 741, 755, 1186, 1447
HpyAV CCTTC 8 cut(s) 424, 681, 776, 1033, 1319, 1328, 1353, 1400
HpyCH4III ACNGT 6 cut(s) 24, 295, 415, 745, 1081, 1451
HpyCH4IV ACGT 1 cut(s) 729
HpyCH4V TGCA 6 cut(s) 10, 17, 316, 687, 1139, 1342
HpyF10VI GCNNNNNNNGC 6 cut(s) 195, 216, 225, 776, 878, 1004
HpySE526I ACGT 1 cut(s) 729
KpnI GGTACC 1 cut(s) 1221
Ksp22I TGATCA 2 cut(s) 526, 862
KspAI GTTAAC 1 cut(s) 741
Kzo9I GATC 7 cut(s) 223, 350, 478, 526, 832, 862, 1285
LmnI GCTCC 4 cut(s) 203, 380, 487, 776
Lsp1109I GCAGC 3 cut(s) 22, 623, 1180
LweI GCATC 1 cut(s) 832
MaeI CTAG 4 cut(s) 543, 573, 944, 993
MaeII ACGT 1 cut(s) 729
MaeIII GTNAC 2 cut(s) 514, 1148
MalI GATC 7 cut(s) 225, 352, 480, 528, 834, 864, 1287
MbiI CCGCTC 2 cut(s) 383, 779
MboI GATC 7 cut(s) 223, 350, 478, 526, 832, 862, 1285
MboII GAAGA 8 cut(s) 78, 130, 270, 370, 704, 719, 722, 1358
MflI RGATCY 3 cut(s) 350, 478, 832
MhlI GDGCHC 3 cut(s) 405, 689, 1114
MlsI TGGCCA 1 cut(s) 1014
MluNI TGGCCA 1 cut(s) 1014
MlyI GAGTC 2 cut(s) 1092, 1461
Mox20I TGGCCA 1 cut(s) 1014
Mph1103I ATGCAT 1 cut(s) 1141
MroXI GAANNNNTTC 3 cut(s) 717, 903, 1410
MscI TGGCCA 1 cut(s) 1014
MseI TTAA 4 cut(s) 740, 825, 1055, 1495
Msp20I TGGCCA 1 cut(s) 1014
MspA1I CMGCKG 1 cut(s) 309
MspI CCGG 3 cut(s) 1094, 1197, 1471
MspR9I CCNGG 4 cut(s) 495, 891, 1095, 1472
Mva1269I GAATGC 3 cut(s) 532, 957, 1139
MvaI CCWGG 2 cut(s) 495, 891
MwoI GCNNNNNNNGC 6 cut(s) 195, 216, 225, 776, 878, 1004
NciI CCSGG 2 cut(s) 1095, 1472
NcoI CCATGG 3 cut(s) 65, 229, 482
NdeII GATC 7 cut(s) 223, 350, 478, 526, 832, 862, 1285
NheI GCTAGC 1 cut(s) 572
NlaIV GGNNCC 7 cut(s) 352, 373, 480, 654, 834, 1111, 1219
NmuCI GTSAC 1 cut(s) 1148
NsiI ATGCAT 1 cut(s) 1141
NspI RCATGY 1 cut(s) 1139
PceI AGGCCT 1 cut(s) 41
PctI GAATGC 3 cut(s) 532, 957, 1139
PdmI GAANNNNTTC 3 cut(s) 717, 903, 1410
PfeI GAWTC 4 cut(s) 98, 418, 641, 1120
PflMI CCANNNNNTGG 1 cut(s) 962
PfoI TCCNGGA 1 cut(s) 1093
PkrI GCNGC 5 cut(s) 9, 12, 48, 613, 1195
PleI GAGTC 2 cut(s) 1092, 1461
PpsI GAGTC 2 cut(s) 1092, 1461
Psp1406I AACGTT 1 cut(s) 729
Psp6I CCWGG 2 cut(s) 493, 889
PspGI CCWGG 2 cut(s) 493, 889
PspN4I GGNNCC 7 cut(s) 352, 373, 480, 654, 834, 1111, 1219
PspPI GGNCC 2 cut(s) 548, 871
PsrI GAACNNNNNNTAC 4 cut(s) 877, 909, 1356, 1388
PstI CTGCAG 1 cut(s) 12
PstNI CAGNNNCTG 2 cut(s) 902, 1085
PsuI RGATCY 3 cut(s) 350, 478, 832
RsaI GTAC 5 cut(s) 412, 499, 973, 1219, 1365
RsaNI GTAC 5 cut(s) 411, 498, 972, 1218, 1364
SaqAI TTAA 4 cut(s) 740, 825, 1055, 1495
SatI GCNGC 5 cut(s) 8, 11, 47, 612, 1194
Sau3AI GATC 7 cut(s) 223, 350, 478, 526, 832, 862, 1285
Sau96I GGNCC 2 cut(s) 548, 871
SchI GAGTC 2 cut(s) 1092, 1461
ScrFI CCNGG 4 cut(s) 495, 891, 1095, 1472
SduI GDGCHC 3 cut(s) 405, 689, 1114
SfaNI GCATC 1 cut(s) 832
SfcI CTRYAG 2 cut(s) 8, 131
SmlI CTYRAG 2 cut(s) 846, 1259
SmoI CTYRAG 2 cut(s) 846, 1259
SseBI AGGCCT 1 cut(s) 41
SsiI CCGC 5 cut(s) 46, 104, 309, 383, 779
SspMI CTAG 4 cut(s) 543, 573, 944, 993
StuI AGGCCT 1 cut(s) 41
StyD4I CCNGG 4 cut(s) 493, 889, 1093, 1470
StyI CCWWGG 4 cut(s) 65, 229, 482, 1226
TaaI ACNGT 6 cut(s) 24, 295, 415, 745, 1081, 1451
TaiI ACGT 1 cut(s) 732
TaqI TCGA 6 cut(s) 356, 586, 1123, 1210, 1288, 1476
TauI GCSGC 1 cut(s) 49
TfiI GAWTC 4 cut(s) 98, 418, 641, 1120
Tru1I TTAA 4 cut(s) 740, 825, 1055, 1495
Tru9I TTAA 4 cut(s) 740, 825, 1055, 1495
TscAI CASTG 5 cut(s) 56, 196, 567, 652, 883
TseFI GTSAC 1 cut(s) 1148
TseI GCWGC 4 cut(s) 7, 10, 611, 1193
Tsp45I GTSAC 1 cut(s) 1148
TspDTI ATGAA 3 cut(s) 410, 443, 1359
TspGWI ACGGA 3 cut(s) 825, 845, 1136
TspRI CASTG 5 cut(s) 56, 196, 567, 652, 883
Van91I CCANNNNNTGG 1 cut(s) 962
VneI GTGCAC 1 cut(s) 685
XapI RAATTY 5 cut(s) 438, 717, 821, 1051, 1410
XceI RCATGY 1 cut(s) 1139
XcmI CCANNNNNNNNNTGG 1 cut(s) 227
XmnI GAANNNNTTC 3 cut(s) 717, 903, 1410
XspI CTAG 4 cut(s) 543, 573, 944, 993
Zsp2I ATGCAT 1 cut(s) 1141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.