Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002775

Physical Location & Seq

Genomic Coordinates Forward (+)

72189107 .. 72191059

Gene Structure 1953 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG452100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1503 bp

ATGTGGGTGCAGCGTGCAAAACCATTTAGGCAGATAAAGGCCTTGAGTCAGTCTTTTAAGTCTCCATGGATTTTTTCGATATCGTCTTCCTACTCGGATACTCCTCACAAGAAGTCGAAGCTTGCCCCTCTACAGGAAAGGAAAATGATAGACAGGTTTAGGCTATATGCTAAAGGGGGCGGTGGTGGCAGTGGTTGTTCCAGCTCTCGCCGTAGTCGCCATGACCGCCATGGCATACCTGATGGTGGGAATGGTGGAAGAGGTGGTGATGTGATTTTGGAATGTTCTCCAACAGTTTGGGACTTCAGCGGTTTGCAACCTCACCTTATAGCACAGAGAGGGGGACATGGATCCTCGAAGAATAAAATTGGCACCCGAGGAGAGGATAAGGTTGCCCAAGTGCCCATTGGTACAGTGATTCATCTTATGCAGGGTGAAATTCCTTTTGTTGCTGAAAGCCATGTTTCTAAAGATTTGGATCCATGGGAGCTTCCAGGTACTCCTATTGATGATGTAACTGGCTCTGACCAGCAATCTGCCCCTAGTGGTCCAAATATGGCAGTGGATACTAGGGGTAGCTCATCATCTCGACCTGAAAGAATTATTGAGGAATCAGCTCACATGAAGGAAATCTCCCAAGTTGAATCCACTGAGGTTCCTACTCAATCTCCACCTTATTTGTCTGAGATTTGCACAGAAGACAAGACAGAGGAAGAAGAACAAATGCAATACAACGTTGCTGAGTTAACAGTAAGAGGTCAACGACTAGTTATTGCTCGTGGAGCGGAAGGTGGTCTAGGTAGCGTGTCTCTCAAAGTCCCAAGGAAGTTCAAAACTGATTCGTTAGATGCTCAAGTATCTGATGATGATCAGTTGACCCTCGGTGCTGGTTTGCCTGGTTCTGAAGCTGTTCTCATATTAGAGCTAAAGAGCATTGCTGATGTGAGCCTAGTGGGAATGCCGAATGCTGGTAAAAGTACTCTATTAGGGGCTATATCTAGGGCTAAGCCTGCAGTGGGCCATTACGCCTTCACCACTCTTAGACCCAATTTGGGGAACCTAAACTTTGATGACTTTTCACTCACGGTTGCTGATGTTCCGGGACTCATAAAGGGTGCCCATGAGAATCGTGGACTTGGACATGCATTCCTTCGCCATATAGAACGCACAAAGGTTATAGCTTATGTGGTGGACTTGGCTGCTGGATTGGATGGTCGAAAAGGAACCCCACCTTGGGAACAGCTTAGAGATTTGGTCTTAGAGCTTGAGTACCATCAAGTGGGTTTATCTGATCGACCATCACTCATAGTGGCAAATAAAATAGATGAGGAAGGGACTGAAGGCGTGCATGAAGAACTGAAAAGAAGGGTGCAAGATGTTCCTATATTCCCTGTCTGTGCTATTTTGGGGGAAGGAATTCAAGAGCTAAAGATTGGTCTTAGGAAACTTGTGAATGGTGAAATGACAGACAGACTTCAGGTCGATAAAATTATGGTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GTP1_OBG MMR_HSR1

Protein Analysis

500

Amino Acids

54.32

Weight (kDa)

6.01

Isoelectric Point (pI)

47.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP1_OBG	PF01018	50 - 142	1.4e-24	GTP1/OBG
MMR_HSR1	PF01926	315 - 440	5.6e-23	50S ribosome-binding GTPase
FeoB_N	PF02421	315 - 477	2.8e-10	Ferrous iron transport protein B
Arf	PF00025	315 - 476	3.5e-06	ADP-ribosylation factor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07615
fragaria_vesca	FvH4_3g36011 FvH4_3g36011 FvH4_3g36011 FvH4_3g36011 FvH4_3g36011 FvH4_3g36011
malus_domestica	MD03G1094400.v1.1 MD11G1109500.v1.1
prunus_persica	Prupe.6G078100_v2.0.a1 Prupe.6G078100_v2.0.a1 Prupe.6G078100_v2.0.a1 Prupe.6G078100_v2.0.a1 Prupe.6G078100_v2.0.a1 Prupe.6G078100_v2.0.a1 Prupe.6G078100_v2.0.a1
pyrus_communis	pycom03g07680
rosa_chinensis	RchiOBHm_Chr2g0137651 RchiOBHm_Chr5g0064441
rosa_laevigata	RLG00000019666 RLG00000035724
rosa_multiflora	Rmu_co8264625.1_g000001 Rmu_sc0000765.1_g000032 Rmu_sc0001125.1_g000005 Rmu_sc0006937.1_g000009
rosa_roxburghii	Rroxscaffold_1G00016560 Rroxscaffold_2G00106970
rosa_rugosa	Rorug02G0343800 Rorug05G0365000
rosa_samantha	Rh2AG391600 Rh2BG399100 Rh2CG378500 Rh2DG414100 Rh5AG423300 Rh5BG438800 Rh5CG461500 Rh5DG452100
rosa_wichuraiana	Rw2G032080 Rw5G039790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	371, 1115
AccB7I	CCANNNNNTGG	1 cut(s)	1279
AccBSI	CCGCTC	1 cut(s)	785
AciI	CCGC	4 cut(s)	180, 226, 309, 785
AclI	AACGTT	1 cut(s)	735
AclWI	GGATC	4 cut(s)	345, 358, 473, 486
AcsI	RAATTY	2 cut(s)	438, 1416
AcuI	CTGAAG	4 cut(s)	289, 924, 1359, 1460
AfaI	GTAC	4 cut(s)	412, 499, 979, 1271
AgsI	TTSAA	3 cut(s)	644, 832, 1421
AhdI	GACNNNNNGTC	1 cut(s)	1478
AhlI	ACTAGT	1 cut(s)	766
AjnI	CCWGG	2 cut(s)	493, 895
AjuI	GAANNNNNNNTTGG	2 cut(s)	1216, 1248
Alw26I	GTCTC	2 cut(s)	66, 813
AlwI	GGATC	4 cut(s)	345, 358, 473, 486
Ama87I	CYCGRG	1 cut(s)	375
AoxI	GGCC	2 cut(s)	39, 1018
ApeKI	GCWGC	2 cut(s)	10, 1199
ApoI	RAATTY	2 cut(s)	438, 1416
Asp700I	GAANNNNTTC	2 cut(s)	909, 1416
AspS9I	GGNCC	2 cut(s)	548, 1018
AsuC2I	CCSGG	1 cut(s)	1101
AsuHPI	GGTGA	5 cut(s)	278, 314, 446, 1024, 1469
AvaI	CYCGRG	1 cut(s)	375
AvaII	GGWCC	1 cut(s)	548
BaeGI	GKGCMC	2 cut(s)	405, 1120
BamHI	GGATCC	2 cut(s)	350, 478
BanI	GGYRCC	2 cut(s)	371, 1115
BauI	CACGAG	1 cut(s)	777
BbsI	GAAGAC	2 cut(s)	78, 705
BbvI	GCAGC	2 cut(s)	22, 1186
BccI	CCATC	4 cut(s)	236, 1205, 1281, 1306
BceAI	ACGGC	1 cut(s)	195
BciT130I	CCWGG	2 cut(s)	495, 897
BciVI	GTATCC	2 cut(s)	91, 559
BclI	TGATCA	1 cut(s)	868
BcnI	CCSGG	1 cut(s)	1101
BcoDI	GTCTC	2 cut(s)	66, 813
BcuI	ACTAGT	1 cut(s)	766
BfaI	CTAG	6 cut(s)	543, 570, 767, 797, 950, 999
BfmI	CTRYAG	2 cut(s)	131, 1011
BfuI	GTATCC	2 cut(s)	91, 559
BisI	GCNGC	2 cut(s)	11, 1200
BlpI	GCTNAGC	1 cut(s)	1005
BlsI	GCNGC	2 cut(s)	12, 1201
BmcAI	AGTACT	1 cut(s)	979
Bme1390I	CCNGG	3 cut(s)	495, 897, 1101
Bme18I	GGWCC	1 cut(s)	548
BmeRI	GACNNNNNGTC	1 cut(s)	1478
BmeT110I	CYCGRG	1 cut(s)	375
BmgT120I	GGNCC	2 cut(s)	548, 1018
BmiI	GGNNCC	7 cut(s)	352, 373, 480, 657, 1058, 1117, 1225
BmrFI	CCNGG	3 cut(s)	495, 897, 1101
BmsI	GCATC	1 cut(s)	838
BpiI	GAAGAC	2 cut(s)	78, 705
Bpu1102I	GCTNAGC	1 cut(s)	1005
BpuEI	CTTGAG	3 cut(s)	64, 837, 1286
BpuMI	CCSGG	1 cut(s)	1101
BsaBI	GATNNNNATC	2 cut(s)	477, 867
BsaJI	CCNNGG	7 cut(s)	65, 229, 376, 482, 821, 880, 1232
BsaXI	ACNNNNNCTCC	2 cut(s)	652, 682
Bse1I	ACTGG	1 cut(s)	523
Bse3DI	GCAATG	1 cut(s)	933
Bse8I	GATNNNNATC	2 cut(s)	477, 867
BseBI	CCWGG	2 cut(s)	495, 897
BseDI	CCNNGG	7 cut(s)	65, 229, 376, 482, 821, 880, 1232
BseGI	GGATG	1 cut(s)	1216
BseJI	GATNNNNATC	2 cut(s)	477, 867
BseMI	GCAATG	1 cut(s)	933
BseMII	CTCAG	3 cut(s)	642, 675, 732
BseNI	ACTGG	1 cut(s)	523
BseRI	GAGGAG	2 cut(s)	93, 393
BseSI	GKGCMC	2 cut(s)	405, 1120
BseXI	GCAGC	2 cut(s)	22, 1186
BsgI	GTGCAG	1 cut(s)	29
BshFI	GGCC	2 cut(s)	41, 1020
BshNI	GGYRCC	2 cut(s)	371, 1115
BsiHKCI	CYCGRG	1 cut(s)	375
BsiSI	CCGG	1 cut(s)	1100
BslFI	GGGAC	5 cut(s)	314, 357, 803, 1116, 1348
BsmAI	GTCTC	2 cut(s)	66, 813
BsmFI	GGGAC	5 cut(s)	314, 357, 803, 1116, 1348
BsmI	GAATGC	3 cut(s)	963, 970, 1145
BsnI	GGCC	2 cut(s)	41, 1020
BsoBI	CYCGRG	1 cut(s)	375
Bsp1286I	GDGCHC	2 cut(s)	405, 1120
Bsp143I	GATC	4 cut(s)	350, 478, 868, 1291
Bsp1720I	GCTNAGC	1 cut(s)	1005
Bsp19I	CCATGG	3 cut(s)	65, 229, 482
BspACI	CCGC	4 cut(s)	180, 226, 309, 785
BspANI	GGCC	2 cut(s)	41, 1020
BspCNI	CTCAG	3 cut(s)	643, 676, 733
BspLI	GGNNCC	7 cut(s)	352, 373, 480, 657, 1058, 1117, 1225
BspMAI	CTGCAG	1 cut(s)	1015
BspPI	GGATC	4 cut(s)	345, 358, 473, 486
BspT107I	GGYRCC	2 cut(s)	371, 1115
BsrBI	CCGCTC	1 cut(s)	785
BsrDI	GCAATG	1 cut(s)	933
BsrI	ACTGG	1 cut(s)	523
BssECI	CCNNGG	7 cut(s)	65, 229, 376, 482, 821, 880, 1232
BssMI	GATC	4 cut(s)	350, 478, 868, 1291
BssSI	CACGAG	1 cut(s)	777
BssT1I	CCWWGG	5 cut(s)	65, 229, 482, 821, 1232
Bst2BI	CACGAG	1 cut(s)	777
Bst2UI	CCWGG	2 cut(s)	495, 897
Bst4CI	ACNGT	4 cut(s)	295, 415, 751, 1087
Bst6I	CTCTTC	1 cut(s)	253
BstC8I	GCNNGC	4 cut(s)	15, 123, 1011, 1346
BstDEI	CTNAG	8 cut(s)	651, 684, 741, 1005, 1040, 1244, 1258, 1439
BstDSI	CCRYGG	3 cut(s)	65, 229, 482
BstF5I	GGATG	1 cut(s)	1216
BstKTI	GATC	4 cut(s)	353, 481, 871, 1294
BstMAI	GTCTC	2 cut(s)	66, 813
BstMBI	GATC	4 cut(s)	350, 478, 868, 1291
BstMWI	GCNNNNNNNGC	5 cut(s)	186, 216, 225, 782, 1010
BstNI	CCWGG	2 cut(s)	495, 897
BstNSI	RCATGY	1 cut(s)	1145
BstSCI	CCNGG	3 cut(s)	493, 895, 1099
BstSFI	CTRYAG	2 cut(s)	131, 1011
BstSLI	GKGCMC	2 cut(s)	405, 1120
BstV1I	GCAGC	2 cut(s)	22, 1186
BstV2I	GAAGAC	2 cut(s)	78, 705
BstX2I	RGATCY	2 cut(s)	350, 478
BstXI	CCANNNNNNTGG	1 cut(s)	297
BstYI	RGATCY	2 cut(s)	350, 478
BsuI	GTATCC	2 cut(s)	91, 559
BsuRI	GGCC	2 cut(s)	41, 1020
BtgI	CCRYGG	3 cut(s)	65, 229, 482
BtsCI	GGATG	1 cut(s)	1216
BtsI	GCAGTG	3 cut(s)	196, 567, 1020
BtsIMutI	CAGTG	5 cut(s)	196, 420, 567, 648, 1020
Cac8I	GCNNGC	4 cut(s)	15, 123, 1011, 1346
Cfr13I	GGNCC	2 cut(s)	548, 1018
Csp6I	GTAC	4 cut(s)	411, 498, 978, 1270
CspCI	CAANNNNNGTGG	2 cut(s)	660, 695
CviQI	GTAC	4 cut(s)	411, 498, 978, 1270
DdeI	CTNAG	8 cut(s)	651, 684, 741, 1005, 1040, 1244, 1258, 1439
DpnI	GATC	4 cut(s)	352, 480, 870, 1293
DpnII	GATC	4 cut(s)	350, 478, 868, 1291
DriI	GACNNNNNGTC	1 cut(s)	1478
Eam1104I	CTCTTC	1 cut(s)	253
Eam1105I	GACNNNNNGTC	1 cut(s)	1478
EarI	CTCTTC	1 cut(s)	253
Eco130I	CCWWGG	5 cut(s)	65, 229, 482, 821, 1232
Eco147I	AGGCCT	1 cut(s)	41
Eco32I	GATATC	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	548
Eco57I	CTGAAG	4 cut(s)	289, 924, 1359, 1460
Eco88I	CYCGRG	1 cut(s)	375
EcoRI	GAATTC	1 cut(s)	1416
EcoRII	CCWGG	2 cut(s)	493, 895
EcoRV	GATATC	1 cut(s)	81
EcoT14I	CCWWGG	5 cut(s)	65, 229, 482, 821, 1232
EcoT22I	ATGCAT	1 cut(s)	1147
ErhI	CCWWGG	5 cut(s)	65, 229, 482, 821, 1232
FaqI	GGGAC	5 cut(s)	314, 357, 803, 1116, 1348
FbaI	TGATCA	1 cut(s)	868
Fnu4HI	GCNGC	2 cut(s)	11, 1200
FokI	GGATG	1 cut(s)	1223
Fsp4HI	GCNGC	2 cut(s)	11, 1200
FspBI	CTAG	6 cut(s)	543, 570, 767, 797, 950, 999
GluI	GCNGC	2 cut(s)	11, 1200
HaeIII	GGCC	2 cut(s)	41, 1020
HapII	CCGG	1 cut(s)	1100
HincII	GTYRAC	3 cut(s)	747, 761, 876
HindII	GTYRAC	3 cut(s)	747, 761, 876
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	7 cut(s)	46, 418, 611, 644, 839, 1104, 1126
HpaI	GTTAAC	1 cut(s)	747
HpaII	CCGG	1 cut(s)	1100
HphI	GGTGA	5 cut(s)	278, 314, 446, 1024, 1469
Hpy166II	GTNNAC	5 cut(s)	747, 761, 876, 1133, 1192
Hpy188I	TCNGA	6 cut(s)	97, 526, 685, 862, 904, 1291
Hpy188III	TCNNGA	2 cut(s)	588, 1421
Hpy8I	GTNNAC	5 cut(s)	747, 761, 876, 1133, 1192
HpyAV	CCTTC	8 cut(s)	619, 782, 1039, 1160, 1325, 1334, 1359, 1406
HpyCH4III	ACNGT	4 cut(s)	295, 415, 751, 1087
HpyCH4IV	ACGT	1 cut(s)	735
HpyF10VI	GCNNNNNNNGC	5 cut(s)	186, 216, 225, 782, 1010
HpyF3I	CTNAG	8 cut(s)	651, 684, 741, 1005, 1040, 1244, 1258, 1439
HpySE526I	ACGT	1 cut(s)	735
Ksp22I	TGATCA	1 cut(s)	868
KspAI	GTTAAC	1 cut(s)	747
Kzo9I	GATC	4 cut(s)	350, 478, 868, 1291
LmnI	GCTCC	2 cut(s)	487, 782
Lsp1109I	GCAGC	2 cut(s)	22, 1186
LweI	GCATC	1 cut(s)	838
MaeI	CTAG	6 cut(s)	543, 570, 767, 797, 950, 999
MaeII	ACGT	1 cut(s)	735
MaeIII	GTNAC	1 cut(s)	514
MalI	GATC	4 cut(s)	352, 480, 870, 1293
MbiI	CCGCTC	1 cut(s)	785
MboI	GATC	4 cut(s)	350, 478, 868, 1291
MboII	GAAGA	7 cut(s)	78, 270, 370, 710, 725, 728, 1364
MflI	RGATCY	2 cut(s)	350, 478
MhlI	GDGCHC	2 cut(s)	405, 1120
MluCI	AATT	6 cut(s)	366, 438, 600, 1048, 1416, 1488
MlyI	GAGTC	2 cut(s)	55, 1098
MmeI	TCCRAC	1 cut(s)	314
Mph1103I	ATGCAT	1 cut(s)	1147
MroXI	GAANNNNTTC	2 cut(s)	909, 1416
MseI	TTAA	3 cut(s)	57, 746, 1501
MspA1I	CMGCKG	1 cut(s)	309
MspI	CCGG	1 cut(s)	1100
MspR9I	CCNGG	3 cut(s)	495, 897, 1101
Mva1269I	GAATGC	3 cut(s)	963, 970, 1145
MvaI	CCWGG	2 cut(s)	495, 897
MwoI	GCNNNNNNNGC	5 cut(s)	186, 216, 225, 782, 1010
NciI	CCSGG	1 cut(s)	1101
NcoI	CCATGG	3 cut(s)	65, 229, 482
NdeII	GATC	4 cut(s)	350, 478, 868, 1291
NlaIV	GGNNCC	7 cut(s)	352, 373, 480, 657, 1058, 1117, 1225
NsiI	ATGCAT	1 cut(s)	1147
NspI	RCATGY	1 cut(s)	1145
PceI	AGGCCT	1 cut(s)	41
PctI	GAATGC	3 cut(s)	963, 970, 1145
PdmI	GAANNNNTTC	2 cut(s)	909, 1416
PfeI	GAWTC	5 cut(s)	418, 611, 644, 839, 1126
PflMI	CCANNNNNTGG	1 cut(s)	1279
PfoI	TCCNGGA	1 cut(s)	1099
PkrI	GCNGC	2 cut(s)	12, 1201
PleI	GAGTC	2 cut(s)	54, 1098
PpsI	GAGTC	2 cut(s)	54, 1098
Psp1406I	AACGTT	1 cut(s)	735
Psp6I	CCWGG	2 cut(s)	493, 895
PspGI	CCWGG	2 cut(s)	493, 895
PspN4I	GGNNCC	7 cut(s)	352, 373, 480, 657, 1058, 1117, 1225
PspPI	GGNCC	2 cut(s)	548, 1018
PstI	CTGCAG	1 cut(s)	1015
PsuI	RGATCY	2 cut(s)	350, 478
RsaI	GTAC	4 cut(s)	412, 499, 979, 1271
RsaNI	GTAC	4 cut(s)	411, 498, 978, 1270
SaqAI	TTAA	3 cut(s)	57, 746, 1501
SatI	GCNGC	2 cut(s)	11, 1200
Sau3AI	GATC	4 cut(s)	350, 478, 868, 1291
Sau96I	GGNCC	2 cut(s)	548, 1018
ScaI	AGTACT	1 cut(s)	979
SchI	GAGTC	2 cut(s)	55, 1098
ScrFI	CCNGG	3 cut(s)	495, 897, 1101
SduI	GDGCHC	2 cut(s)	405, 1120
SfaNI	GCATC	1 cut(s)	838
SfcI	CTRYAG	2 cut(s)	131, 1011
SinI	GGWCC	1 cut(s)	548
SmlI	CTYRAG	3 cut(s)	43, 852, 1265
SmoI	CTYRAG	3 cut(s)	43, 852, 1265
SpeI	ACTAGT	1 cut(s)	766
Sse9I	AATT	6 cut(s)	366, 438, 600, 1048, 1416, 1488
SseBI	AGGCCT	1 cut(s)	41
SsiI	CCGC	4 cut(s)	180, 226, 309, 785
SspMI	CTAG	6 cut(s)	543, 570, 767, 797, 950, 999
StuI	AGGCCT	1 cut(s)	41
StyD4I	CCNGG	3 cut(s)	493, 895, 1099
StyI	CCWWGG	5 cut(s)	65, 229, 482, 821, 1232
TaaI	ACNGT	4 cut(s)	295, 415, 751, 1087
TaiI	ACGT	1 cut(s)	738
TaqI	TCGA	7 cut(s)	77, 116, 356, 589, 1216, 1294, 1482
TasI	AATT	6 cut(s)	366, 438, 600, 1048, 1416, 1488
TatI	WGTACW	1 cut(s)	977
TfiI	GAWTC	5 cut(s)	418, 611, 644, 839, 1126
Tru1I	TTAA	3 cut(s)	57, 746, 1501
Tru9I	TTAA	3 cut(s)	57, 746, 1501
TscAI	CASTG	5 cut(s)	196, 420, 567, 655, 1020
TseI	GCWGC	2 cut(s)	10, 1199
TspDTI	ATGAA	3 cut(s)	410, 638, 1365
TspRI	CASTG	5 cut(s)	196, 420, 567, 655, 1020
Van91I	CCANNNNNTGG	1 cut(s)	1279
VpaK11BI	GGWCC	1 cut(s)	548
XapI	RAATTY	2 cut(s)	438, 1416
XceI	RCATGY	1 cut(s)	1145
XcmI	CCANNNNNNNNNTGG	3 cut(s)	227, 404, 1127
XmnI	GAANNNNTTC	2 cut(s)	909, 1416
XspI	CTAG	6 cut(s)	543, 570, 767, 797, 950, 999
ZrmI	AGTACT	1 cut(s)	979
Zsp2I	ATGCAT	1 cut(s)	1147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.