Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002775

Physical Location & Seq

Genomic Coordinates Reverse (-)

5306452 .. 5309683

Gene Structure 3232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G078100.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGCGGGTGCACCTTACAAAATCGCTTTTGCACATAAAGGCCTTGAGGCAGTCTTCCAAGTCTCCATGGCTTTTTTTGTGTTCTTCTTCCTACTGTGATGCTCCTCACAAGAAGTCAAAGCTTGCCCCTCTACAGGAAAGGAGAATGATAGACAGGTTCAGGCTTTATGCTAAAGGTGGTGGTGGTGGCAGTGGTTGCACCAGCACTCGTCGTAGTCGGCATGATCACCGTGGAAGACCTGATGCTAATGTAGGTGGGAATGGTGGAAGAGGTGGTGATGTGATTTTGGAATGTTCCCCAAGAGTTTGGGACTTCAGTGGTTTGCAACCTCACCTTATTGCACAGAGAGGGGGACATGGATCCTCAAAGAATAAAATTGGCACCCGAGGAGCAGATAAGGTTGCCCAAGTGCCCATAGGCACTGTGATTCATATTATGAAGGGTGAAATTCCTTCTGTAGTTGTAAGCCATTTTTCTGAAGATTTGGATCCATGGGAGATTCCAGGTATGCCTATTGGTGATGCAACTGGATCTGACCAGCACTCTGCCCTTACTAGCCTAAATACAGAAGAGGATACTGGCAGCTCATCATCTCAATCTCAAAGAACTGTTGAGGAATCAGCTGGCAAAATCACCCAAGTTGGATCAACTGATATTCATCCTCAATCTTCATCTTCTTCATCTGAGAGTTGCACAGAAGATGAGACAGAGAAAAAAGAACAACTTCAGTTGAATGTTGCTGAATTGACTGTACAAGGTCAACAAATAACTATTGCTCGTGGAGGGGAAGGTGGTTTGGGTAATGTGTCCTCTGTGAAAGTATTTGATGATGAGGAGTCGTCCATTCGTGTTGGTTTGCCTGGTTCTGAAGCTGTTCTTATATTAGAGCTAAAGAGCATTGCTGATGTGAGCCTAGTGGGAATGCCAAATGCCGGTAAAAGCACTCTATTAGGGGCTATATCGAGGGCTAAGCCTGCAGTGGGCCATTATGCCTTCACAACTCTTAGACCCAACTTGGGGAATCTGAACTTTGAGGACTTTTCACTCACAGTTGCTGATGTTCCAGGACTCATCAAGGGTGCACATGAGAATCGTGGACTTGGACATGCATTCCTGCGGCACATAGAACGAACAAAAGTTATAGCTTATGTGGTAGACTTGGCTTCTGCATTGGATGGTAGAAAGGGAACCCCGCCTTGGGAACAGCTTAGGGATTTAGTTTTAGAGCTTGAGTACCATCTAGAGGGTTTATCAAATCGGCCATCCTTGATAGTAGCAAATAAAATAGATGAAGACGGTGCTGAAGAAGTGTATGAAGAATTGAAAAGAAGGGTGCAAGATGTTTCTATATTCCCTGTATGTGCTGTTTTGGAGGAAGGAGTGCCAGAGCTAAAAACTGGTCTTAGGATGCTTGTGAATGGTGAAATTTCAGACAGACTCCATTTAGATAAAATTATGGTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GTP1_OBG MMR_HSR1

Protein Analysis

489

Amino Acids

52.67

Weight (kDa)

6.04

Isoelectric Point (pI)

54.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07615
fragaria_vesca	FvH4_3g36011 FvH4_3g36011 FvH4_3g36011 FvH4_3g36011 FvH4_3g36011 FvH4_3g36011
malus_domestica	MD03G1094400.v1.1 MD11G1109500.v1.1
prunus_persica	Prupe.6G078100_v2.0.a1 Prupe.6G078100_v2.0.a1 Prupe.6G078100_v2.0.a1 Prupe.6G078100_v2.0.a1 Prupe.6G078100_v2.0.a1 Prupe.6G078100_v2.0.a1 Prupe.6G078100_v2.0.a1
pyrus_communis	pycom03g07680
rosa_chinensis	RchiOBHm_Chr2g0137651 RchiOBHm_Chr5g0064441
rosa_laevigata	RLG00000019666 RLG00000035724
rosa_multiflora	Rmu_co8264625.1_g000001 Rmu_sc0000765.1_g000032 Rmu_sc0001125.1_g000005 Rmu_sc0006937.1_g000009
rosa_roxburghii	Rroxscaffold_1G00016560 Rroxscaffold_2G00106970
rosa_rugosa	Rorug02G0343800 Rorug05G0365000
rosa_samantha	Rh2AG391600 Rh2BG399100 Rh2CG378500 Rh2DG414100 Rh5AG423300 Rh5BG438800 Rh5CG461500 Rh5DG452100
rosa_wichuraiana	Rw2G032080 Rw5G039790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	380
AccI	GTMKAC	1 cut(s)	1155
AciI	CCGC	3 cut(s)	4, 1117, 1193
AclWI	GGATC	6 cut(s)	354, 367, 482, 495, 538, 652
AcoI	YGGCCR	1 cut(s)	1259
AcsI	RAATTY	2 cut(s)	447, 1425
AcuI	CTGAAG	5 cut(s)	298, 498, 710, 888, 1323
AfaI	GTAC	2 cut(s)	753, 1235
AfiI	CCNNNNNNNGG	8 cut(s)	133, 932, 980, 1016, 1017, 1197, 1198, 1243
AgsI	TTSAA	2 cut(s)	733, 1324
AjnI	CCWGG	3 cut(s)	502, 859, 1063
AjuI	GAANNNNNNNTTGG	2 cut(s)	1180, 1212
AluBI	AGCT	9 cut(s)	121, 585, 623, 872, 889, 1145, 1207, 1228, 1390
AluI	AGCT	9 cut(s)	121, 585, 623, 872, 889, 1145, 1207, 1228, 1390
Alw21I	GWGCWC	2 cut(s)	12, 1084
Alw26I	GTCTC	2 cut(s)	66, 698
Alw44I	GTGCAC	2 cut(s)	8, 1080
AlwI	GGATC	6 cut(s)	354, 367, 482, 495, 538, 652
AlwNI	CAGNNNCTG	1 cut(s)	1055
Ama87I	CYCGRG	1 cut(s)	384
AoxI	GGCC	3 cut(s)	39, 982, 1259
ApaLI	GTGCAC	2 cut(s)	8, 1080
ApeKI	GCWGC	1 cut(s)	582
ApoI	RAATTY	2 cut(s)	447, 1425
Asp700I	GAANNNNTTC	2 cut(s)	723, 873
AspS9I	GGNCC	1 cut(s)	982
AsuHPI	GGTGA	7 cut(s)	218, 287, 323, 455, 530, 625, 1433
AvaI	CYCGRG	1 cut(s)	384
BaeGI	GKGCMC	3 cut(s)	12, 414, 1084
BamHI	GGATCC	2 cut(s)	359, 487
BanI	GGYRCC	1 cut(s)	380
BauI	CACGAG	1 cut(s)	777
BbsI	GAAGAC	3 cut(s)	45, 241, 1299
Bbv12I	GWGCWC	2 cut(s)	12, 1084
BbvI	GCAGC	1 cut(s)	594
BccI	CCATC	3 cut(s)	1169, 1245, 1270
BciT130I	CCWGG	3 cut(s)	504, 861, 1065
BciVI	GTATCC	1 cut(s)	568
BclI	TGATCA	1 cut(s)	223
BcoDI	GTCTC	2 cut(s)	66, 698
BfaI	CTAG	3 cut(s)	555, 914, 1241
BfmI	CTRYAG	3 cut(s)	131, 456, 975
BfuI	GTATCC	1 cut(s)	568
BisI	GCNGC	2 cut(s)	583, 1118
BlpI	GCTNAGC	1 cut(s)	969
BlsI	GCNGC	2 cut(s)	584, 1119
Bme1390I	CCNGG	3 cut(s)	504, 861, 1065
BmeT110I	CYCGRG	1 cut(s)	384
BmgT120I	GGNCC	1 cut(s)	982
BmiI	GGNNCC	4 cut(s)	361, 382, 489, 1189
BmrFI	CCNGG	3 cut(s)	504, 861, 1065
BmsI	GCATC	4 cut(s)	88, 232, 511, 1398
BpiI	GAAGAC	3 cut(s)	45, 241, 1299
Bpu10I	CCTNAGC	1 cut(s)	1208
Bpu1102I	GCTNAGC	1 cut(s)	969
BpuEI	CTTGAG	2 cut(s)	64, 1250
BsaBI	GATNNNNATC	2 cut(s)	486, 657
BsaJI	CCNNGG	5 cut(s)	65, 229, 385, 491, 1196
Bsc4I	CCNNNNNNNGG	8 cut(s)	133, 932, 980, 1016, 1017, 1197, 1198, 1243
Bse118I	RCCGGY	1 cut(s)	932
Bse1I	ACTGG	3 cut(s)	532, 583, 1402
Bse3DI	GCAATG	1 cut(s)	897
Bse8I	GATNNNNATC	2 cut(s)	486, 657
BseBI	CCWGG	3 cut(s)	504, 861, 1065
BseDI	CCNNGG	5 cut(s)	65, 229, 385, 491, 1196
BseGI	GGATG	4 cut(s)	658, 1180, 1262, 1413
BseJI	GATNNNNATC	2 cut(s)	486, 657
BseLI	CCNNNNNNNGG	8 cut(s)	133, 932, 980, 1016, 1017, 1197, 1198, 1243
BseMI	GCAATG	1 cut(s)	897
BseMII	CTCAG	1 cut(s)	675
BseNI	ACTGG	3 cut(s)	532, 583, 1402
BseRI	GAGGAG	3 cut(s)	93, 402, 848
BseSI	GKGCMC	3 cut(s)	12, 414, 1084
BseXI	GCAGC	1 cut(s)	594
BshFI	GGCC	3 cut(s)	41, 984, 1261
BshNI	GGYRCC	1 cut(s)	380
BsiHKAI	GWGCWC	2 cut(s)	12, 1084
BsiHKCI	CYCGRG	1 cut(s)	384
BsiSI	CCGG	1 cut(s)	933
BslFI	GGGAC	2 cut(s)	323, 366
BslI	CCNNNNNNNGG	8 cut(s)	133, 932, 980, 1016, 1017, 1197, 1198, 1243
BsmAI	GTCTC	2 cut(s)	66, 698
BsmFI	GGGAC	2 cut(s)	323, 366
BsmI	GAATGC	2 cut(s)	927, 1109
BsnI	GGCC	3 cut(s)	41, 984, 1261
BsoBI	CYCGRG	1 cut(s)	384
Bsp1286I	GDGCHC	3 cut(s)	12, 414, 1084
Bsp1407I	TGTACA	1 cut(s)	751
Bsp143I	GATC	5 cut(s)	223, 359, 487, 530, 644
Bsp1720I	GCTNAGC	1 cut(s)	969
Bsp19I	CCATGG	2 cut(s)	65, 491
BspACI	CCGC	3 cut(s)	4, 1117, 1193
BspANI	GGCC	3 cut(s)	41, 984, 1261
BspCNI	CTCAG	1 cut(s)	676
BspLI	GGNNCC	4 cut(s)	361, 382, 489, 1189
BspMAI	CTGCAG	1 cut(s)	979
BspPI	GGATC	6 cut(s)	354, 367, 482, 495, 538, 652
BspT107I	GGYRCC	1 cut(s)	380
BsrDI	GCAATG	1 cut(s)	897
BsrFI	RCCGGY	1 cut(s)	932
BsrGI	TGTACA	1 cut(s)	751
BsrI	ACTGG	3 cut(s)	532, 583, 1402
BssAI	RCCGGY	1 cut(s)	932
BssECI	CCNNGG	5 cut(s)	65, 229, 385, 491, 1196
BssMI	GATC	5 cut(s)	223, 359, 487, 530, 644
BssSI	CACGAG	1 cut(s)	777
BssT1I	CCWWGG	3 cut(s)	65, 491, 1196
Bst2BI	CACGAG	1 cut(s)	777
Bst2UI	CCWGG	3 cut(s)	504, 861, 1065
Bst4CI	ACNGT	7 cut(s)	95, 230, 424, 610, 751, 1051, 1298
Bst6I	CTCTTC	2 cut(s)	262, 564
BstAPI	GCANNNNNTGC	1 cut(s)	195
BstAUI	TGTACA	1 cut(s)	751
BstC8I	GCNNGC	3 cut(s)	123, 625, 975
BstDEI	CTNAG	5 cut(s)	684, 969, 1004, 1208, 1403
BstDSI	CCRYGG	3 cut(s)	65, 229, 491
BstF5I	GGATG	4 cut(s)	658, 1180, 1262, 1413
BstKTI	GATC	5 cut(s)	226, 362, 490, 533, 647
BstMAI	GTCTC	2 cut(s)	66, 698
BstMBI	GATC	5 cut(s)	223, 359, 487, 530, 644
BstMWI	GCNNNNNNNGC	2 cut(s)	195, 974
BstNI	CCWGG	3 cut(s)	504, 861, 1065
BstNSI	RCATGY	1 cut(s)	1109
BstSCI	CCNGG	3 cut(s)	502, 859, 1063
BstSFI	CTRYAG	3 cut(s)	131, 456, 975
BstSLI	GKGCMC	3 cut(s)	12, 414, 1084
BstV1I	GCAGC	1 cut(s)	594
BstV2I	GAAGAC	3 cut(s)	45, 241, 1299
BstX2I	RGATCY	3 cut(s)	359, 487, 530
BstXI	CCANNNNNNTGG	1 cut(s)	306
BstYI	RGATCY	3 cut(s)	359, 487, 530
BsuI	GTATCC	1 cut(s)	568
BsuRI	GGCC	3 cut(s)	41, 984, 1261
BtgI	CCRYGG	3 cut(s)	65, 229, 491
BtsCI	GGATG	4 cut(s)	658, 1180, 1262, 1413
BtsI	GCAGTG	2 cut(s)	196, 984
BtsIMutI	CAGTG	4 cut(s)	196, 322, 420, 984
Cac8I	GCNNGC	3 cut(s)	123, 625, 975
CaiI	CAGNNNCTG	1 cut(s)	1055
Cfr10I	RCCGGY	1 cut(s)	932
Cfr13I	GGNCC	1 cut(s)	982
Csp6I	GTAC	2 cut(s)	752, 1234
CviAII	CATG	6 cut(s)	66, 221, 356, 492, 1085, 1106
CviQI	GTAC	2 cut(s)	752, 1234
DdeI	CTNAG	5 cut(s)	684, 969, 1004, 1208, 1403
DpnI	GATC	5 cut(s)	225, 361, 489, 532, 646
DpnII	GATC	5 cut(s)	223, 359, 487, 530, 644
EaeI	YGGCCR	1 cut(s)	1259
Eam1104I	CTCTTC	2 cut(s)	262, 564
EarI	CTCTTC	2 cut(s)	262, 564
Eco130I	CCWWGG	3 cut(s)	65, 491, 1196
Eco147I	AGGCCT	1 cut(s)	41
Eco57I	CTGAAG	5 cut(s)	298, 498, 710, 888, 1323
Eco88I	CYCGRG	1 cut(s)	384
EcoRII	CCWGG	3 cut(s)	502, 859, 1063
EcoT14I	CCWWGG	3 cut(s)	65, 491, 1196
EcoT22I	ATGCAT	1 cut(s)	1111
ErhI	CCWWGG	3 cut(s)	65, 491, 1196
FaeI	CATG	6 cut(s)	69, 224, 359, 495, 1088, 1109
FalI	AAGNNNNNCTT	4 cut(s)	708, 740, 861, 893
FaqI	GGGAC	2 cut(s)	323, 366
FatI	CATG	6 cut(s)	65, 220, 355, 491, 1084, 1105
FauI	CCCGC	1 cut(s)	1200
FbaI	TGATCA	1 cut(s)	223
FblI	GTMKAC	1 cut(s)	1155
Fnu4HI	GCNGC	2 cut(s)	583, 1118
FokI	GGATG	4 cut(s)	645, 1187, 1249, 1420
Fsp4HI	GCNGC	2 cut(s)	583, 1118
FspBI	CTAG	3 cut(s)	555, 914, 1241
GluI	GCNGC	2 cut(s)	583, 1118
HaeIII	GGCC	3 cut(s)	41, 984, 1261
HapII	CCGG	1 cut(s)	933
Hin1II	CATG	6 cut(s)	69, 224, 359, 495, 1088, 1109
HincII	GTYRAC	2 cut(s)	761, 1462
HindII	GTYRAC	2 cut(s)	761, 1462
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	8 cut(s)	427, 499, 617, 836, 1021, 1068, 1090, 1437
HpaII	CCGG	1 cut(s)	933
HphI	GGTGA	7 cut(s)	218, 287, 323, 455, 530, 625, 1433
Hpy166II	GTNNAC	6 cut(s)	10, 761, 1082, 1097, 1156, 1462
Hpy188I	TCNGA	6 cut(s)	478, 535, 685, 868, 1026, 1432
Hpy188III	TCNNGA	1 cut(s)	1241
Hpy8I	GTNNAC	6 cut(s)	10, 761, 1082, 1097, 1156, 1462
Hpy99I	CGWCG	1 cut(s)	213
HpyAV	CCTTC	6 cut(s)	433, 462, 782, 1003, 1323, 1370
HpyCH4III	ACNGT	7 cut(s)	95, 230, 424, 610, 751, 1051, 1298
HpyF10VI	GCNNNNNNNGC	2 cut(s)	195, 974
HpyF3I	CTNAG	5 cut(s)	684, 969, 1004, 1208, 1403
Hsp92II	CATG	6 cut(s)	69, 224, 359, 495, 1088, 1109
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	5 cut(s)	223, 359, 487, 530, 644
LmnI	GCTCC	2 cut(s)	106, 389
Lsp1109I	GCAGC	1 cut(s)	594
LweI	GCATC	4 cut(s)	88, 232, 511, 1398
MaeI	CTAG	3 cut(s)	555, 914, 1241
MalI	GATC	5 cut(s)	225, 361, 489, 532, 646
MboI	GATC	5 cut(s)	223, 359, 487, 530, 644
MflI	RGATCY	3 cut(s)	359, 487, 530
MhlI	GDGCHC	3 cut(s)	12, 414, 1084
MluCI	AATT	6 cut(s)	375, 447, 743, 1319, 1425, 1452
MlyI	GAGTC	3 cut(s)	845, 1062, 1431
MmeI	TCCRAC	1 cut(s)	622
Mph1103I	ATGCAT	1 cut(s)	1111
MroXI	GAANNNNTTC	2 cut(s)	723, 873
MspA1I	CMGCKG	1 cut(s)	623
MspI	CCGG	1 cut(s)	933
MspR9I	CCNGG	3 cut(s)	504, 861, 1065
Mva1269I	GAATGC	2 cut(s)	927, 1109
MvaI	CCWGG	3 cut(s)	504, 861, 1065
MwoI	GCNNNNNNNGC	2 cut(s)	195, 974
NcoI	CCATGG	2 cut(s)	65, 491
NdeII	GATC	5 cut(s)	223, 359, 487, 530, 644
NlaIII	CATG	6 cut(s)	69, 224, 359, 495, 1088, 1109
NlaIV	GGNNCC	4 cut(s)	361, 382, 489, 1189
NsiI	ATGCAT	1 cut(s)	1111
NspI	RCATGY	1 cut(s)	1109
PceI	AGGCCT	1 cut(s)	41
PctI	GAATGC	2 cut(s)	927, 1109
PdmI	GAANNNNTTC	2 cut(s)	723, 873
PfeI	GAWTC	5 cut(s)	427, 499, 617, 1021, 1090
PfoI	TCCNGGA	1 cut(s)	1063
PkrI	GCNGC	2 cut(s)	584, 1119
PleI	GAGTC	3 cut(s)	844, 1062, 1431
PpsI	GAGTC	3 cut(s)	844, 1062, 1431
Psp6I	CCWGG	3 cut(s)	502, 859, 1063
PspGI	CCWGG	3 cut(s)	502, 859, 1063
PspN4I	GGNNCC	4 cut(s)	361, 382, 489, 1189
PspPI	GGNCC	1 cut(s)	982
PstI	CTGCAG	1 cut(s)	979
PstNI	CAGNNNCTG	1 cut(s)	1055
PsuI	RGATCY	3 cut(s)	359, 487, 530
PvuII	CAGCTG	1 cut(s)	623
RsaI	GTAC	2 cut(s)	753, 1235
RsaNI	GTAC	2 cut(s)	752, 1234
SatI	GCNGC	2 cut(s)	583, 1118
Sau3AI	GATC	5 cut(s)	223, 359, 487, 530, 644
Sau96I	GGNCC	1 cut(s)	982
SchI	GAGTC	3 cut(s)	845, 1062, 1431
ScrFI	CCNGG	3 cut(s)	504, 861, 1065
SduI	GDGCHC	3 cut(s)	12, 414, 1084
SfaNI	GCATC	4 cut(s)	88, 232, 511, 1398
SfcI	CTRYAG	3 cut(s)	131, 456, 975
SmlI	CTYRAG	2 cut(s)	43, 1229
SmoI	CTYRAG	2 cut(s)	43, 1229
Sse9I	AATT	6 cut(s)	375, 447, 743, 1319, 1425, 1452
SseBI	AGGCCT	1 cut(s)	41
SsiI	CCGC	3 cut(s)	4, 1117, 1193
SspMI	CTAG	3 cut(s)	555, 914, 1241
StuI	AGGCCT	1 cut(s)	41
StyD4I	CCNGG	3 cut(s)	502, 859, 1063
StyI	CCWWGG	3 cut(s)	65, 491, 1196
TaaI	ACNGT	7 cut(s)	95, 230, 424, 610, 751, 1051, 1298
TaqI	TCGA	1 cut(s)	962
TasI	AATT	6 cut(s)	375, 447, 743, 1319, 1425, 1452
TatI	WGTACW	1 cut(s)	751
TauI	GCSGC	1 cut(s)	1120
TfiI	GAWTC	5 cut(s)	427, 499, 617, 1021, 1090
TscAI	CASTG	4 cut(s)	196, 322, 427, 984
TseI	GCWGC	1 cut(s)	582
TspDTI	ATGAA	7 cut(s)	419, 452, 647, 660, 669, 1305, 1329
TspRI	CASTG	4 cut(s)	196, 322, 427, 984
VneI	GTGCAC	2 cut(s)	8, 1080
XapI	RAATTY	2 cut(s)	447, 1425
XbaI	TCTAGA	1 cut(s)	1240
XceI	RCATGY	1 cut(s)	1109
XmiI	GTMKAC	1 cut(s)	1155
XmnI	GAANNNNTTC	2 cut(s)	723, 873
XspI	CTAG	3 cut(s)	555, 914, 1241
Zsp2I	ATGCAT	1 cut(s)	1111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.