Rorug05G0365000

GTP-binding protein OBGM, mitochondrial

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002775
Physical Location & Seq
Forward (+)
48594996 .. 48598166
3171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0365000.1

Sequence Viewer

Length: 672 bp
ATGGAGATCAATAGTTCAATTTCGTGCCCTTCAACTCCTTGTTGGATCTCCGAGAGGCCGTTCCTCACCGACAGCTTTCATCAGGTTCCTCCTCCTCATCTTCTCTTTACTCTTTACTTTAACCTCCTCCTCCTCCTCCTCCTCATTTACTTTCCATTTGAAATTTCCGTTCAGTTTGTGCAGAAAACCAAATGGACGTCGCGTTTCGCCACCGATACCAAGGATTCCCATACTGTGGGATTCCAAGATTCCATTGGCTGTTACAATGCTGCTGTTCAGAGGCTTATGTTTAAGCACAAGTTGTACCAGCTAAGGGAAGAGAGGGATATGAAGCCTGAGACTTTTGCTAGCCTTGTCTCAGCTATTATCTATTATCTACGAGAAAAGGCTAAGGCCATGGCTGGTGATACTGCTGTAAGGTCATTGCTAGAAAAGATGGCTGAATGTGCTAGCAATGCGTACCTGGGTATATTAGAGAGGTGGGTATATGAAGGAGTCATTGATGATCCTTACGGTGAATTTTTCATTGCTGAGAACAAATCTCTTCAAAAGTATGATCTGATAGGGAAGCTACGATCTATAAAGCACTATCTTCTTCTTGATCAGGCTTCTCTGGTGCAAAGTACGTTGGAAGATCTTCAAGAATTTTTAGACAATATGAAAACAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GTP1_OBG MMR_HSR1

Protein Analysis

223

Amino Acids

25.84

Weight (kDa)

5.76

Isoelectric Point (pI)

49.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GCP_N_terminal PF17681 121 - 186 3e-16 Gamma tubulin complex component N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 200
AccB7I CCANNNNNTGG 1 cut(s) 235
AccII CGCG 1 cut(s) 202
AclWI GGATC 2 cut(s) 53, 500
AcsI RAATTY 3 cut(s) 162, 518, 644
AcyI GRCGYC 1 cut(s) 197
AfaI GTAC 3 cut(s) 305, 461, 625
AfiI CCNNNNNNNGG 2 cut(s) 235, 313
AgsI TTSAA 5 cut(s) 18, 33, 161, 548, 641
AjnI CCWGG 1 cut(s) 462
AluBI AGCT 4 cut(s) 75, 310, 362, 571
AluI AGCT 4 cut(s) 75, 310, 362, 571
Alw26I GTCTC 2 cut(s) 332, 361
AlwI GGATC 2 cut(s) 53, 500
AoxI GGCC 2 cut(s) 56, 393
ApeKI GCWGC 1 cut(s) 269
ApoI RAATTY 3 cut(s) 162, 518, 644
Asp700I GAANNNNTTC 1 cut(s) 636
AsuHPI GGTGA 3 cut(s) 58, 416, 527
AsuNHI GCTAGC 2 cut(s) 347, 449
BaeGI GKGCMC 1 cut(s) 29
BaeI ACNNNNGTAYC 2 cut(s) 399, 432
BbvI GCAGC 1 cut(s) 256
BccI CCATC 1 cut(s) 430
BceAI ACGGC 1 cut(s) 43
BciT130I CCWGG 1 cut(s) 464
BclI TGATCA 1 cut(s) 601
BcoDI GTCTC 2 cut(s) 332, 361
BfaI CTAG 3 cut(s) 348, 428, 450
BglII AGATCT 1 cut(s) 634
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
Bme1390I CCNGG 1 cut(s) 464
BmiI GGNNCC 1 cut(s) 87
BmrFI CCNGG 1 cut(s) 464
BmtI GCTAGC 2 cut(s) 351, 453
Bpu10I CCTNAGC 2 cut(s) 311, 390
BsaHI GRCGYC 1 cut(s) 197
BsaJI CCNNGG 3 cut(s) 219, 396, 463
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 313
Bse3DI GCAATG 3 cut(s) 422, 460, 525
BseBI CCWGG 1 cut(s) 464
BseDI CCNNGG 3 cut(s) 219, 396, 463
BseLI CCNNNNNNNGG 2 cut(s) 235, 313
BseMI GCAATG 3 cut(s) 422, 460, 525
BseMII CTCAG 3 cut(s) 327, 372, 522
BseRI GAGGAG 8 cut(s) 81, 84, 116, 119, 122, 125, 128, 131
BseSI GKGCMC 1 cut(s) 29
BseXI GCAGC 1 cut(s) 256
BsgI GTGCAG 1 cut(s) 200
Bsh1236I CGCG 1 cut(s) 202
BshFI GGCC 2 cut(s) 58, 395
BslI CCNNNNNNNGG 2 cut(s) 235, 313
BsmAI GTCTC 2 cut(s) 332, 361
BsnI GGCC 2 cut(s) 58, 395
Bsp1286I GDGCHC 1 cut(s) 29
Bsp143I GATC 7 cut(s) 6, 45, 505, 556, 575, 601, 634
Bsp19I CCATGG 1 cut(s) 396
BspANI GGCC 2 cut(s) 58, 395
BspCNI CTCAG 3 cut(s) 328, 371, 523
BspFNI CGCG 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 87
BspOI GCTAGC 2 cut(s) 351, 453
BspPI GGATC 2 cut(s) 53, 500
BsrDI GCAATG 3 cut(s) 422, 460, 525
BssECI CCNNGG 3 cut(s) 219, 396, 463
BssMI GATC 7 cut(s) 6, 45, 505, 556, 575, 601, 634
BssNI GRCGYC 1 cut(s) 197
BssT1I CCWWGG 2 cut(s) 219, 396
Bst2UI CCWGG 1 cut(s) 464
Bst4CI ACNGT 2 cut(s) 235, 515
Bst6I CTCTTC 2 cut(s) 312, 549
BstACI GRCGYC 1 cut(s) 197
BstC8I GCNNGC 2 cut(s) 349, 451
BstDEI CTNAG 5 cut(s) 311, 336, 358, 390, 531
BstDSI CCRYGG 1 cut(s) 396
BstFNI CGCG 1 cut(s) 202
BstKTI GATC 7 cut(s) 9, 48, 508, 559, 578, 604, 637
BstMAI GTCTC 2 cut(s) 332, 361
BstMBI GATC 7 cut(s) 6, 45, 505, 556, 575, 601, 634
BstMWI GCNNNNNNNGC 2 cut(s) 446, 455
BstNI CCWGG 1 cut(s) 464
BstSCI CCNGG 1 cut(s) 462
BstSLI GKGCMC 1 cut(s) 29
BstUI CGCG 1 cut(s) 202
BstV1I GCAGC 1 cut(s) 256
BstX2I RGATCY 2 cut(s) 45, 634
BstYI RGATCY 2 cut(s) 45, 634
BsuRI GGCC 2 cut(s) 58, 395
BtgI CCRYGG 1 cut(s) 396
Cac8I GCNNGC 2 cut(s) 349, 451
Csp6I GTAC 3 cut(s) 304, 460, 624
CviAII CATG 1 cut(s) 397
CviQI GTAC 3 cut(s) 304, 460, 624
DdeI CTNAG 5 cut(s) 311, 336, 358, 390, 531
DpnI GATC 7 cut(s) 8, 47, 507, 558, 577, 603, 636
DpnII GATC 7 cut(s) 6, 45, 505, 556, 575, 601, 634
Eam1104I CTCTTC 2 cut(s) 312, 549
EarI CTCTTC 2 cut(s) 312, 549
Eco130I CCWWGG 2 cut(s) 219, 396
EcoRII CCWGG 1 cut(s) 462
EcoT14I CCWWGG 2 cut(s) 219, 396
ErhI CCWWGG 2 cut(s) 219, 396
FaeI CATG 1 cut(s) 400
FatI CATG 1 cut(s) 396
FbaI TGATCA 1 cut(s) 601
Fnu4HI GCNGC 1 cut(s) 270
Fsp4HI GCNGC 1 cut(s) 270
FspBI CTAG 3 cut(s) 348, 428, 450
GluI GCNGC 1 cut(s) 270
HaeIII GGCC 2 cut(s) 58, 395
Hin1I GRCGYC 1 cut(s) 197
Hin1II CATG 1 cut(s) 400
HinfI GANTC 4 cut(s) 224, 240, 248, 495
HphI GGTGA 3 cut(s) 58, 416, 527
Hpy188I TCNGA 3 cut(s) 52, 279, 561
Hpy188III TCNNGA 2 cut(s) 599, 641
Hpy99I CGWCG 1 cut(s) 202
HpyAV CCTTC 2 cut(s) 39, 485
HpyCH4III ACNGT 2 cut(s) 235, 515
HpyCH4IV ACGT 2 cut(s) 197, 626
HpyCH4V TGCA 2 cut(s) 181, 619
HpyF10VI GCNNNNNNNGC 2 cut(s) 446, 455
HpyF3I CTNAG 5 cut(s) 311, 336, 358, 390, 531
HpySE526I ACGT 2 cut(s) 197, 626
Hsp92I GRCGYC 1 cut(s) 197
Hsp92II CATG 1 cut(s) 400
Ksp22I TGATCA 1 cut(s) 601
Kzo9I GATC 7 cut(s) 6, 45, 505, 556, 575, 601, 634
LpnPI CCDG 8 cut(s) 68, 320, 348, 387, 449, 476, 590, 599
Lsp1109I GCAGC 1 cut(s) 256
MaeI CTAG 3 cut(s) 348, 428, 450
MaeII ACGT 2 cut(s) 197, 626
MaeIII GTNAC 1 cut(s) 260
MalI GATC 7 cut(s) 8, 47, 507, 558, 577, 603, 636
MboI GATC 7 cut(s) 6, 45, 505, 556, 575, 601, 634
MboII GAAGA 7 cut(s) 92, 329, 536, 584, 587, 629, 644
MflI RGATCY 2 cut(s) 45, 634
MhlI GDGCHC 1 cut(s) 29
MluCI AATT 4 cut(s) 18, 162, 518, 644
MlyI GAGTC 1 cut(s) 504
MmeI TCCRAC 2 cut(s) 23, 609
MroXI GAANNNNTTC 1 cut(s) 636
MseI TTAA 2 cut(s) 120, 291
MspR9I CCNGG 1 cut(s) 464
MvaI CCWGG 1 cut(s) 464
MvnI CGCG 1 cut(s) 202
MwoI GCNNNNNNNGC 2 cut(s) 446, 455
NcoI CCATGG 1 cut(s) 396
NdeII GATC 7 cut(s) 6, 45, 505, 556, 575, 601, 634
NheI GCTAGC 2 cut(s) 347, 449
NlaIII CATG 1 cut(s) 400
NlaIV GGNNCC 1 cut(s) 87
PdmI GAANNNNTTC 1 cut(s) 636
PfeI GAWTC 3 cut(s) 224, 240, 248
PflMI CCANNNNNTGG 1 cut(s) 235
PkrI GCNGC 1 cut(s) 271
PleI GAGTC 1 cut(s) 503
PpsI GAGTC 1 cut(s) 503
Psp6I CCWGG 1 cut(s) 462
PspGI CCWGG 1 cut(s) 462
PspN4I GGNNCC 1 cut(s) 87
PsuI RGATCY 2 cut(s) 45, 634
RsaI GTAC 3 cut(s) 305, 461, 625
RsaNI GTAC 3 cut(s) 304, 460, 624
SaqAI TTAA 2 cut(s) 120, 291
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 7 cut(s) 6, 45, 505, 556, 575, 601, 634
SchI GAGTC 1 cut(s) 504
ScrFI CCNGG 1 cut(s) 464
SduI GDGCHC 1 cut(s) 29
Sse9I AATT 4 cut(s) 18, 162, 518, 644
SspMI CTAG 3 cut(s) 348, 428, 450
StyD4I CCNGG 1 cut(s) 462
StyI CCWWGG 2 cut(s) 219, 396
TaaI ACNGT 2 cut(s) 235, 515
TaiI ACGT 2 cut(s) 200, 629
TasI AATT 4 cut(s) 18, 162, 518, 644
TfiI GAWTC 3 cut(s) 224, 240, 248
Tru1I TTAA 2 cut(s) 120, 291
Tru9I TTAA 2 cut(s) 120, 291
TseI GCWGC 1 cut(s) 269
TspDTI ATGAA 4 cut(s) 68, 344, 504, 514
TspGWI ACGGA 1 cut(s) 157
Van91I CCANNNNNTGG 1 cut(s) 235
XapI RAATTY 3 cut(s) 162, 518, 644
XcmI CCANNNNNNNNNTGG 1 cut(s) 251
XmnI GAANNNNTTC 1 cut(s) 636
XspI CTAG 3 cut(s) 348, 428, 450
ZraI GACGTC 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.