Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002775

Physical Location & Seq

Genomic Coordinates Reverse (-)

6088299 .. 6088490

Gene Structure 192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g07680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGCCAAATGCTGGCAAAAGCACTCTATTAGGGGCTATATTGAGGGCAAAGCCTTCAGTGGGCCATTATGCCTTCACAACTCTTAGTCCCAATTTGGGGAATCTAAACTTCGAAGACTTCTCACTCACAGTTGCAGATATTCCCGGACTCATCGAGGGTTCCCACGAAAATCGTGATTCCTGCAATACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GTP1_OBG MMR_HSR1

Protein Analysis

64

Amino Acids

6.67

Weight (kDa)

5.4

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	2 - 58	1.2e-14	50S ribosome-binding GTPase
FeoB_N	PF02421	2 - 51	5.1e-07	Ferrous iron transport protein B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07615
fragaria_vesca	FvH4_3g36011 FvH4_3g36011 FvH4_3g36011 FvH4_3g36011 FvH4_3g36011 FvH4_3g36011
malus_domestica	MD03G1094400.v1.1 MD11G1109500.v1.1
prunus_persica	Prupe.6G078100_v2.0.a1 Prupe.6G078100_v2.0.a1 Prupe.6G078100_v2.0.a1 Prupe.6G078100_v2.0.a1 Prupe.6G078100_v2.0.a1 Prupe.6G078100_v2.0.a1 Prupe.6G078100_v2.0.a1
pyrus_communis	pycom03g07680
rosa_chinensis	RchiOBHm_Chr2g0137651 RchiOBHm_Chr5g0064441
rosa_laevigata	RLG00000019666 RLG00000035724
rosa_multiflora	Rmu_co8264625.1_g000001 Rmu_sc0000765.1_g000032 Rmu_sc0001125.1_g000005 Rmu_sc0006937.1_g000009
rosa_roxburghii	Rroxscaffold_1G00016560 Rroxscaffold_2G00106970
rosa_rugosa	Rorug02G0343800 Rorug05G0365000
rosa_samantha	Rh2AG391600 Rh2BG399100 Rh2CG378500 Rh2DG414100 Rh5AG423300 Rh5BG438800 Rh5CG461500 Rh5DG452100
rosa_wichuraiana	Rw2G032080 Rw5G039790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	11
AcuI	CTGAAG	1 cut(s)	39
AfiI	CCNNNNNNNGG	4 cut(s)	11, 59, 95, 96
AoxI	GGCC	1 cut(s)	61
AspS9I	GGNCC	1 cut(s)	61
AsuC2I	CCSGG	1 cut(s)	144
AsuII	TTCGAA	1 cut(s)	111
BbsI	GAAGAC	1 cut(s)	120
BcnI	CCSGG	1 cut(s)	144
Bme1390I	CCNGG	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	1 cut(s)	160
BmrFI	CCNGG	1 cut(s)	144
BpiI	GAAGAC	1 cut(s)	120
Bpu14I	TTCGAA	1 cut(s)	111
BpuMI	CCSGG	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	4 cut(s)	11, 59, 95, 96
BseLI	CCNNNNNNNGG	4 cut(s)	11, 59, 95, 96
BshFI	GGCC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	144
BslFI	GGGAC	1 cut(s)	72
BslI	CCNNNNNNNGG	4 cut(s)	11, 59, 95, 96
BsmFI	GGGAC	1 cut(s)	72
BsnI	GGCC	1 cut(s)	63
Bsp119I	TTCGAA	1 cut(s)	111
BspANI	GGCC	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	160
BspT104I	TTCGAA	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	130
BstBI	TTCGAA	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	142
BstV2I	GAAGAC	1 cut(s)	120
BsuRI	GGCC	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	61
CviJI	RGCY	3 cut(s)	35, 52, 63
CviKI_1	RGCY	3 cut(s)	35, 52, 63
DdeI	CTNAG	1 cut(s)	83
Eco57I	CTGAAG	1 cut(s)	39
FaiI	YATR	3 cut(s)	38, 69, 190
FaqI	GGGAC	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	1 cut(s)	144
HinfI	GANTC	3 cut(s)	100, 147, 176
HpaII	CCGG	1 cut(s)	144
Hpy188III	TCNNGA	1 cut(s)	173
HpyAV	CCTTC	2 cut(s)	63, 82
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	2 cut(s)	134, 183
HpyF3I	CTNAG	1 cut(s)	83
LpnPI	CCDG	1 cut(s)	157
MboII	GAAGA	1 cut(s)	125
MluCI	AATT	1 cut(s)	91
MlyI	GAGTC	1 cut(s)	141
MnlI	CCTC	2 cut(s)	36, 148
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	144
NciI	CCSGG	1 cut(s)	144
NlaIV	GGNNCC	1 cut(s)	160
NspV	TTCGAA	1 cut(s)	111
PfeI	GAWTC	2 cut(s)	100, 176
PflMI	CCANNNNNTGG	1 cut(s)	11
PfoI	TCCNGGA	1 cut(s)	142
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
PspN4I	GGNNCC	1 cut(s)	160
PspPI	GGNCC	1 cut(s)	61
Sau96I	GGNCC	1 cut(s)	61
SchI	GAGTC	1 cut(s)	141
ScrFI	CCNGG	1 cut(s)	144
SfuI	TTCGAA	1 cut(s)	111
SgeI	CNNG	6 cut(s)	24, 155, 156, 166, 176, 185
Sse9I	AATT	1 cut(s)	91
StyD4I	CCNGG	1 cut(s)	142
TaaI	ACNGT	1 cut(s)	130
TaqI	TCGA	2 cut(s)	111, 153
TasI	AATT	1 cut(s)	91
TfiI	GAWTC	2 cut(s)	100, 176
TscAI	CASTG	1 cut(s)	63
TspRI	CASTG	1 cut(s)	63
Van91I	CCANNNNNTGG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.