MD03G1094400.v1.1

GTP-binding protein OBGM, mitochondrial

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0002775
Physical Location & Seq
Reverse (-)
7931105 .. 7932406
1302 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1094400.v1.1.491

Sequence Viewer

Length: 759 bp
ATGCTAAAGGGGGTAGTGGTGGCAGTGGTTGCACCAGCTCTCGCTGCGGTTGACATGATCTCCGTGGCAGACCTGATGAGTTGCTCAGAAAATGAGACAGAGAAAAAAGATCACATTCAGCACAATGTTGCTGAATTTACTGTACAAGTTCAACGAGTAATTATTGCTTGTGGAGGGGAATGGGGTATGGGAAATGTGTCCTCTGTGAAAGTATTTGATGATGAGGAGTCGTCCCTTCGAGTTGCCTCGTCGACATGCCCAAATGCTGGCAAAAGTACTCTGTTAGGGGCTACATCGAGGCCAAAGCCTGCAGTGGGCCATTATGCCTTCACAACTCTTAGTCCCAATTTGGGGAATCTAAACTTTGAAGACTTCTCACTCACAGTTGCAGATATTCCCAGACTCATAGAGGGTGCCCATGAAAATCGTGGACTTGGACATGCATTCCTGCAATACATAGAACGCACAAAAGTTCTAGCTTATGTGGTAGACCTGGCTTCTGGATTGGATGGTAGAGTTGGAATCCCACCTTGGGAACAACTTCGGGATTTAGTTTTTGAACTCGAGTACCACCAAGAAAGTTTATCTAATCGTCAATCCTTGATAGTAGCAAATAAAATAGAAGAGGACGGTGGTGAAGAAGTGTATGAAGAATTGGAAAGAAGGGTGCAAGATGTTTCTATCTTCCCTGTCTGTGCTGTTCTGGAGGACGGAGTGCCAGAGGCAAAACTTGCTCAGTTGCTCTTAAGAAGCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GTP1_OBG MMR_HSR1

Protein Analysis

253

Amino Acids

27.47

Weight (kDa)

4.74

Isoelectric Point (pI)

51.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 87 - 206 2.7e-16 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 413
AccB7I CCANNNNNTGG 1 cut(s) 266
AccI GTMKAC 2 cut(s) 251, 489
AciI CCGC 1 cut(s) 47
AcsI RAATTY 1 cut(s) 134
AfaI GTAC 3 cut(s) 144, 277, 569
AfiI CCNNNNNNNGG 5 cut(s) 266, 314, 350, 351, 532
AflII CTTAAG 1 cut(s) 745
AgsI TTSAA 3 cut(s) 152, 368, 560
AjnI CCWGG 1 cut(s) 492
AjuI GAANNNNNNNTTGG 2 cut(s) 514, 546
AluBI AGCT 3 cut(s) 38, 479, 753
AluI AGCT 3 cut(s) 38, 479, 753
Alw26I GTCTC 1 cut(s) 89
Ama87I CYCGRG 1 cut(s) 563
AoxI GGCC 2 cut(s) 299, 316
ApeKI GCWGC 1 cut(s) 44
ApoI RAATTY 1 cut(s) 134
Asp700I GAANNNNTTC 1 cut(s) 540
AspS9I GGNCC 1 cut(s) 316
AsuHPI GGTGA 1 cut(s) 647
AvaI CYCGRG 1 cut(s) 563
BaeGI GKGCMC 1 cut(s) 418
BaeI ACNNNNGTAYC 2 cut(s) 551, 584
BanI GGYRCC 1 cut(s) 413
BbsI GAAGAC 1 cut(s) 375
BbvI GCAGC 1 cut(s) 31
BccI CCATC 1 cut(s) 503
BciT130I CCWGG 1 cut(s) 494
BcoDI GTCTC 1 cut(s) 89
BfaI CTAG 1 cut(s) 476
BfmI CTRYAG 1 cut(s) 309
BfrI CTTAAG 1 cut(s) 745
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
BmcAI AGTACT 1 cut(s) 277
Bme1390I CCNGG 1 cut(s) 494
BmeT110I CYCGRG 1 cut(s) 563
BmgT120I GGNCC 1 cut(s) 316
BmiI GGNNCC 1 cut(s) 415
BmrFI CCNGG 1 cut(s) 494
BpiI GAAGAC 1 cut(s) 375
BpmI CTGGAG 1 cut(s) 725
BsaJI CCNNGG 2 cut(s) 63, 530
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 5 cut(s) 266, 314, 350, 351, 532
BseBI CCWGG 1 cut(s) 494
BseDI CCNNGG 2 cut(s) 63, 530
BseGI GGATG 1 cut(s) 514
BseLI CCNNNNNNNGG 5 cut(s) 266, 314, 350, 351, 532
BseMII CTCAG 2 cut(s) 99, 749
BseRI GAGGAG 1 cut(s) 239
BseSI GKGCMC 1 cut(s) 418
BseXI GCAGC 1 cut(s) 31
BshFI GGCC 2 cut(s) 301, 318
BshNI GGYRCC 1 cut(s) 413
BsiHKCI CYCGRG 1 cut(s) 563
BslFI GGGAC 2 cut(s) 217, 327
BslI CCNNNNNNNGG 5 cut(s) 266, 314, 350, 351, 532
BsmAI GTCTC 1 cut(s) 89
BsmFI GGGAC 2 cut(s) 217, 327
BsmI GAATGC 1 cut(s) 443
BsnI GGCC 2 cut(s) 301, 318
BsoBI CYCGRG 1 cut(s) 563
Bsp1286I GDGCHC 1 cut(s) 418
Bsp1407I TGTACA 1 cut(s) 142
Bsp143I GATC 2 cut(s) 57, 109
BspACI CCGC 1 cut(s) 47
BspANI GGCC 2 cut(s) 301, 318
BspCNI CTCAG 2 cut(s) 98, 748
BspLI GGNNCC 1 cut(s) 415
BspMAI CTGCAG 1 cut(s) 313
BspT107I GGYRCC 1 cut(s) 413
BspTI CTTAAG 1 cut(s) 745
BsrGI TGTACA 1 cut(s) 142
BssECI CCNNGG 2 cut(s) 63, 530
BssMI GATC 2 cut(s) 57, 109
BssT1I CCWWGG 1 cut(s) 530
Bst2UI CCWGG 1 cut(s) 494
Bst4CI ACNGT 3 cut(s) 142, 385, 632
Bst6I CTCTTC 1 cut(s) 618
BstAFI CTTAAG 1 cut(s) 745
BstAPI GCANNNNNTGC 2 cut(s) 29, 731
BstAUI TGTACA 1 cut(s) 142
BstC8I GCNNGC 2 cut(s) 268, 309
BstDEI CTNAG 3 cut(s) 85, 338, 735
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 1 cut(s) 514
BstKTI GATC 2 cut(s) 60, 112
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 2 cut(s) 57, 109
BstMWI GCNNNNNNNGC 3 cut(s) 29, 44, 731
BstNI CCWGG 1 cut(s) 494
BstNSI RCATGY 2 cut(s) 258, 443
BstSCI CCNGG 1 cut(s) 492
BstSFI CTRYAG 1 cut(s) 309
BstSLI GKGCMC 1 cut(s) 418
BstV1I GCAGC 1 cut(s) 31
BstV2I GAAGAC 1 cut(s) 375
BsuRI GGCC 2 cut(s) 301, 318
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 1 cut(s) 514
BtsI GCAGTG 2 cut(s) 30, 318
BtsIMutI CAGTG 2 cut(s) 30, 318
Cac8I GCNNGC 2 cut(s) 268, 309
Cfr13I GGNCC 1 cut(s) 316
Csp6I GTAC 3 cut(s) 143, 276, 568
CviAII CATG 4 cut(s) 55, 255, 419, 440
CviJI RGCY 8 cut(s) 38, 290, 301, 307, 318, 479, 497, 753
CviKI_1 RGCY 8 cut(s) 38, 290, 301, 307, 318, 479, 497, 753
CviQI GTAC 3 cut(s) 143, 276, 568
DdeI CTNAG 3 cut(s) 85, 338, 735
DpnI GATC 2 cut(s) 59, 111
DpnII GATC 2 cut(s) 57, 109
Eam1104I CTCTTC 1 cut(s) 618
EarI CTCTTC 1 cut(s) 618
Eco130I CCWWGG 1 cut(s) 530
Eco88I CYCGRG 1 cut(s) 563
EcoRII CCWGG 1 cut(s) 492
EcoT14I CCWWGG 1 cut(s) 530
EcoT22I ATGCAT 1 cut(s) 445
ErhI CCWWGG 1 cut(s) 530
FaeI CATG 4 cut(s) 58, 258, 422, 443
FaqI GGGAC 2 cut(s) 217, 327
FatI CATG 4 cut(s) 54, 254, 418, 439
FblI GTMKAC 2 cut(s) 251, 489
Fnu4HI GCNGC 1 cut(s) 45
FokI GGATG 1 cut(s) 521
Fsp4HI GCNGC 1 cut(s) 45
FspBI CTAG 1 cut(s) 476
GluI GCNGC 1 cut(s) 45
GsuI CTGGAG 1 cut(s) 725
HaeIII GGCC 2 cut(s) 301, 318
Hin1II CATG 4 cut(s) 58, 258, 422, 443
HincII GTYRAC 2 cut(s) 52, 252
HindII GTYRAC 2 cut(s) 52, 252
HindIII AAGCTT 1 cut(s) 751
HinfI GANTC 4 cut(s) 227, 355, 402, 522
HphI GGTGA 1 cut(s) 647
Hpy166II GTNNAC 4 cut(s) 52, 252, 431, 490
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 3 cut(s) 501, 545, 704
Hpy8I GTNNAC 4 cut(s) 52, 252, 431, 490
Hpy99I CGWCG 1 cut(s) 253
HpyAV CCTTC 3 cut(s) 245, 337, 657
HpyCH4III ACNGT 3 cut(s) 142, 385, 632
HpyCH4V TGCA 6 cut(s) 32, 311, 389, 443, 451, 670
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 44, 731
HpyF3I CTNAG 3 cut(s) 85, 338, 735
Hsp92II CATG 4 cut(s) 58, 258, 422, 443
Kzo9I GATC 2 cut(s) 57, 109
Lsp1109I GCAGC 1 cut(s) 31
MaeI CTAG 1 cut(s) 476
MalI GATC 2 cut(s) 59, 111
MboI GATC 2 cut(s) 57, 109
MboII GAAGA 5 cut(s) 380, 635, 650, 662, 676
MhlI GDGCHC 1 cut(s) 418
MluCI AATT 4 cut(s) 134, 159, 346, 653
MlyI GAGTC 2 cut(s) 236, 396
MmeI TCCRAC 1 cut(s) 499
MnlI CCTC 9 cut(s) 167, 211, 217, 256, 291, 403, 619, 700, 715
Mph1103I ATGCAT 1 cut(s) 445
MroXI GAANNNNTTC 1 cut(s) 540
MseI TTAA 1 cut(s) 746
MspCI CTTAAG 1 cut(s) 745
MspR9I CCNGG 1 cut(s) 494
Mva1269I GAATGC 1 cut(s) 443
MvaI CCWGG 1 cut(s) 494
MwoI GCNNNNNNNGC 3 cut(s) 29, 44, 731
NdeII GATC 2 cut(s) 57, 109
NlaIII CATG 4 cut(s) 58, 258, 422, 443
NlaIV GGNNCC 1 cut(s) 415
NsiI ATGCAT 1 cut(s) 445
NspI RCATGY 2 cut(s) 258, 443
PaeR7I CTCGAG 1 cut(s) 563
PctI GAATGC 1 cut(s) 443
PdmI GAANNNNTTC 1 cut(s) 540
PfeI GAWTC 2 cut(s) 355, 522
PflMI CCANNNNNTGG 1 cut(s) 266
PkrI GCNGC 1 cut(s) 46
PleI GAGTC 2 cut(s) 235, 396
PpsI GAGTC 2 cut(s) 235, 396
Psp6I CCWGG 1 cut(s) 492
PspGI CCWGG 1 cut(s) 492
PspN4I GGNNCC 1 cut(s) 415
PspPI GGNCC 1 cut(s) 316
PspXI VCTCGAGB 1 cut(s) 563
PstI CTGCAG 1 cut(s) 313
RsaI GTAC 3 cut(s) 144, 277, 569
RsaNI GTAC 3 cut(s) 143, 276, 568
SalI GTCGAC 1 cut(s) 250
SaqAI TTAA 1 cut(s) 746
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 2 cut(s) 57, 109
Sau96I GGNCC 1 cut(s) 316
ScaI AGTACT 1 cut(s) 277
SchI GAGTC 2 cut(s) 236, 396
ScrFI CCNGG 1 cut(s) 494
SduI GDGCHC 1 cut(s) 418
SetI ASST 6 cut(s) 40, 75, 481, 495, 532, 755
SfcI CTRYAG 1 cut(s) 309
Sfr274I CTCGAG 1 cut(s) 563
SlaI CTCGAG 1 cut(s) 563
SmlI CTYRAG 2 cut(s) 563, 745
SmoI CTYRAG 2 cut(s) 563, 745
Sse9I AATT 4 cut(s) 134, 159, 346, 653
SsiI CCGC 1 cut(s) 47
SspMI CTAG 1 cut(s) 476
StyD4I CCNGG 1 cut(s) 492
StyI CCWWGG 1 cut(s) 530
TaaI ACNGT 3 cut(s) 142, 385, 632
TaqI TCGA 4 cut(s) 238, 251, 296, 564
TasI AATT 4 cut(s) 134, 159, 346, 653
TatI WGTACW 2 cut(s) 142, 275
TfiI GAWTC 2 cut(s) 355, 522
Tru1I TTAA 1 cut(s) 746
Tru9I TTAA 1 cut(s) 746
TscAI CASTG 2 cut(s) 30, 318
TseI GCWGC 1 cut(s) 44
TspDTI ATGAA 2 cut(s) 435, 663
TspGWI ACGGA 2 cut(s) 52, 726
TspRI CASTG 2 cut(s) 30, 318
Van91I CCANNNNNTGG 1 cut(s) 266
Vha464I CTTAAG 1 cut(s) 745
XapI RAATTY 1 cut(s) 134
XceI RCATGY 2 cut(s) 258, 443
XcmI CCANNNNNNNNNTGG 1 cut(s) 425
XhoI CTCGAG 1 cut(s) 563
XmiI GTMKAC 2 cut(s) 251, 489
XmnI GAANNNNTTC 1 cut(s) 540
XspI CTAG 1 cut(s) 476
ZrmI AGTACT 1 cut(s) 277
Zsp2I ATGCAT 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.