Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8264625.1

Orthogroup ID

OG0002775

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 774

Gene Structure 774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8264625.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atggggtggatttcctgctcaatcagatgtttacccgttttatcacttggtcaacccggagaggaggttactttggagttgattctacgagttgttgctgatgttggtttggttggcctcccaaatgctggaaagtcaacccttttggcagctactacccttgcaaaacctgatattgctgattatcctttcacaaccttaatgccgaacctaggacgtcttaatggtgacccaagtttaggggctcagatgtatacttctgaagcaacattggcagatttacctggtcttattgaaggtgctcatcttgggaagggtctaggtcgcaacttcttgaggcatctaaggaggactcggctattggtccatgttgttgatgcagcagccgaggatcctgttaatgactacagaaccgtcaaagaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GTP1_OBG MMR_HSR1

Protein Analysis

141

Amino Acids

15.07

Weight (kDa)

5.89

Isoelectric Point (pI)

36.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07615
fragaria_vesca	FvH4_3g36011 FvH4_3g36011 FvH4_3g36011 FvH4_3g36011 FvH4_3g36011 FvH4_3g36011
malus_domestica	MD03G1094400.v1.1 MD11G1109500.v1.1
prunus_persica	Prupe.6G078100_v2.0.a1 Prupe.6G078100_v2.0.a1 Prupe.6G078100_v2.0.a1 Prupe.6G078100_v2.0.a1 Prupe.6G078100_v2.0.a1 Prupe.6G078100_v2.0.a1 Prupe.6G078100_v2.0.a1
pyrus_communis	pycom03g07680
rosa_chinensis	RchiOBHm_Chr2g0137651 RchiOBHm_Chr5g0064441
rosa_laevigata	RLG00000019666 RLG00000035724
rosa_multiflora	Rmu_co8264625.1_g000001 Rmu_sc0000765.1_g000032 Rmu_sc0001125.1_g000005 Rmu_sc0006937.1_g000009
rosa_roxburghii	Rroxscaffold_1G00016560 Rroxscaffold_2G00106970
rosa_rugosa	Rorug02G0343800 Rorug05G0365000
rosa_samantha	Rh2AG391600 Rh2BG399100 Rh2CG378500 Rh2DG414100 Rh5AG423300 Rh5BG438800 Rh5CG461500 Rh5DG452100
rosa_wichuraiana	Rw2G032080 Rw5G039790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	220
AccB7I	CCANNNNNTGG	1 cut(s)	128
AccI	GTMKAC	1 cut(s)	254
AclWI	GGATC	2 cut(s)	386, 399
AcuI	CTGAAG	1 cut(s)	282
AcyI	GRCGYC	1 cut(s)	217
AfiI	CCNNNNNNNGG	3 cut(s)	128, 212, 239
AgsI	TTSAA	1 cut(s)	296
AjnI	CCWGG	1 cut(s)	283
AluBI	AGCT	1 cut(s)	152
AluI	AGCT	1 cut(s)	152
Alw21I	GWGCWC	1 cut(s)	304
AlwI	GGATC	2 cut(s)	386, 399
AoxI	GGCC	1 cut(s)	115
ApeKI	GCWGC	3 cut(s)	149, 380, 383
AspA2I	CCTAGG	1 cut(s)	211
AspS9I	GGNCC	1 cut(s)	364
AsuC2I	CCSGG	1 cut(s)	57
AsuHPI	GGTGA	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	364
AvrII	CCTAGG	1 cut(s)	211
BamHI	GGATCC	1 cut(s)	391
BanII	GRGCYC	1 cut(s)	247
Bbv12I	GWGCWC	1 cut(s)	304
BbvI	GCAGC	3 cut(s)	161, 392, 395
BciT130I	CCWGG	1 cut(s)	285
BcnI	CCSGG	1 cut(s)	57
BfaI	CTAG	2 cut(s)	212, 320
BfmI	CTRYAG	1 cut(s)	406
BisI	GCNGC	3 cut(s)	150, 381, 384
BlnI	CCTAGG	1 cut(s)	211
BlsI	GCNGC	3 cut(s)	151, 382, 385
Bme1390I	CCNGG	2 cut(s)	57, 285
Bme18I	GGWCC	1 cut(s)	364
BmgT120I	GGNCC	1 cut(s)	364
BmiI	GGNNCC	1 cut(s)	393
BmrFI	CCNGG	2 cut(s)	57, 285
BmsI	GCATC	2 cut(s)	349, 367
BpuEI	CTTGAG	1 cut(s)	355
BpuMI	CCSGG	1 cut(s)	57
BsaHI	GRCGYC	1 cut(s)	217
BsaJI	CCNNGG	2 cut(s)	211, 387
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 212, 239
BseBI	CCWGG	1 cut(s)	285
BseDI	CCNNGG	2 cut(s)	211, 387
BseLI	CCNNNNNNNGG	3 cut(s)	128, 212, 239
BseMII	CTCAG	1 cut(s)	260
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	3 cut(s)	161, 392, 395
BshFI	GGCC	1 cut(s)	117
BsiHKAI	GWGCWC	1 cut(s)	304
BsiSI	CCGG	1 cut(s)	57
BslI	CCNNNNNNNGG	3 cut(s)	128, 212, 239
BsnI	GGCC	1 cut(s)	117
Bsp1286I	GDGCHC	2 cut(s)	247, 304
Bsp143I	GATC	1 cut(s)	391
BspANI	GGCC	1 cut(s)	117
BspCNI	CTCAG	1 cut(s)	259
BspLI	GGNNCC	1 cut(s)	393
BspPI	GGATC	2 cut(s)	386, 399
BssECI	CCNNGG	2 cut(s)	211, 387
BssMI	GATC	1 cut(s)	391
BssNAI	GTATAC	1 cut(s)	255
BssNI	GRCGYC	1 cut(s)	217
BssT1I	CCWWGG	1 cut(s)	211
Bst1107I	GTATAC	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	285
Bst4CI	ACNGT	1 cut(s)	415
BstACI	GRCGYC	1 cut(s)	217
BstDEI	CTNAG	2 cut(s)	246, 344
BstEII	GGTNACC	1 cut(s)	227
BstKTI	GATC	1 cut(s)	394
BstMBI	GATC	1 cut(s)	391
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstNI	CCWGG	1 cut(s)	285
BstPI	GGTNACC	1 cut(s)	227
BstSCI	CCNGG	2 cut(s)	55, 283
BstSFI	CTRYAG	1 cut(s)	406
BstV1I	GCAGC	3 cut(s)	161, 392, 395
BstX2I	RGATCY	1 cut(s)	391
BstYI	RGATCY	1 cut(s)	391
BstZ17I	GTATAC	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	364
CsiI	ACCWGGT	1 cut(s)	283
CviAII	CATG	1 cut(s)	368
CviJI	RGCY	5 cut(s)	117, 152, 245, 358, 386
CviKI_1	RGCY	5 cut(s)	117, 152, 245, 358, 386
DdeI	CTNAG	2 cut(s)	246, 344
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
Eco130I	CCWWGG	1 cut(s)	211
Eco24I	GRGCYC	1 cut(s)	247
Eco47I	GGWCC	1 cut(s)	364
Eco57I	CTGAAG	1 cut(s)	282
Eco91I	GGTNACC	1 cut(s)	227
EcoO65I	GGTNACC	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	211
FaeI	CATG	1 cut(s)	371
FaiI	YATR	2 cut(s)	255, 369
FatI	CATG	1 cut(s)	367
FblI	GTMKAC	1 cut(s)	254
Fnu4HI	GCNGC	3 cut(s)	150, 381, 384
FriOI	GRGCYC	1 cut(s)	247
Fsp4HI	GCNGC	3 cut(s)	150, 381, 384
FspBI	CTAG	2 cut(s)	212, 320
GluI	GCNGC	3 cut(s)	150, 381, 384
HaeIII	GGCC	1 cut(s)	117
HapII	CCGG	1 cut(s)	57
Hin1I	GRCGYC	1 cut(s)	217
Hin1II	CATG	1 cut(s)	371
HincII	GTYRAC	2 cut(s)	53, 138
HindII	GTYRAC	2 cut(s)	53, 138
HinfI	GANTC	2 cut(s)	82, 352
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	4 cut(s)	32, 53, 138, 255
Hpy188I	TCNGA	3 cut(s)	26, 249, 262
Hpy188III	TCNNGA	1 cut(s)	334
Hpy8I	GTNNAC	4 cut(s)	32, 53, 138, 255
HpyAV	CCTTC	2 cut(s)	290, 307
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4IV	ACGT	1 cut(s)	217
HpyCH4V	TGCA	2 cut(s)	164, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	2 cut(s)	246, 344
HpySE526I	ACGT	1 cut(s)	217
Hsp92I	GRCGYC	1 cut(s)	217
Hsp92II	CATG	1 cut(s)	371
Kzo9I	GATC	1 cut(s)	391
LpnPI	CCDG	7 cut(s)	28, 70, 114, 183, 270, 297, 408
Lsp1109I	GCAGC	3 cut(s)	161, 392, 395
LweI	GCATC	2 cut(s)	349, 367
MabI	ACCWGGT	1 cut(s)	283
MaeI	CTAG	2 cut(s)	212, 320
MaeII	ACGT	1 cut(s)	217
MaeIII	GTNAC	2 cut(s)	67, 227
MalI	GATC	1 cut(s)	393
MboI	GATC	1 cut(s)	391
MflI	RGATCY	1 cut(s)	391
MhlI	GDGCHC	2 cut(s)	247, 304
MlyI	GAGTC	1 cut(s)	346
MnlI	CCTC	6 cut(s)	55, 58, 128, 330, 342, 382
MseI	TTAA	3 cut(s)	200, 222, 399
MspI	CCGG	1 cut(s)	57
MspR9I	CCNGG	2 cut(s)	57, 285
MvaI	CCWGG	1 cut(s)	285
MwoI	GCNNNNNNNGC	1 cut(s)	272
NciI	CCSGG	1 cut(s)	57
NdeII	GATC	1 cut(s)	391
NlaIII	CATG	1 cut(s)	371
NlaIV	GGNNCC	1 cut(s)	393
NmeAIII	GCCGAG	2 cut(s)	334, 412
NmuCI	GTSAC	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	82
PflMI	CCANNNNNTGG	1 cut(s)	128
PkrI	GCNGC	3 cut(s)	151, 382, 385
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
Psp6I	CCWGG	1 cut(s)	283
PspEI	GGTNACC	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	283
PspN4I	GGNNCC	1 cut(s)	393
PspPI	GGNCC	1 cut(s)	364
PsuI	RGATCY	1 cut(s)	391
SaqAI	TTAA	3 cut(s)	200, 222, 399
SatI	GCNGC	3 cut(s)	150, 381, 384
Sau3AI	GATC	1 cut(s)	391
Sau96I	GGNCC	1 cut(s)	364
SchI	GAGTC	1 cut(s)	346
ScrFI	CCNGG	2 cut(s)	57, 285
SduI	GDGCHC	2 cut(s)	247, 304
SetI	ASST	9 cut(s)	69, 154, 172, 200, 213, 220, 286, 301, 325
SexAI	ACCWGGT	1 cut(s)	283
SfaNI	GCATC	2 cut(s)	349, 367
SfcI	CTRYAG	1 cut(s)	406
SinI	GGWCC	1 cut(s)	364
SmlI	CTYRAG	1 cut(s)	334
SmoI	CTYRAG	1 cut(s)	334
SspMI	CTAG	2 cut(s)	212, 320
StyD4I	CCNGG	2 cut(s)	55, 283
StyI	CCWWGG	1 cut(s)	211
TaaI	ACNGT	1 cut(s)	415
TaiI	ACGT	1 cut(s)	220
TfiI	GAWTC	1 cut(s)	82
Tru1I	TTAA	3 cut(s)	200, 222, 399
Tru9I	TTAA	3 cut(s)	200, 222, 399
TseFI	GTSAC	1 cut(s)	227
TseI	GCWGC	3 cut(s)	149, 380, 383
Tsp45I	GTSAC	1 cut(s)	227
Van91I	CCANNNNNTGG	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	364
XmaJI	CCTAGG	1 cut(s)	211
XmiI	GTMKAC	1 cut(s)	254
XspI	CTAG	2 cut(s)	212, 320
ZraI	GACGTC	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.