Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006937.1

Orthogroup ID

OG0002775

Physical Location & Seq

Genomic Coordinates Reverse (-)

19888 .. 20667

Gene Structure 780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006937.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

atgcaatacaacgttgctgagttaacagtaagaggtcaacgactagttattgctcgtggagcggaaggtggtctaggtagcgtgtctctcaaagtcccaaggaagttcaaaactgattcgttagatgctcgagtatctgatgatgatcagttgaccctcggtgctggtttgcctggttctgaagctgttctcatattagagctaaagagcattgctgatgtgagcctagtgggaatgccgaatgctggtaaaagtactctattaggggctatatctagggctaagcctgcagtgggccattacgccttcaccactcttagacccaatttggggaacctaaactttgatgacttttcactcacggttgctgatgttccgggactcataaagggtgcccatgagaatcgtggacttggacatgcattccttcgccatatagaacgcacaaaggttatagcttatgtggtggacttggctgctggattggatggtcgaaaaggaaccccaccttgggaacagcttagagatttggtcttagagcttgagtaccatcaagtgggtttatctgatcgaccatcactcatagtggcaaataaaatagatgaggaagggactgaaggcgtgcatgaagaactgaaaagaagggtgcaagatgttcctatattccctgtctgtgctattttgggggaaggaattcaagagctaaagattggtcttaggaaacttgtgaatggtgaaatgacagacagacttcaggttgataaaattatggttgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GTP1_OBG MMR_HSR1

Protein Analysis

259

Amino Acids

28.05

Weight (kDa)

5.91

Isoelectric Point (pI)

28.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07615
fragaria_vesca	FvH4_3g36011 FvH4_3g36011 FvH4_3g36011 FvH4_3g36011 FvH4_3g36011 FvH4_3g36011
malus_domestica	MD03G1094400.v1.1 MD11G1109500.v1.1
prunus_persica	Prupe.6G078100_v2.0.a1 Prupe.6G078100_v2.0.a1 Prupe.6G078100_v2.0.a1 Prupe.6G078100_v2.0.a1 Prupe.6G078100_v2.0.a1 Prupe.6G078100_v2.0.a1 Prupe.6G078100_v2.0.a1
pyrus_communis	pycom03g07680
rosa_chinensis	RchiOBHm_Chr2g0137651 RchiOBHm_Chr5g0064441
rosa_laevigata	RLG00000019666 RLG00000035724
rosa_multiflora	Rmu_co8264625.1_g000001 Rmu_sc0000765.1_g000032 Rmu_sc0001125.1_g000005 Rmu_sc0006937.1_g000009
rosa_roxburghii	Rroxscaffold_1G00016560 Rroxscaffold_2G00106970
rosa_rugosa	Rorug02G0343800 Rorug05G0365000
rosa_samantha	Rh2AG391600 Rh2BG399100 Rh2CG378500 Rh2DG414100 Rh5AG423300 Rh5BG438800 Rh5CG461500 Rh5DG452100
rosa_wichuraiana	Rw2G032080 Rw5G039790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	392
AccB7I	CCANNNNNTGG	1 cut(s)	556
AccBSI	CCGCTC	1 cut(s)	62
AciI	CCGC	1 cut(s)	62
AclI	AACGTT	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	693
AcuI	CTGAAG	3 cut(s)	201, 636, 737
AfaI	GTAC	2 cut(s)	256, 548
AfiI	CCNNNNNNNGG	7 cut(s)	245, 293, 329, 330, 510, 511, 556
AgsI	TTSAA	2 cut(s)	109, 698
AhlI	ACTAGT	1 cut(s)	43
AjnI	CCWGG	1 cut(s)	172
AjuI	GAANNNNNNNTTGG	2 cut(s)	493, 525
AluBI	AGCT	6 cut(s)	185, 202, 458, 520, 541, 703
AluI	AGCT	6 cut(s)	185, 202, 458, 520, 541, 703
Alw26I	GTCTC	1 cut(s)	90
Ama87I	CYCGRG	1 cut(s)	129
AoxI	GGCC	1 cut(s)	295
ApeKI	GCWGC	1 cut(s)	476
ApoI	RAATTY	1 cut(s)	693
Asp700I	GAANNNNTTC	2 cut(s)	186, 693
AspS9I	GGNCC	1 cut(s)	295
AsuC2I	CCSGG	1 cut(s)	378
AsuHPI	GGTGA	2 cut(s)	301, 746
AvaI	CYCGRG	1 cut(s)	129
BaeGI	GKGCMC	1 cut(s)	397
BanI	GGYRCC	1 cut(s)	392
BauI	CACGAG	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	3 cut(s)	482, 558, 583
BciT130I	CCWGG	1 cut(s)	174
BclI	TGATCA	1 cut(s)	145
BcnI	CCSGG	1 cut(s)	378
BcoDI	GTCTC	1 cut(s)	90
BcuI	ACTAGT	1 cut(s)	43
BfaI	CTAG	4 cut(s)	44, 74, 227, 276
BfmI	CTRYAG	1 cut(s)	288
BisI	GCNGC	1 cut(s)	477
BlpI	GCTNAGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	478
BmcAI	AGTACT	1 cut(s)	256
Bme1390I	CCNGG	2 cut(s)	174, 378
BmeT110I	CYCGRG	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	295
BmiI	GGNNCC	3 cut(s)	335, 394, 502
BmrFI	CCNGG	2 cut(s)	174, 378
BmsI	GCATC	1 cut(s)	115
Bpu1102I	GCTNAGC	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	563
BpuMI	CCSGG	1 cut(s)	378
BsaBI	GATNNNNATC	1 cut(s)	144
BsaJI	CCNNGG	3 cut(s)	98, 157, 509
Bsc4I	CCNNNNNNNGG	7 cut(s)	245, 293, 329, 330, 510, 511, 556
Bse3DI	GCAATG	1 cut(s)	210
Bse8I	GATNNNNATC	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	3 cut(s)	98, 157, 509
BseGI	GGATG	1 cut(s)	493
BseJI	GATNNNNATC	1 cut(s)	144
BseLI	CCNNNNNNNGG	7 cut(s)	245, 293, 329, 330, 510, 511, 556
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	1 cut(s)	9
BseSI	GKGCMC	1 cut(s)	397
BseXI	GCAGC	1 cut(s)	463
BshFI	GGCC	1 cut(s)	297
BshNI	GGYRCC	1 cut(s)	392
BsiHKCI	CYCGRG	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	377
BslFI	GGGAC	3 cut(s)	80, 393, 625
BslI	CCNNNNNNNGG	7 cut(s)	245, 293, 329, 330, 510, 511, 556
BsmAI	GTCTC	1 cut(s)	90
BsmFI	GGGAC	3 cut(s)	80, 393, 625
BsmI	GAATGC	3 cut(s)	240, 247, 422
BsnI	GGCC	1 cut(s)	297
BsoBI	CYCGRG	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	2 cut(s)	145, 568
Bsp1720I	GCTNAGC	1 cut(s)	282
BspACI	CCGC	1 cut(s)	62
BspANI	GGCC	1 cut(s)	297
BspCNI	CTCAG	1 cut(s)	10
BspLI	GGNNCC	3 cut(s)	335, 394, 502
BspMAI	CTGCAG	1 cut(s)	292
BspT107I	GGYRCC	1 cut(s)	392
BsrBI	CCGCTC	1 cut(s)	62
BsrDI	GCAATG	1 cut(s)	210
BssECI	CCNNGG	3 cut(s)	98, 157, 509
BssMI	GATC	2 cut(s)	145, 568
BssSI	CACGAG	1 cut(s)	54
BssT1I	CCWWGG	2 cut(s)	98, 509
Bst2BI	CACGAG	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	2 cut(s)	28, 364
BstC8I	GCNNGC	2 cut(s)	288, 623
BstDEI	CTNAG	6 cut(s)	18, 282, 317, 521, 535, 716
BstF5I	GGATG	1 cut(s)	493
BstKTI	GATC	2 cut(s)	148, 571
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	2 cut(s)	145, 568
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 287
BstNI	CCWGG	1 cut(s)	174
BstNSI	RCATGY	1 cut(s)	422
BstSCI	CCNGG	2 cut(s)	172, 376
BstSFI	CTRYAG	1 cut(s)	288
BstSLI	GKGCMC	1 cut(s)	397
BstV1I	GCAGC	1 cut(s)	463
BsuRI	GGCC	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	493
BtsI	GCAGTG	1 cut(s)	297
BtsIMutI	CAGTG	1 cut(s)	297
Cac8I	GCNNGC	2 cut(s)	288, 623
Cfr13I	GGNCC	1 cut(s)	295
Csp6I	GTAC	2 cut(s)	255, 547
CviAII	CATG	3 cut(s)	398, 419, 626
CviQI	GTAC	2 cut(s)	255, 547
DdeI	CTNAG	6 cut(s)	18, 282, 317, 521, 535, 716
DpnI	GATC	2 cut(s)	147, 570
DpnII	GATC	2 cut(s)	145, 568
Eco130I	CCWWGG	2 cut(s)	98, 509
Eco57I	CTGAAG	3 cut(s)	201, 636, 737
Eco88I	CYCGRG	1 cut(s)	129
EcoRI	GAATTC	1 cut(s)	693
EcoRII	CCWGG	1 cut(s)	172
EcoT14I	CCWWGG	2 cut(s)	98, 509
EcoT22I	ATGCAT	1 cut(s)	424
ErhI	CCWWGG	2 cut(s)	98, 509
FaeI	CATG	3 cut(s)	401, 422, 629
FaqI	GGGAC	3 cut(s)	80, 393, 625
FatI	CATG	3 cut(s)	397, 418, 625
FbaI	TGATCA	1 cut(s)	145
Fnu4HI	GCNGC	1 cut(s)	477
FokI	GGATG	1 cut(s)	500
Fsp4HI	GCNGC	1 cut(s)	477
FspBI	CTAG	4 cut(s)	44, 74, 227, 276
GluI	GCNGC	1 cut(s)	477
HaeIII	GGCC	1 cut(s)	297
HapII	CCGG	1 cut(s)	377
Hin1II	CATG	3 cut(s)	401, 422, 629
HincII	GTYRAC	3 cut(s)	24, 38, 153
HindII	GTYRAC	3 cut(s)	24, 38, 153
HinfI	GANTC	3 cut(s)	116, 381, 403
HpaI	GTTAAC	1 cut(s)	24
HpaII	CCGG	1 cut(s)	377
HphI	GGTGA	2 cut(s)	301, 746
Hpy166II	GTNNAC	5 cut(s)	24, 38, 153, 410, 469
Hpy188I	TCNGA	3 cut(s)	139, 181, 568
Hpy188III	TCNNGA	1 cut(s)	698
Hpy8I	GTNNAC	5 cut(s)	24, 38, 153, 410, 469
HpyAV	CCTTC	7 cut(s)	59, 316, 437, 602, 611, 636, 683
HpyCH4III	ACNGT	2 cut(s)	28, 364
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	5 cut(s)	4, 290, 422, 625, 649
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 287
HpyF3I	CTNAG	6 cut(s)	18, 282, 317, 521, 535, 716
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	3 cut(s)	401, 422, 629
Ksp22I	TGATCA	1 cut(s)	145
KspAI	GTTAAC	1 cut(s)	24
Kzo9I	GATC	2 cut(s)	145, 568
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	9 cut(s)	150, 159, 186, 231, 300, 390, 465, 681, 740
Lsp1109I	GCAGC	1 cut(s)	463
LweI	GCATC	1 cut(s)	115
MaeI	CTAG	4 cut(s)	44, 74, 227, 276
MaeII	ACGT	1 cut(s)	12
MalI	GATC	2 cut(s)	147, 570
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	2 cut(s)	145, 568
MboII	GAAGA	1 cut(s)	641
MhlI	GDGCHC	1 cut(s)	397
MluCI	AATT	3 cut(s)	325, 693, 765
MlyI	GAGTC	1 cut(s)	375
MnlI	CCTC	3 cut(s)	26, 167, 598
Mph1103I	ATGCAT	1 cut(s)	424
MroXI	GAANNNNTTC	2 cut(s)	186, 693
MseI	TTAA	2 cut(s)	23, 778
MspI	CCGG	1 cut(s)	377
MspR9I	CCNGG	2 cut(s)	174, 378
Mva1269I	GAATGC	3 cut(s)	240, 247, 422
MvaI	CCWGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	2 cut(s)	59, 287
NciI	CCSGG	1 cut(s)	378
NdeII	GATC	2 cut(s)	145, 568
NlaIII	CATG	3 cut(s)	401, 422, 629
NlaIV	GGNNCC	3 cut(s)	335, 394, 502
NsiI	ATGCAT	1 cut(s)	424
NspI	RCATGY	1 cut(s)	422
PaeR7I	CTCGAG	1 cut(s)	129
PctI	GAATGC	3 cut(s)	240, 247, 422
PdmI	GAANNNNTTC	2 cut(s)	186, 693
PfeI	GAWTC	2 cut(s)	116, 403
PflMI	CCANNNNNTGG	1 cut(s)	556
PfoI	TCCNGGA	1 cut(s)	376
PkrI	GCNGC	1 cut(s)	478
PleI	GAGTC	1 cut(s)	375
PpsI	GAGTC	1 cut(s)	375
Psp1406I	AACGTT	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	3 cut(s)	335, 394, 502
PspPI	GGNCC	1 cut(s)	295
PspXI	VCTCGAGB	1 cut(s)	129
PstI	CTGCAG	1 cut(s)	292
RsaI	GTAC	2 cut(s)	256, 548
RsaNI	GTAC	2 cut(s)	255, 547
SaqAI	TTAA	2 cut(s)	23, 778
SatI	GCNGC	1 cut(s)	477
Sau3AI	GATC	2 cut(s)	145, 568
Sau96I	GGNCC	1 cut(s)	295
ScaI	AGTACT	1 cut(s)	256
SchI	GAGTC	1 cut(s)	375
ScrFI	CCNGG	2 cut(s)	174, 378
SduI	GDGCHC	1 cut(s)	397
SfaNI	GCATC	1 cut(s)	115
SfcI	CTRYAG	1 cut(s)	288
Sfr274I	CTCGAG	1 cut(s)	129
SlaI	CTCGAG	1 cut(s)	129
SmlI	CTYRAG	2 cut(s)	129, 542
SmoI	CTYRAG	2 cut(s)	129, 542
SpeI	ACTAGT	1 cut(s)	43
Sse9I	AATT	3 cut(s)	325, 693, 765
SsiI	CCGC	1 cut(s)	62
SspMI	CTAG	4 cut(s)	44, 74, 227, 276
StyD4I	CCNGG	2 cut(s)	172, 376
StyI	CCWWGG	2 cut(s)	98, 509
TaaI	ACNGT	2 cut(s)	28, 364
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	3 cut(s)	130, 493, 571
TasI	AATT	3 cut(s)	325, 693, 765
TatI	WGTACW	1 cut(s)	254
TfiI	GAWTC	2 cut(s)	116, 403
Tru1I	TTAA	2 cut(s)	23, 778
Tru9I	TTAA	2 cut(s)	23, 778
TscAI	CASTG	1 cut(s)	297
TseI	GCWGC	1 cut(s)	476
TspDTI	ATGAA	1 cut(s)	642
TspRI	CASTG	1 cut(s)	297
Van91I	CCANNNNNTGG	1 cut(s)	556
XapI	RAATTY	1 cut(s)	693
XceI	RCATGY	1 cut(s)	422
XcmI	CCANNNNNNNNNTGG	1 cut(s)	404
XhoI	CTCGAG	1 cut(s)	129
XmnI	GAANNNNTTC	2 cut(s)	186, 693
XspI	CTAG	4 cut(s)	44, 74, 227, 276
ZrmI	AGTACT	1 cut(s)	256
Zsp2I	ATGCAT	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.