Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008129

Physical Location & Seq

Genomic Coordinates Reverse (-)

32072466 .. 32072897

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g37350.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGAGAACCACAGTAACGGCTACTGTTTCACTATCAAAACCATCGACGGAAGCACCGCCGGACATGGCTCCGCCGCAGTCACCTTCACCTTGGCACTATCCGATTCCATGCCTCCTAGGCGGTCTAGTGACGATGACTATTCTCGTTATTTCTGCTGTGTTAATCTTGGCTTGCTCGTTCCGGAAGCAAAACGGAGAAGGCAGCAGCAGAGCCGACGGAGATTTGGAGCAAGGTGGCGAGTCGGTGAAGGTGTTTAAAGACAAGGTTTTGGTTATAATGGCCGGAAATGAGAACCCTACTTATTTGGCCACTCCGATTCCGATTTGCCCTACTAAAGGTACTAGTTTTGAAGAGCAATCAGAGAAGATAGGGGGAGATGATATGGAAGAGAATTCTGAGATATTGAAAGAGGCATCATCATCAACAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006521 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0006868 GO:0008150 GO:0009987 GO:0010565 GO:0010585 GO:0015711 GO:0015804 GO:0015849 GO:0016020 GO:0016021 GO:0019222 GO:0031224 GO:0031323 GO:0032879 GO:0032890 GO:0032940 GO:0033238 GO:0034762 GO:0034765 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044070 GO:0044424 GO:0044425 GO:0044464 GO:0046717 GO:0046903 GO:0046942 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051179 GO:0051234 GO:0051952 GO:0051955 GO:0062012 GO:0065007 GO:0071702 GO:0071705 GO:0080090 GO:0080143 GO:1903789 GO:1903959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

15.2

Weight (kDa)

4.62

Isoelectric Point (pI)

60.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008129)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g37350
rosa_chinensis	RchiOBHm_Chr4g0410191 RchiOBHm_Chr5g0067181 RchiOBHm_Chr7g0208061
rosa_laevigata	RLG00000003257 RLG00000008449
rosa_multiflora	Rmu_co8475945.1_g000001 Rmu_sc0000365.1_g000018
rosa_roxburghii	Rroxscaffold_3G00250830 Rroxscaffold_5G00354970
rosa_rugosa	Rorug05G0382500 Rorug07G0101100
rosa_samantha	Rh4CG171300 Rh5AG442300 Rh5BG459200 Rh5CG481400 Rh5DG474300 Rh7AG234700 Rh7BG230700 Rh7CG250400 Rh7DG241200
rosa_wichuraiana	Rw4G013250 Rw5G041320 Rw7G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	275
AccIII	TCCGGA	1 cut(s)	180
AciI	CCGC	4 cut(s)	56, 71, 74, 120
AcoI	YGGCCR	2 cut(s)	279, 306
AcsI	RAATTY	1 cut(s)	391
AfaI	GTAC	1 cut(s)	340
AfiI	CCNNNNNNNGG	1 cut(s)	335
AgsI	TTSAA	2 cut(s)	350, 406
AhlI	ACTAGT	1 cut(s)	341
Aor13HI	TCCGGA	1 cut(s)	180
AoxI	GGCC	2 cut(s)	279, 306
ApeKI	GCWGC	2 cut(s)	201, 204
ApoI	RAATTY	1 cut(s)	391
AspA2I	CCTAGG	1 cut(s)	115
AsuHPI	GGTGA	3 cut(s)	72, 78, 256
AvrII	CCTAGG	1 cut(s)	115
BalI	TGGCCA	1 cut(s)	308
BbvI	GCAGC	2 cut(s)	213, 216
BccI	CCATC	1 cut(s)	49
BceAI	ACGGC	1 cut(s)	33
BcuI	ACTAGT	1 cut(s)	341
BfaI	CTAG	3 cut(s)	116, 125, 342
BglI	GCCNNNNNGGC	1 cut(s)	117
BisI	GCNGC	3 cut(s)	74, 202, 205
BlnI	CCTAGG	1 cut(s)	115
BlsI	GCNGC	3 cut(s)	75, 203, 206
BmiI	GGNNCC	1 cut(s)	69
BmsI	GCATC	1 cut(s)	422
BsaJI	CCNNGG	2 cut(s)	89, 115
BsaWI	WCCGGW	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
BseAI	TCCGGA	1 cut(s)	180
BseDI	CCNNGG	2 cut(s)	89, 115
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseMII	CTCAG	1 cut(s)	387
BseXI	GCAGC	2 cut(s)	213, 216
BshFI	GGCC	2 cut(s)	281, 308
BsiSI	CCGG	3 cut(s)	59, 181, 282
BslI	CCNNNNNNNGG	1 cut(s)	335
BsnI	GGCC	2 cut(s)	281, 308
Bsp13I	TCCGGA	1 cut(s)	180
BspACI	CCGC	4 cut(s)	56, 71, 74, 120
BspANI	GGCC	2 cut(s)	281, 308
BspCNI	CTCAG	1 cut(s)	388
BspEI	TCCGGA	1 cut(s)	180
BspLI	GGNNCC	1 cut(s)	69
BspQI	GCTCTTC	1 cut(s)	345
BssECI	CCNNGG	2 cut(s)	89, 115
BssT1I	CCWWGG	2 cut(s)	89, 115
Bst4CI	ACNGT	2 cut(s)	13, 25
Bst6I	CTCTTC	2 cut(s)	345, 381
BstC8I	GCNNGC	1 cut(s)	172
BstDEI	CTNAG	1 cut(s)	396
BstENI	CCTNNNNNAGG	1 cut(s)	333
BstMWI	GCNNNNNNNGC	1 cut(s)	117
BstV1I	GCAGC	2 cut(s)	213, 216
BsuRI	GGCC	2 cut(s)	281, 308
Cac8I	GCNNGC	1 cut(s)	172
Csp6I	GTAC	1 cut(s)	339
CviAII	CATG	2 cut(s)	64, 108
CviJI	RGCY	6 cut(s)	20, 68, 170, 212, 281, 308
CviKI_1	RGCY	6 cut(s)	20, 68, 170, 212, 281, 308
CviQI	GTAC	1 cut(s)	339
DdeI	CTNAG	1 cut(s)	396
DraI	TTTAAA	1 cut(s)	256
EaeI	YGGCCR	2 cut(s)	279, 306
Eam1104I	CTCTTC	2 cut(s)	345, 381
EarI	CTCTTC	2 cut(s)	345, 381
EciI	GGCGGA	1 cut(s)	60
Eco130I	CCWWGG	2 cut(s)	89, 115
EcoNI	CCTNNNNNAGG	1 cut(s)	333
EcoRI	GAATTC	1 cut(s)	391
EcoT14I	CCWWGG	2 cut(s)	89, 115
ErhI	CCWWGG	2 cut(s)	89, 115
FaeI	CATG	2 cut(s)	67, 111
FaiI	YATR	4 cut(s)	65, 109, 275, 383
FatI	CATG	2 cut(s)	63, 107
Fnu4HI	GCNGC	3 cut(s)	74, 202, 205
Fsp4HI	GCNGC	3 cut(s)	74, 202, 205
FspBI	CTAG	3 cut(s)	116, 125, 342
GluI	GCNGC	3 cut(s)	74, 202, 205
HaeIII	GGCC	2 cut(s)	281, 308
HapII	CCGG	3 cut(s)	59, 181, 282
Hin1II	CATG	2 cut(s)	67, 111
HinfI	GANTC	3 cut(s)	103, 239, 316
HpaII	CCGG	3 cut(s)	59, 181, 282
HphI	GGTGA	3 cut(s)	72, 78, 256
Hpy188I	TCNGA	5 cut(s)	102, 315, 321, 361, 397
Hpy188III	TCNNGA	1 cut(s)	181
Hpy99I	CGWCG	2 cut(s)	49, 218
HpyAV	CCTTC	3 cut(s)	93, 191, 241
HpyCH4III	ACNGT	2 cut(s)	13, 25
HpyF10VI	GCNNNNNNNGC	1 cut(s)	117
HpyF3I	CTNAG	1 cut(s)	396
Hsp92II	CATG	2 cut(s)	67, 111
Kpn2I	TCCGGA	1 cut(s)	180
LguI	GCTCTTC	1 cut(s)	345
LmnI	GCTCC	2 cut(s)	73, 226
LpnPI	CCDG	3 cut(s)	72, 194, 295
Lsp1109I	GCAGC	2 cut(s)	213, 216
LweI	GCATC	1 cut(s)	422
MaeI	CTAG	3 cut(s)	116, 125, 342
MaeIII	GTNAC	3 cut(s)	13, 78, 127
MboII	GAAGA	3 cut(s)	362, 376, 398
MlsI	TGGCCA	1 cut(s)	308
MluCI	AATT	1 cut(s)	391
MluNI	TGGCCA	1 cut(s)	308
MlyI	GAGTC	1 cut(s)	248
MnlI	CCTC	2 cut(s)	122, 403
Mox20I	TGGCCA	1 cut(s)	308
MroI	TCCGGA	1 cut(s)	180
MscI	TGGCCA	1 cut(s)	308
MseI	TTAA	2 cut(s)	161, 255
Msp20I	TGGCCA	1 cut(s)	308
MspI	CCGG	3 cut(s)	59, 181, 282
MwoI	GCNNNNNNNGC	1 cut(s)	117
NlaIII	CATG	2 cut(s)	67, 111
NlaIV	GGNNCC	1 cut(s)	69
NmuCI	GTSAC	2 cut(s)	78, 127
PciSI	GCTCTTC	1 cut(s)	345
PfeI	GAWTC	2 cut(s)	103, 316
PkrI	GCNGC	3 cut(s)	75, 203, 206
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
PsiI	TTATAA	1 cut(s)	275
PspN4I	GGNNCC	1 cut(s)	69
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
SapI	GCTCTTC	1 cut(s)	345
SaqAI	TTAA	2 cut(s)	161, 255
SatI	GCNGC	3 cut(s)	74, 202, 205
SchI	GAGTC	1 cut(s)	248
SetI	ASST	6 cut(s)	85, 91, 235, 252, 267, 340
SfaNI	GCATC	1 cut(s)	422
SpeI	ACTAGT	1 cut(s)	341
Sse9I	AATT	1 cut(s)	391
SsiI	CCGC	4 cut(s)	56, 71, 74, 120
SspMI	CTAG	3 cut(s)	116, 125, 342
StyI	CCWWGG	2 cut(s)	89, 115
TaaI	ACNGT	2 cut(s)	13, 25
TaqI	TCGA	1 cut(s)	44
TasI	AATT	1 cut(s)	391
TauI	GCSGC	1 cut(s)	76
TfiI	GAWTC	2 cut(s)	103, 316
Tru1I	TTAA	2 cut(s)	161, 255
Tru9I	TTAA	2 cut(s)	161, 255
TseFI	GTSAC	2 cut(s)	78, 127
TseI	GCWGC	2 cut(s)	201, 204
Tsp45I	GTSAC	2 cut(s)	78, 127
TspGWI	ACGGA	3 cut(s)	62, 207, 231
XagI	CCTNNNNNAGG	1 cut(s)	333
XapI	RAATTY	1 cut(s)	391
XmaJI	CCTAGG	1 cut(s)	115
XspI	CTAG	3 cut(s)	116, 125, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.