Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008129

Physical Location & Seq

Genomic Coordinates Reverse (-)

7995410 .. 7995918

Gene Structure 509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0101100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGGGGCGGATTGGGGACCGGTGATTGTAGCGGTGGTGCTGTTCGTTCTGTTGACTCCTGGGCTCATGTTTCAGATTCCGGCCAAGGGGAGGGTGGCGGAGTTTGGGAATATGCAGACAAGTCTTCCCTCCATAGTTGTACACGCCCTCGTCTACTTCGGCCTGCTCACCGTCCTCCTTATTGCTATAGGTGTTCATATCTATACTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006521 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0006868 GO:0008150 GO:0009987 GO:0010565 GO:0010585 GO:0015711 GO:0015804 GO:0015849 GO:0016020 GO:0016021 GO:0019222 GO:0031224 GO:0031323 GO:0032879 GO:0032890 GO:0032940 GO:0033238 GO:0034762 GO:0034765 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044070 GO:0044424 GO:0044425 GO:0044464 GO:0046717 GO:0046903 GO:0046942 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051179 GO:0051234 GO:0051952 GO:0051955 GO:0062012 GO:0065007 GO:0071702 GO:0071705 GO:0080090 GO:0080143 GO:1903789 GO:1903959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

70

Amino Acids

7.44

Weight (kDa)

6.69

Isoelectric Point (pI)

13.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3339	PF11820	3 - 68	9.4e-33	Protein of unknown function (DUF3339)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0008129)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g37350
rosa_chinensis	RchiOBHm_Chr4g0410191 RchiOBHm_Chr5g0067181 RchiOBHm_Chr7g0208061
rosa_laevigata	RLG00000003257 RLG00000008449
rosa_multiflora	Rmu_co8475945.1_g000001 Rmu_sc0000365.1_g000018
rosa_roxburghii	Rroxscaffold_3G00250830 Rroxscaffold_5G00354970
rosa_rugosa	Rorug05G0382500 Rorug07G0101100
rosa_samantha	Rh4CG171300 Rh5AG442300 Rh5BG459200 Rh5CG481400 Rh5DG474300 Rh7AG234700 Rh7BG230700 Rh7CG250400 Rh7DG241200
rosa_wichuraiana	Rw4G013250 Rw5G041320 Rw7G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	153
AciI	CCGC	3 cut(s)	8, 32, 98
AcoI	YGGCCR	1 cut(s)	81
AfaI	GTAC	1 cut(s)	141
AfiI	CCNNNNNNNGG	2 cut(s)	86, 90
AgeI	ACCGGT	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	58
AoxI	GGCC	2 cut(s)	81, 160
AsiGI	ACCGGT	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	17
AsuHPI	GGTGA	2 cut(s)	34, 160
AvaII	GGWCC	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	66
BbsI	GAAGAC	1 cut(s)	116
BciT130I	CCWGG	1 cut(s)	60
BfmI	CTRYAG	1 cut(s)	186
Bme1390I	CCNGG	1 cut(s)	60
Bme18I	GGWCC	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	17
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	1 cut(s)	60
BpiI	GAAGAC	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	59, 84
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 90
Bse118I	RCCGGY	1 cut(s)	19
Bse1I	ACTGG	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	2 cut(s)	59, 84
BseLI	CCNNNNNNNGG	2 cut(s)	86, 90
BseNI	ACTGG	1 cut(s)	211
BshFI	GGCC	2 cut(s)	83, 162
BshTI	ACCGGT	1 cut(s)	19
BsiSI	CCGG	2 cut(s)	20, 80
BslFI	GGGAC	1 cut(s)	30
BslI	CCNNNNNNNGG	2 cut(s)	86, 90
BsmFI	GGGAC	1 cut(s)	30
BsnI	GGCC	2 cut(s)	83, 162
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp1407I	TGTACA	1 cut(s)	139
BspACI	CCGC	3 cut(s)	8, 32, 98
BspANI	GGCC	2 cut(s)	83, 162
BspLI	GGNNCC	1 cut(s)	18
BsrFI	RCCGGY	1 cut(s)	19
BsrGI	TGTACA	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	211
BssAI	RCCGGY	1 cut(s)	19
BssECI	CCNNGG	2 cut(s)	59, 84
BssT1I	CCWWGG	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	1 cut(s)	172
BstAUI	TGTACA	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	164
BstNI	CCWGG	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	58
BstSFI	CTRYAG	1 cut(s)	186
BstV2I	GAAGAC	1 cut(s)	116
BsuRI	GGCC	2 cut(s)	83, 162
Cac8I	GCNNGC	1 cut(s)	164
Cfr10I	RCCGGY	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	140
CspAI	ACCGGT	1 cut(s)	19
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	4 cut(s)	64, 83, 162, 210
CviKI_1	RGCY	4 cut(s)	64, 83, 162, 210
CviQI	GTAC	1 cut(s)	140
EaeI	YGGCCR	1 cut(s)	81
EciI	GGCGGA	2 cut(s)	23, 113
Eco130I	CCWWGG	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	17
EcoRII	CCWGG	1 cut(s)	58
EcoT14I	CCWWGG	1 cut(s)	84
EcoT38I	GRGCYC	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	1 cut(s)	70
FaiI	YATR	6 cut(s)	68, 113, 134, 188, 198, 204
FaqI	GGGAC	1 cut(s)	30
FatI	CATG	1 cut(s)	66
FblI	GTMKAC	1 cut(s)	153
FriOI	GRGCYC	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	83, 162
HapII	CCGG	2 cut(s)	20, 80
Hin1II	CATG	1 cut(s)	70
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HinfI	GANTC	2 cut(s)	55, 76
HpaII	CCGG	2 cut(s)	20, 80
HphI	GGTGA	2 cut(s)	34, 160
Hpy166II	GTNNAC	3 cut(s)	54, 142, 154
Hpy188I	TCNGA	1 cut(s)	75
Hpy8I	GTNNAC	3 cut(s)	54, 142, 154
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4V	TGCA	1 cut(s)	115
Hsp92II	CATG	1 cut(s)	70
LpnPI	CCDG	6 cut(s)	33, 45, 72, 93, 176, 192
MboII	GAAGA	1 cut(s)	116
MhlI	GDGCHC	1 cut(s)	66
MlyI	GAGTC	1 cut(s)	49
MnlI	CCTC	4 cut(s)	84, 139, 158, 185
MspI	CCGG	2 cut(s)	20, 80
MspR9I	CCNGG	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	60
NlaIII	CATG	1 cut(s)	70
NlaIV	GGNNCC	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	76
PinAI	ACCGGT	1 cut(s)	19
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	1 cut(s)	17
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
Sau96I	GGNCC	1 cut(s)	17
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	1 cut(s)	193
SfcI	CTRYAG	1 cut(s)	186
SinI	GGWCC	1 cut(s)	17
SsiI	CCGC	3 cut(s)	8, 32, 98
StyD4I	CCNGG	1 cut(s)	58
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	172
TatI	WGTACW	1 cut(s)	139
TfiI	GAWTC	1 cut(s)	76
TspDTI	ATGAA	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	17
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XmiI	GTMKAC	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.