Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008129

Physical Location & Seq

Genomic Coordinates Reverse (-)

51847111 .. 51866206

Gene Structure 19096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0382500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGATATCAATAGAATGAGACCATCATTGCGTCCAGGTCTAAGAGATCCTTCAGCTCAAACAAATGCAAGGAATGGTCACGGTCCAAAGAGTAGAATATATCGTCGTACTAGAAGTGCCCCTCTTGCTAATTACGGACCCGTAGAGGCAAAATGCGTTGCCGCAGTTCAACAACGTTCTCAATCCATTATGCACTTGAGTTTTGTTAAAGTAGCTATATTCTTGACTGTCTACTTAGGAGTGGGAACTATGTGCTTCTACTTCGTCAGGCACCAGCTCGAGGGAGACAAGACAAAAGCAGTTCTTGATGCTGTTTATTTCTGTGTTGTGACCATGACCACTCTCGGATACGGAGACCTAGTGCCCAACAGCACACTAGCGAAACTACTGGCTTGTGCTTTTGTGTTTACAGGAATGGCTCTTGTCGCATTGATCTTGAGCAAAGCAGCAGACTATTTGGTAGAGAGGCAAGAAATGTTGCTTACCAAAGCCCTGCATGGGCATCAGAAGTTTGGTCCAATTGAAGTCCATAAAGAAGTCGAGCCTAAGAGTGTGAGGAACAAATGTGTTACGGTCTTTATCCTTCTTTTGGTTCTTATGGCTTCTGGCACGATCTTCCTTGCTAAAGTTGAGAAATTCGACCTTGTGGATGCATTTTATTGCGTTTGTTGCACCATCACAAGCCTGGGGTATGGAGATAAGAGCTTCTCAACTGAAGCCGGGCGTGTTTTTGCAGTGTTCTGGATATTGGCAAGTACCACCTGTTTGGCTCAGTTTTTCCTCTACATTGCTGAGCTAAACACCCAGCATAGACAAAAGGCATTGATTAACTTGGTTCTTACTCGTCAAGTTACCAAAGTTGATTTGGAGGCAGCTGATCTTGATGACGATGGGGTTGTTGGGGCTGCTGAGTTTGTCATATATAAACTCAAAGAGATGGGAAAGATCAACCAAGAAGATGTCAGACTTGTAATGAAGGAGTTTGAAGCTCTTGATGTCGACCAGTCTGGAACCTTGTCGATTAAAGATGTAACGCTTGCTCAATCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006521 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0006868 GO:0008150 GO:0009987 GO:0010565 GO:0010585 GO:0015711 GO:0015804 GO:0015849 GO:0016020 GO:0016021 GO:0019222 GO:0031224 GO:0031323 GO:0032879 GO:0032890 GO:0032940 GO:0033238 GO:0034762 GO:0034765 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044070 GO:0044424 GO:0044425 GO:0044464 GO:0046717 GO:0046903 GO:0046942 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051179 GO:0051234 GO:0051952 GO:0051955 GO:0062012 GO:0065007 GO:0071702 GO:0071705 GO:0080090 GO:0080143 GO:1903789 GO:1903959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

350

Amino Acids

38.77

Weight (kDa)

8.63

Isoelectric Point (pI)

29.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	73 - 153	1e-05	Ion transport protein
Ion_trans_2	PF07885	74 - 154	1.8e-16	Ion channel
Ion_trans_2	PF07885	195 - 267	1.8e-14	Ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008129)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g37350
rosa_chinensis	RchiOBHm_Chr4g0410191 RchiOBHm_Chr5g0067181 RchiOBHm_Chr7g0208061
rosa_laevigata	RLG00000003257 RLG00000008449
rosa_multiflora	Rmu_co8475945.1_g000001 Rmu_sc0000365.1_g000018
rosa_roxburghii	Rroxscaffold_3G00250830 Rroxscaffold_5G00354970
rosa_rugosa	Rorug05G0382500 Rorug07G0101100
rosa_samantha	Rh4CG171300 Rh5AG442300 Rh5BG459200 Rh5CG481400 Rh5DG474300 Rh7AG234700 Rh7BG230700 Rh7CG250400 Rh7DG241200
rosa_wichuraiana	Rw4G013250 Rw5G041320 Rw7G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	270
AccI	GTMKAC	2 cut(s)	231, 999
AciI	CCGC	1 cut(s)	162
AclI	AACGTT	1 cut(s)	175
AclWI	GGATC	1 cut(s)	41
AcsI	RAATTY	1 cut(s)	635
AcuI	CTGAAG	2 cut(s)	36, 735
AfaI	GTAC	2 cut(s)	109, 757
AfiI	CCNNNNNNNGG	3 cut(s)	280, 498, 589
AgsI	TTSAA	3 cut(s)	170, 524, 986
AjnI	CCWGG	2 cut(s)	34, 684
AluBI	AGCT	7 cut(s)	56, 215, 277, 705, 796, 875, 989
AluI	AGCT	7 cut(s)	56, 215, 277, 705, 796, 875, 989
Alw26I	GTCTC	3 cut(s)	13, 279, 348
AlwI	GGATC	1 cut(s)	41
Ama87I	CYCGRG	1 cut(s)	278
ApeKI	GCWGC	3 cut(s)	446, 872, 905
ApoI	RAATTY	1 cut(s)	635
AspS9I	GGNCC	3 cut(s)	83, 137, 515
AsuC2I	CCSGG	1 cut(s)	721
AvaI	CYCGRG	1 cut(s)	278
AvaII	GGWCC	3 cut(s)	83, 137, 515
BaeGI	GKGCMC	2 cut(s)	121, 366
BanI	GGYRCC	1 cut(s)	270
BbvI	GCAGC	3 cut(s)	458, 884, 892
BccI	CCATC	4 cut(s)	31, 683, 884, 931
BciT130I	CCWGG	2 cut(s)	36, 686
BciVI	GTATCC	1 cut(s)	341
BcnI	CCSGG	1 cut(s)	721
BcoDI	GTCTC	3 cut(s)	13, 279, 348
BfaI	CTAG	3 cut(s)	111, 359, 377
BfuI	GTATCC	1 cut(s)	341
BisI	GCNGC	4 cut(s)	162, 447, 873, 906
BlpI	GCTNAGC	1 cut(s)	792
BlsI	GCNGC	4 cut(s)	163, 448, 874, 907
Bme1390I	CCNGG	3 cut(s)	36, 686, 721
Bme18I	GGWCC	3 cut(s)	83, 137, 515
BmeT110I	CYCGRG	1 cut(s)	278
BmgT120I	GGNCC	3 cut(s)	83, 137, 515
BmiI	GGNNCC	3 cut(s)	139, 272, 1012
BmrFI	CCNGG	3 cut(s)	36, 686, 721
BmsI	GCATC	3 cut(s)	298, 511, 640
Bpu1102I	GCTNAGC	1 cut(s)	792
BpuEI	CTTGAG	2 cut(s)	217, 457
BpuMI	CCSGG	1 cut(s)	721
BsaI	GGTCTC	2 cut(s)	13, 348
BsaJI	CCNNGG	1 cut(s)	685
BsaXI	ACNNNNNCTCC	2 cut(s)	345, 375
Bsc4I	CCNNNNNNNGG	3 cut(s)	280, 498, 589
Bse1I	ACTGG	2 cut(s)	393, 1003
Bse3DI	GCAATG	2 cut(s)	26, 786
BseBI	CCWGG	2 cut(s)	36, 686
BseDI	CCNNGG	1 cut(s)	685
BseGI	GGATG	1 cut(s)	655
BseLI	CCNNNNNNNGG	3 cut(s)	280, 498, 589
BseMI	GCAATG	2 cut(s)	26, 786
BseMII	CTCAG	3 cut(s)	783, 785, 900
BseNI	ACTGG	2 cut(s)	393, 1003
BseSI	GKGCMC	2 cut(s)	121, 366
BseXI	GCAGC	3 cut(s)	458, 884, 892
BseYI	CCCAGC	1 cut(s)	804
BshNI	GGYRCC	1 cut(s)	270
BsiHKCI	CYCGRG	1 cut(s)	278
BsiSI	CCGG	1 cut(s)	720
BslI	CCNNNNNNNGG	3 cut(s)	280, 498, 589
BsmAI	GTCTC	3 cut(s)	13, 279, 348
Bso31I	GGTCTC	2 cut(s)	13, 348
BsoBI	CYCGRG	1 cut(s)	278
Bsp1286I	GDGCHC	2 cut(s)	121, 366
Bsp143I	GATC	5 cut(s)	46, 432, 612, 877, 945
Bsp1720I	GCTNAGC	1 cut(s)	792
BspACI	CCGC	1 cut(s)	162
BspCNI	CTCAG	3 cut(s)	784, 784, 901
BspLI	GGNNCC	3 cut(s)	139, 272, 1012
BspPI	GGATC	1 cut(s)	41
BspT107I	GGYRCC	1 cut(s)	270
BspTNI	GGTCTC	2 cut(s)	13, 348
BsrDI	GCAATG	2 cut(s)	26, 786
BsrI	ACTGG	2 cut(s)	393, 1003
BssECI	CCNNGG	1 cut(s)	685
BssMI	GATC	5 cut(s)	46, 432, 612, 877, 945
Bst2UI	CCWGG	2 cut(s)	36, 686
Bst4CI	ACNGT	3 cut(s)	83, 229, 574
BstC8I	GCNNGC	1 cut(s)	1038
BstDEI	CTNAG	6 cut(s)	41, 235, 546, 771, 792, 909
BstF5I	GGATG	1 cut(s)	655
BstKTI	GATC	5 cut(s)	49, 435, 615, 880, 948
BstMAI	GTCTC	3 cut(s)	13, 279, 348
BstMBI	GATC	5 cut(s)	46, 432, 612, 877, 945
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 425, 669
BstNI	CCWGG	2 cut(s)	36, 686
BstSCI	CCNGG	3 cut(s)	34, 684, 719
BstSLI	GKGCMC	2 cut(s)	121, 366
BstV1I	GCAGC	3 cut(s)	458, 884, 892
BstX2I	RGATCY	1 cut(s)	46
BstXI	CCANNNNNNTGG	1 cut(s)	766
BstYI	RGATCY	1 cut(s)	46
BsuI	GTATCC	1 cut(s)	341
BtsCI	GGATG	1 cut(s)	655
BtsI	GCAGTG	1 cut(s)	741
BtsIMutI	CAGTG	1 cut(s)	741
Cac8I	GCNNGC	1 cut(s)	1038
Cfr13I	GGNCC	3 cut(s)	83, 137, 515
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	2 cut(s)	108, 756
CviAII	CATG	2 cut(s)	334, 497
CviQI	GTAC	2 cut(s)	108, 756
DdeI	CTNAG	6 cut(s)	41, 235, 546, 771, 792, 909
DpnI	GATC	5 cut(s)	48, 434, 614, 879, 947
DpnII	GATC	5 cut(s)	46, 432, 612, 877, 945
Eco31I	GGTCTC	2 cut(s)	13, 348
Eco32I	GATATC	1 cut(s)	7
Eco47I	GGWCC	3 cut(s)	83, 137, 515
Eco57I	CTGAAG	2 cut(s)	36, 735
Eco88I	CYCGRG	1 cut(s)	278
EcoRII	CCWGG	2 cut(s)	34, 684
EcoRV	GATATC	1 cut(s)	7
EcoT22I	ATGCAT	1 cut(s)	655
FaeI	CATG	2 cut(s)	337, 500
FalI	AAGNNNNNCTT	4 cut(s)	34, 66, 288, 320
FatI	CATG	2 cut(s)	333, 496
FblI	GTMKAC	2 cut(s)	231, 999
Fnu4HI	GCNGC	4 cut(s)	162, 447, 873, 906
FokI	GGATG	1 cut(s)	662
Fsp4HI	GCNGC	4 cut(s)	162, 447, 873, 906
FspBI	CTAG	3 cut(s)	111, 359, 377
GluI	GCNGC	4 cut(s)	162, 447, 873, 906
GsaI	CCCAGC	1 cut(s)	808
HapII	CCGG	1 cut(s)	720
HgaI	GACGC	1 cut(s)	20
Hin1II	CATG	2 cut(s)	337, 500
HincII	GTYRAC	1 cut(s)	1000
HindII	GTYRAC	1 cut(s)	1000
HpaII	CCGG	1 cut(s)	720
Hpy166II	GTNNAC	3 cut(s)	232, 408, 1000
Hpy188I	TCNGA	3 cut(s)	347, 507, 965
Hpy188III	TCNNGA	7 cut(s)	223, 305, 436, 742, 881, 992, 1008
Hpy8I	GTNNAC	3 cut(s)	232, 408, 1000
Hpy99I	CGWCG	1 cut(s)	108
HpyAV	CCTTC	3 cut(s)	60, 593, 970
HpyCH4III	ACNGT	3 cut(s)	83, 229, 574
HpyCH4IV	ACGT	1 cut(s)	175
HpyCH4V	TGCA	6 cut(s)	68, 193, 496, 653, 672, 734
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 425, 669
HpyF3I	CTNAG	6 cut(s)	41, 235, 546, 771, 792, 909
HpySE526I	ACGT	1 cut(s)	175
Hsp92II	CATG	2 cut(s)	337, 500
Kzo9I	GATC	5 cut(s)	46, 432, 612, 877, 945
Lsp1109I	GCAGC	3 cut(s)	458, 884, 892
LweI	GCATC	3 cut(s)	298, 511, 640
MaeI	CTAG	3 cut(s)	111, 359, 377
MaeII	ACGT	1 cut(s)	175
MaeIII	GTNAC	5 cut(s)	77, 328, 568, 850, 1030
MalI	GATC	5 cut(s)	48, 434, 614, 879, 947
MboI	GATC	5 cut(s)	46, 432, 612, 877, 945
MboII	GAAGA	2 cut(s)	607, 968
MfeI	CAATTG	1 cut(s)	519
MflI	RGATCY	1 cut(s)	46
MhlI	GDGCHC	2 cut(s)	121, 366
MluCI	AATT	3 cut(s)	130, 519, 635
MnlI	CCTC	7 cut(s)	132, 139, 274, 459, 549, 791, 862
Mph1103I	ATGCAT	1 cut(s)	655
MseI	TTAA	4 cut(s)	207, 828, 1023, 1051
MspA1I	CMGCKG	1 cut(s)	875
MspI	CCGG	1 cut(s)	720
MspR9I	CCNGG	3 cut(s)	36, 686, 721
MunI	CAATTG	1 cut(s)	519
MvaI	CCWGG	2 cut(s)	36, 686
MwoI	GCNNNNNNNGC	3 cut(s)	125, 425, 669
NciI	CCSGG	1 cut(s)	721
NdeII	GATC	5 cut(s)	46, 432, 612, 877, 945
NlaIII	CATG	2 cut(s)	337, 500
NlaIV	GGNNCC	3 cut(s)	139, 272, 1012
NmuCI	GTSAC	2 cut(s)	77, 328
NsiI	ATGCAT	1 cut(s)	655
PaeR7I	CTCGAG	1 cut(s)	278
PkrI	GCNGC	4 cut(s)	163, 448, 874, 907
Psp1406I	AACGTT	1 cut(s)	175
Psp6I	CCWGG	2 cut(s)	34, 684
PspFI	CCCAGC	1 cut(s)	804
PspGI	CCWGG	2 cut(s)	34, 684
PspN4I	GGNNCC	3 cut(s)	139, 272, 1012
PspPI	GGNCC	3 cut(s)	83, 137, 515
PspXI	VCTCGAGB	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	46
PvuII	CAGCTG	1 cut(s)	875
RsaI	GTAC	2 cut(s)	109, 757
RsaNI	GTAC	2 cut(s)	108, 756
SalI	GTCGAC	1 cut(s)	998
SaqAI	TTAA	4 cut(s)	207, 828, 1023, 1051
SatI	GCNGC	4 cut(s)	162, 447, 873, 906
Sau3AI	GATC	5 cut(s)	46, 432, 612, 877, 945
Sau96I	GGNCC	3 cut(s)	83, 137, 515
ScrFI	CCNGG	3 cut(s)	36, 686, 721
SduI	GDGCHC	2 cut(s)	121, 366
SfaNI	GCATC	3 cut(s)	298, 511, 640
Sfr274I	CTCGAG	1 cut(s)	278
SinI	GGWCC	3 cut(s)	83, 137, 515
SlaI	CTCGAG	1 cut(s)	278
SmlI	CTYRAG	3 cut(s)	196, 278, 436
SmoI	CTYRAG	3 cut(s)	196, 278, 436
Sse9I	AATT	3 cut(s)	130, 519, 635
SsiI	CCGC	1 cut(s)	162
SspMI	CTAG	3 cut(s)	111, 359, 377
StyD4I	CCNGG	3 cut(s)	34, 684, 719
TaaI	ACNGT	3 cut(s)	83, 229, 574
TaiI	ACGT	1 cut(s)	178
TaqI	TCGA	5 cut(s)	279, 540, 639, 999, 1019
TasI	AATT	3 cut(s)	130, 519, 635
TauI	GCSGC	1 cut(s)	164
Tru1I	TTAA	4 cut(s)	207, 828, 1023, 1051
Tru9I	TTAA	4 cut(s)	207, 828, 1023, 1051
TscAI	CASTG	1 cut(s)	741
TseFI	GTSAC	2 cut(s)	77, 328
TseI	GCWGC	3 cut(s)	446, 872, 905
Tsp45I	GTSAC	2 cut(s)	77, 328
TspDTI	ATGAA	1 cut(s)	989
TspGWI	ACGGA	2 cut(s)	150, 366
TspRI	CASTG	1 cut(s)	741
VpaK11BI	GGWCC	3 cut(s)	83, 137, 515
XapI	RAATTY	1 cut(s)	635
XcmI	CCANNNNNNNNNTGG	2 cut(s)	682, 862
XhoI	CTCGAG	1 cut(s)	278
XmiI	GTMKAC	2 cut(s)	231, 999
XspI	CTAG	3 cut(s)	111, 359, 377
Zsp2I	ATGCAT	1 cut(s)	655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.