Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008129

Physical Location & Seq

Genomic Coordinates Forward (+)

46206245 .. 46206676

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003257

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGAGTACCACTGTAACGGCTACTATTTCACCAACAAAACTACCTTCGACGGAAGCACCACCAGACATGGCTCCGCTGGTTTCACCTTGGCACTCTCCAATCCCATACCTCTTAGGTGGTCTAGTGACGATGGCTATTCTTGTTGTTTGTGCTCTCTTGATCTTGGCTTGCTCATTTTGGAAGCGACACGGAGGAGGCAGCAGTGCCAATAGAGATTTGGAACCGGGTGGGAATTCTGTGAAGGTGTTTAAAGACAAGGTTTTGGTTATAATGGCCGGAAATGAGAACCCTACTTACTTGGCCACCCCGATTCCGATTTGTCATACTAAAAGTACTAGTTTTGAAGAGGAATCAGAGAAGATAGGAGGAGATGATAAGGAAGAGAACTATGAGAAATCAAAAGAGGCAGCATCATCAACATCAGCGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006521 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0006868 GO:0008150 GO:0009987 GO:0010565 GO:0010585 GO:0015711 GO:0015804 GO:0015849 GO:0016020 GO:0016021 GO:0019222 GO:0031224 GO:0031323 GO:0032879 GO:0032890 GO:0032940 GO:0033238 GO:0034762 GO:0034765 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044070 GO:0044424 GO:0044425 GO:0044464 GO:0046717 GO:0046903 GO:0046942 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051179 GO:0051234 GO:0051952 GO:0051955 GO:0062012 GO:0065007 GO:0071702 GO:0071705 GO:0080090 GO:0080143 GO:1903789 GO:1903959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

15.17

Weight (kDa)

5.32

Isoelectric Point (pI)

53.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008129)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g37350
rosa_chinensis	RchiOBHm_Chr4g0410191 RchiOBHm_Chr5g0067181 RchiOBHm_Chr7g0208061
rosa_laevigata	RLG00000003257 RLG00000008449
rosa_multiflora	Rmu_co8475945.1_g000001 Rmu_sc0000365.1_g000018
rosa_roxburghii	Rroxscaffold_3G00250830 Rroxscaffold_5G00354970
rosa_rugosa	Rorug05G0382500 Rorug07G0101100
rosa_samantha	Rh4CG171300 Rh5AG442300 Rh5BG459200 Rh5CG481400 Rh5DG474300 Rh7AG234700 Rh7BG230700 Rh7CG250400 Rh7DG241200
rosa_wichuraiana	Rw4G013250 Rw5G041320 Rw7G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	269
AciI	CCGC	1 cut(s)	74
AcoI	YGGCCR	2 cut(s)	273, 300
AcsI	RAATTY	1 cut(s)	232
AfaI	GTAC	2 cut(s)	7, 334
AgsI	TTSAA	1 cut(s)	344
AhlI	ACTAGT	1 cut(s)	335
AluBI	AGCT	1 cut(s)	429
AluI	AGCT	1 cut(s)	429
Alw21I	GWGCWC	1 cut(s)	154
AoxI	GGCC	2 cut(s)	273, 300
ApeKI	GCWGC	2 cut(s)	198, 407
ApoI	RAATTY	1 cut(s)	232
AsuC2I	CCSGG	1 cut(s)	225
AsuHPI	GGTGA	2 cut(s)	21, 75
BalI	TGGCCA	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	2 cut(s)	210, 419
BccI	CCATC	1 cut(s)	124
BceAI	ACGGC	1 cut(s)	33
BcnI	CCSGG	1 cut(s)	225
BcuI	ACTAGT	1 cut(s)	335
BfaI	CTAG	3 cut(s)	122, 336, 430
BisI	GCNGC	2 cut(s)	199, 408
BlsI	GCNGC	2 cut(s)	200, 409
BmcAI	AGTACT	1 cut(s)	334
Bme1390I	CCNGG	1 cut(s)	225
BmiI	GGNNCC	2 cut(s)	72, 222
BmrFI	CCNGG	1 cut(s)	225
BmsI	GCATC	1 cut(s)	419
BpuMI	CCSGG	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	86
BseDI	CCNNGG	1 cut(s)	86
BseRI	GAGGAG	2 cut(s)	207, 381
BseXI	GCAGC	2 cut(s)	210, 419
BshFI	GGCC	2 cut(s)	275, 302
BsiHKAI	GWGCWC	1 cut(s)	154
BsiSI	CCGG	2 cut(s)	224, 276
BsnI	GGCC	2 cut(s)	275, 302
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	1 cut(s)	159
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	2 cut(s)	275, 302
BspLI	GGNNCC	2 cut(s)	72, 222
BssECI	CCNNGG	1 cut(s)	86
BssMI	GATC	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	86
Bst4CI	ACNGT	1 cut(s)	13
Bst6I	CTCTTC	2 cut(s)	339, 375
BstC8I	GCNNGC	2 cut(s)	169, 427
BstDEI	CTNAG	1 cut(s)	112
BstKTI	GATC	1 cut(s)	162
BstMBI	GATC	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	223
BstV1I	GCAGC	2 cut(s)	210, 419
BsuRI	GGCC	2 cut(s)	275, 302
BtsI	GCAGTG	1 cut(s)	208
BtsIMutI	CAGTG	2 cut(s)	9, 208
Cac8I	GCNNGC	2 cut(s)	169, 427
Csp6I	GTAC	2 cut(s)	6, 333
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	7 cut(s)	20, 71, 134, 167, 275, 302, 429
CviKI_1	RGCY	7 cut(s)	20, 71, 134, 167, 275, 302, 429
CviQI	GTAC	2 cut(s)	6, 333
DdeI	CTNAG	1 cut(s)	112
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
DraI	TTTAAA	1 cut(s)	250
EaeI	YGGCCR	2 cut(s)	273, 300
Eam1104I	CTCTTC	2 cut(s)	339, 375
EarI	CTCTTC	2 cut(s)	339, 375
Eco130I	CCWWGG	1 cut(s)	86
EcoRI	GAATTC	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	86
FaeI	CATG	1 cut(s)	70
FaiI	YATR	5 cut(s)	68, 106, 269, 324, 390
FatI	CATG	1 cut(s)	66
Fnu4HI	GCNGC	2 cut(s)	199, 408
Fsp4HI	GCNGC	2 cut(s)	199, 408
FspBI	CTAG	3 cut(s)	122, 336, 430
GluI	GCNGC	2 cut(s)	199, 408
HaeIII	GGCC	2 cut(s)	275, 302
HapII	CCGG	2 cut(s)	224, 276
Hin1II	CATG	1 cut(s)	70
HinfI	GANTC	2 cut(s)	310, 350
HpaII	CCGG	2 cut(s)	224, 276
HphI	GGTGA	2 cut(s)	21, 75
Hpy188I	TCNGA	2 cut(s)	315, 355
Hpy188III	TCNNGA	1 cut(s)	157
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	2 cut(s)	54, 235
HpyCH4III	ACNGT	1 cut(s)	13
HpyF3I	CTNAG	1 cut(s)	112
Hsp92II	CATG	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	159
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	4 cut(s)	62, 75, 237, 289
Lsp1109I	GCAGC	2 cut(s)	210, 419
LweI	GCATC	1 cut(s)	419
MaeI	CTAG	3 cut(s)	122, 336, 430
MaeIII	GTNAC	2 cut(s)	13, 124
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MboII	GAAGA	3 cut(s)	356, 370, 392
MhlI	GDGCHC	1 cut(s)	154
MlsI	TGGCCA	1 cut(s)	302
MluCI	AATT	1 cut(s)	232
MluNI	TGGCCA	1 cut(s)	302
MnlI	CCTC	6 cut(s)	119, 185, 188, 340, 359, 397
Mox20I	TGGCCA	1 cut(s)	302
MscI	TGGCCA	1 cut(s)	302
MseI	TTAA	1 cut(s)	249
Msp20I	TGGCCA	1 cut(s)	302
MspA1I	CMGCKG	1 cut(s)	76
MspI	CCGG	2 cut(s)	224, 276
MspR9I	CCNGG	1 cut(s)	225
NciI	CCSGG	1 cut(s)	225
NdeII	GATC	1 cut(s)	159
NlaIII	CATG	1 cut(s)	70
NlaIV	GGNNCC	2 cut(s)	72, 222
NmuCI	GTSAC	1 cut(s)	124
PfeI	GAWTC	2 cut(s)	310, 350
PkrI	GCNGC	2 cut(s)	200, 409
PsiI	TTATAA	1 cut(s)	269
PspN4I	GGNNCC	2 cut(s)	72, 222
PsrI	GAACNNNNNNTAC	2 cut(s)	278, 310
RsaI	GTAC	2 cut(s)	7, 334
RsaNI	GTAC	2 cut(s)	6, 333
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	2 cut(s)	199, 408
Sau3AI	GATC	1 cut(s)	159
ScaI	AGTACT	1 cut(s)	334
ScrFI	CCNGG	1 cut(s)	225
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	7 cut(s)	46, 88, 111, 118, 246, 261, 431
SfaNI	GCATC	1 cut(s)	419
SpeI	ACTAGT	1 cut(s)	335
Sse9I	AATT	1 cut(s)	232
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	3 cut(s)	122, 336, 430
StyD4I	CCNGG	1 cut(s)	223
StyI	CCWWGG	1 cut(s)	86
TaaI	ACNGT	1 cut(s)	13
TaqI	TCGA	1 cut(s)	47
TasI	AATT	1 cut(s)	232
TatI	WGTACW	1 cut(s)	332
TfiI	GAWTC	2 cut(s)	310, 350
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	2 cut(s)	16, 208
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	2 cut(s)	198, 407
Tsp45I	GTSAC	1 cut(s)	124
TspGWI	ACGGA	2 cut(s)	65, 204
TspRI	CASTG	2 cut(s)	16, 208
XapI	RAATTY	1 cut(s)	232
XcmI	CCANNNNNNNNNTGG	1 cut(s)	214
XspI	CTAG	3 cut(s)	122, 336, 430
ZrmI	AGTACT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.