Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0008129

Physical Location & Seq

Genomic Coordinates Reverse (-)

37473456 .. 37473887

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG171300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGAGAACCACTATAACGGCTACTATTTCACCAACAAAACTACCTTCGATGAAAGGACCACCGGACTTGGCTCCGCCGGTTTCACCTTTGCACTCTCCGATCCCATACCTTTTAGGCGGTCTAGTTACAATGGCTATTCTTGTTGTTTGTGCTCTCTTGATCTTGGCTTGCTCATTTTGGAAGAGACATAAAGAAGACAGCAGTGCAGACAGAGATTTGGAGTCGGGTAGTGATTCTGTGAAGGTGTTTAAAGACAAGGTTTTGGTTATAATGGCCGGAAATGAGAACTCTACTTACTTGGCCACCCCGATTCCGGTTTGCCCTACTAAAAGTACTAGTTTTGAAGAGGAATTAGAGAAGATAGAAGGAGATGATAAGGAAGAGAACTGTGAGAAATTGAAAGAGGCAGCATCGTCAACACCAATGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006521 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0006868 GO:0008150 GO:0009987 GO:0010565 GO:0010585 GO:0015711 GO:0015804 GO:0015849 GO:0016020 GO:0016021 GO:0019222 GO:0031224 GO:0031323 GO:0032879 GO:0032890 GO:0032940 GO:0033238 GO:0034762 GO:0034765 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044070 GO:0044424 GO:0044425 GO:0044464 GO:0046717 GO:0046903 GO:0046942 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051179 GO:0051234 GO:0051952 GO:0051955 GO:0062012 GO:0065007 GO:0071702 GO:0071705 GO:0080090 GO:0080143 GO:1903789 GO:1903959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

15.45

Weight (kDa)

5.04

Isoelectric Point (pI)

53.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008129)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g37350
rosa_chinensis	RchiOBHm_Chr4g0410191 RchiOBHm_Chr5g0067181 RchiOBHm_Chr7g0208061
rosa_laevigata	RLG00000003257 RLG00000008449
rosa_multiflora	Rmu_co8475945.1_g000001 Rmu_sc0000365.1_g000018
rosa_roxburghii	Rroxscaffold_3G00250830 Rroxscaffold_5G00354970
rosa_rugosa	Rorug05G0382500 Rorug07G0101100
rosa_samantha	Rh4CG171300 Rh5AG442300 Rh5BG459200 Rh5CG481400 Rh5DG474300 Rh7AG234700 Rh7BG230700 Rh7CG250400 Rh7DG241200
rosa_wichuraiana	Rw4G013250 Rw5G041320 Rw7G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	269
AciI	CCGC	2 cut(s)	74, 117
AclWI	GGATC	1 cut(s)	94
AcoI	YGGCCR	2 cut(s)	273, 300
AfaI	GTAC	1 cut(s)	334
AfiI	CCNNNNNNNGG	1 cut(s)	313
AgsI	TTSAA	2 cut(s)	344, 400
AhlI	ACTAGT	1 cut(s)	335
AluBI	AGCT	1 cut(s)	429
AluI	AGCT	1 cut(s)	429
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	1 cut(s)	178
AlwI	GGATC	1 cut(s)	94
AoxI	GGCC	2 cut(s)	273, 300
ApeKI	GCWGC	1 cut(s)	407
AspS9I	GGNCC	1 cut(s)	56
AsuHPI	GGTGA	2 cut(s)	21, 75
AvaII	GGWCC	1 cut(s)	56
BalI	TGGCCA	1 cut(s)	302
BbsI	GAAGAC	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	1 cut(s)	419
BceAI	ACGGC	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	178
BcuI	ACTAGT	1 cut(s)	335
BfaI	CTAG	3 cut(s)	122, 336, 430
BisI	GCNGC	1 cut(s)	408
BlsI	GCNGC	1 cut(s)	409
BmcAI	AGTACT	1 cut(s)	334
Bme18I	GGWCC	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	1 cut(s)	72
BmsI	GCATC	1 cut(s)	419
BpiI	GAAGAC	1 cut(s)	201
BsaWI	WCCGGW	2 cut(s)	61, 313
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
Bse118I	RCCGGY	1 cut(s)	76
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseXI	GCAGC	1 cut(s)	419
BsgI	GTGCAG	1 cut(s)	225
BshFI	GGCC	2 cut(s)	275, 302
BsiHKAI	GWGCWC	1 cut(s)	154
BsiSI	CCGG	4 cut(s)	62, 77, 276, 314
BslI	CCNNNNNNNGG	1 cut(s)	313
BsmAI	GTCTC	1 cut(s)	178
BsnI	GGCC	2 cut(s)	275, 302
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	2 cut(s)	99, 159
BspACI	CCGC	2 cut(s)	74, 117
BspANI	GGCC	2 cut(s)	275, 302
BspLI	GGNNCC	1 cut(s)	72
BspPI	GGATC	1 cut(s)	94
BsrFI	RCCGGY	1 cut(s)	76
BssAI	RCCGGY	1 cut(s)	76
BssMI	GATC	2 cut(s)	99, 159
Bst4CI	ACNGT	1 cut(s)	389
Bst6I	CTCTTC	3 cut(s)	176, 339, 375
BstC8I	GCNNGC	1 cut(s)	169
BstKTI	GATC	2 cut(s)	102, 162
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	2 cut(s)	99, 159
BstV1I	GCAGC	1 cut(s)	419
BstV2I	GAAGAC	1 cut(s)	201
BsuRI	GGCC	2 cut(s)	275, 302
BtsI	GCAGTG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	208
Cac8I	GCNNGC	1 cut(s)	169
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	333
CspCI	CAANNNNNGTGG	2 cut(s)	48, 83
CviJI	RGCY	7 cut(s)	20, 71, 134, 167, 275, 302, 429
CviKI_1	RGCY	7 cut(s)	20, 71, 134, 167, 275, 302, 429
CviQI	GTAC	1 cut(s)	333
DpnI	GATC	2 cut(s)	101, 161
DpnII	GATC	2 cut(s)	99, 159
DraI	TTTAAA	1 cut(s)	250
EaeI	YGGCCR	2 cut(s)	273, 300
Eam1104I	CTCTTC	3 cut(s)	176, 339, 375
EarI	CTCTTC	3 cut(s)	176, 339, 375
EciI	GGCGGA	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	56
FaiI	YATR	4 cut(s)	14, 106, 189, 269
Fnu4HI	GCNGC	1 cut(s)	408
Fsp4HI	GCNGC	1 cut(s)	408
FspBI	CTAG	3 cut(s)	122, 336, 430
GluI	GCNGC	1 cut(s)	408
HaeIII	GGCC	2 cut(s)	275, 302
HapII	CCGG	4 cut(s)	62, 77, 276, 314
HincII	GTYRAC	1 cut(s)	417
HindII	GTYRAC	1 cut(s)	417
HinfI	GANTC	3 cut(s)	221, 233, 310
HpaII	CCGG	4 cut(s)	62, 77, 276, 314
HphI	GGTGA	2 cut(s)	21, 75
Hpy166II	GTNNAC	1 cut(s)	417
Hpy188I	TCNGA	1 cut(s)	99
Hpy188III	TCNNGA	1 cut(s)	157
Hpy8I	GTNNAC	1 cut(s)	417
HpyAV	CCTTC	3 cut(s)	54, 235, 359
HpyCH4III	ACNGT	1 cut(s)	389
HpyCH4V	TGCA	2 cut(s)	91, 206
Kzo9I	GATC	2 cut(s)	99, 159
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	4 cut(s)	75, 90, 289, 327
Lsp1109I	GCAGC	1 cut(s)	419
LweI	GCATC	1 cut(s)	419
MaeI	CTAG	3 cut(s)	122, 336, 430
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	2 cut(s)	101, 161
MboI	GATC	2 cut(s)	99, 159
MboII	GAAGA	5 cut(s)	193, 206, 356, 370, 392
MhlI	GDGCHC	1 cut(s)	154
MlsI	TGGCCA	1 cut(s)	302
MluCI	AATT	2 cut(s)	350, 395
MluNI	TGGCCA	1 cut(s)	302
MlyI	GAGTC	1 cut(s)	230
MnlI	CCTC	2 cut(s)	340, 397
Mox20I	TGGCCA	1 cut(s)	302
MscI	TGGCCA	1 cut(s)	302
MseI	TTAA	1 cut(s)	249
Msp20I	TGGCCA	1 cut(s)	302
MspI	CCGG	4 cut(s)	62, 77, 276, 314
NdeII	GATC	2 cut(s)	99, 159
NlaIV	GGNNCC	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	233, 310
PkrI	GCNGC	1 cut(s)	409
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
PsiI	TTATAA	1 cut(s)	269
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	1 cut(s)	56
PsrI	GAACNNNNNNTAC	2 cut(s)	278, 310
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	1 cut(s)	408
Sau3AI	GATC	2 cut(s)	99, 159
Sau96I	GGNCC	1 cut(s)	56
ScaI	AGTACT	1 cut(s)	334
SchI	GAGTC	1 cut(s)	230
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	6 cut(s)	46, 88, 111, 246, 261, 431
SfaNI	GCATC	1 cut(s)	419
SinI	GGWCC	1 cut(s)	56
SpeI	ACTAGT	1 cut(s)	335
Sse9I	AATT	2 cut(s)	350, 395
SsiI	CCGC	2 cut(s)	74, 117
SspMI	CTAG	3 cut(s)	122, 336, 430
TaaI	ACNGT	1 cut(s)	389
TaqI	TCGA	1 cut(s)	47
TasI	AATT	2 cut(s)	350, 395
TatI	WGTACW	1 cut(s)	332
TfiI	GAWTC	2 cut(s)	233, 310
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	1 cut(s)	208
TseI	GCWGC	1 cut(s)	407
TspDTI	ATGAA	1 cut(s)	65
TspRI	CASTG	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	56
XspI	CTAG	3 cut(s)	122, 336, 430
ZrmI	AGTACT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.