Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0008129

Physical Location & Seq

Genomic Coordinates Reverse (-)

33551188 .. 33556398

Gene Structure 5211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00354970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAGAACCACTATAACGGCTACTATTTCACCAACAAAACTACCTTCGATGAAAGGACCACCGGACTTGGCTCCGCCGGTTTCACCTTTGCACTCTCCGATCCCATACCTTTTAGGCGGTCTAGTTACAATGGCTATTCTTGTTGTTTGTGCTCTCTTGATCTTGGCTTGCTCATTTTGGAAGAGACATAAAGAAGACAGCAGTGCAGACGGAGATTTGGAGTCGGGTAGTGATCACTATGGGAAAATCCTTATTAGACGACGCTTTTCACACAACGAAAAAAAATTTCCGTTGTGTGTTGATGAAAATGGCTTCGACAACACGTTTAAAGAACTTACGTCGTATAAGGCTGTTGAAATTCAGAAGTTTTTAGCTAGAAGGTTGTCAAAGAAGATCAAGAAGGTTGAAAGAAGGAATCGAGAGAAGATAGAAGGAGATGATAAGGAAGAGAACTGTGAGAAATTGAAAGAGGCAGCATCGTCAACACCAATGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006521 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0006868 GO:0008150 GO:0009987 GO:0010565 GO:0010585 GO:0015711 GO:0015804 GO:0015849 GO:0016020 GO:0016021 GO:0019222 GO:0031224 GO:0031323 GO:0032879 GO:0032890 GO:0032940 GO:0033238 GO:0034762 GO:0034765 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044070 GO:0044424 GO:0044425 GO:0044464 GO:0046717 GO:0046903 GO:0046942 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051179 GO:0051234 GO:0051952 GO:0051955 GO:0062012 GO:0065007 GO:0071702 GO:0071705 GO:0080090 GO:0080143 GO:1903789 GO:1903959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

165

Amino Acids

18.55

Weight (kDa)

9.16

Isoelectric Point (pI)

60.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008129)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g37350
rosa_chinensis	RchiOBHm_Chr4g0410191 RchiOBHm_Chr5g0067181 RchiOBHm_Chr7g0208061
rosa_laevigata	RLG00000003257 RLG00000008449
rosa_multiflora	Rmu_co8475945.1_g000001 Rmu_sc0000365.1_g000018
rosa_roxburghii	Rroxscaffold_3G00250830 Rroxscaffold_5G00354970
rosa_rugosa	Rorug05G0382500 Rorug07G0101100
rosa_samantha	Rh4CG171300 Rh5AG442300 Rh5BG459200 Rh5CG481400 Rh5DG474300 Rh7AG234700 Rh7BG230700 Rh7CG250400 Rh7DG241200
rosa_wichuraiana	Rw4G013250 Rw5G041320 Rw7G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	74, 117
AclWI	GGATC	1 cut(s)	94
AcsI	RAATTY	2 cut(s)	284, 357
AflIII	ACRYGT	1 cut(s)	321
AgsI	TTSAA	3 cut(s)	356, 407, 466
AluBI	AGCT	2 cut(s)	374, 495
AluI	AGCT	2 cut(s)	374, 495
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	1 cut(s)	178
AlwI	GGATC	1 cut(s)	94
ApeKI	GCWGC	1 cut(s)	473
ApoI	RAATTY	2 cut(s)	284, 357
AspS9I	GGNCC	1 cut(s)	56
AsuHPI	GGTGA	2 cut(s)	21, 75
AvaII	GGWCC	1 cut(s)	56
BbsI	GAAGAC	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	1 cut(s)	485
BceAI	ACGGC	1 cut(s)	33
BclI	TGATCA	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	178
BfaI	CTAG	3 cut(s)	122, 375, 496
BisI	GCNGC	1 cut(s)	474
BlsI	GCNGC	1 cut(s)	475
Bme18I	GGWCC	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	1 cut(s)	72
BmsI	GCATC	1 cut(s)	485
BpiI	GAAGAC	1 cut(s)	201
BsaWI	WCCGGW	1 cut(s)	61
Bse118I	RCCGGY	1 cut(s)	76
BseXI	GCAGC	1 cut(s)	485
BsgI	GTGCAG	1 cut(s)	225
BsiHKAI	GWGCWC	1 cut(s)	154
BsiSI	CCGG	2 cut(s)	62, 77
BsmAI	GTCTC	1 cut(s)	178
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	4 cut(s)	99, 159, 232, 393
BspACI	CCGC	2 cut(s)	74, 117
BspLI	GGNNCC	1 cut(s)	72
BspPI	GGATC	1 cut(s)	94
BsrFI	RCCGGY	1 cut(s)	76
BssAI	RCCGGY	1 cut(s)	76
BssMI	GATC	4 cut(s)	99, 159, 232, 393
Bst4CI	ACNGT	1 cut(s)	455
Bst6I	CTCTTC	2 cut(s)	176, 441
BstC8I	GCNNGC	1 cut(s)	169
BstKTI	GATC	4 cut(s)	102, 162, 235, 396
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	4 cut(s)	99, 159, 232, 393
BstV1I	GCAGC	1 cut(s)	485
BstV2I	GAAGAC	1 cut(s)	201
BtsI	GCAGTG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	208
Cac8I	GCNNGC	1 cut(s)	169
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	1 cut(s)	56
CseI	GACGC	1 cut(s)	270
CspCI	CAANNNNNGTGG	2 cut(s)	48, 83
CviJI	RGCY	8 cut(s)	20, 71, 134, 167, 312, 350, 374, 495
CviKI_1	RGCY	8 cut(s)	20, 71, 134, 167, 312, 350, 374, 495
DpnI	GATC	4 cut(s)	101, 161, 234, 395
DpnII	GATC	4 cut(s)	99, 159, 232, 393
DraI	TTTAAA	1 cut(s)	328
Eam1104I	CTCTTC	2 cut(s)	176, 441
EarI	CTCTTC	2 cut(s)	176, 441
EciI	GGCGGA	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	56
FaiI	YATR	5 cut(s)	14, 106, 189, 240, 345
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	1 cut(s)	474
Fsp4HI	GCNGC	1 cut(s)	474
FspBI	CTAG	3 cut(s)	122, 375, 496
GluI	GCNGC	1 cut(s)	474
HapII	CCGG	2 cut(s)	62, 77
HgaI	GACGC	1 cut(s)	270
HincII	GTYRAC	1 cut(s)	483
HindII	GTYRAC	1 cut(s)	483
HinfI	GANTC	2 cut(s)	221, 415
HpaII	CCGG	2 cut(s)	62, 77
HphI	GGTGA	2 cut(s)	21, 75
Hpy166II	GTNNAC	1 cut(s)	483
Hpy188I	TCNGA	2 cut(s)	99, 363
Hpy188III	TCNNGA	3 cut(s)	157, 397, 419
Hpy8I	GTNNAC	1 cut(s)	483
Hpy99I	CGWCG	2 cut(s)	264, 343
HpyAV	CCTTC	5 cut(s)	54, 372, 394, 405, 425
HpyCH4III	ACNGT	1 cut(s)	455
HpyCH4IV	ACGT	2 cut(s)	323, 338
HpyCH4V	TGCA	2 cut(s)	91, 206
HpySE526I	ACGT	2 cut(s)	323, 338
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	4 cut(s)	99, 159, 232, 393
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	2 cut(s)	75, 90
Lsp1109I	GCAGC	1 cut(s)	485
LweI	GCATC	1 cut(s)	485
MaeI	CTAG	3 cut(s)	122, 375, 496
MaeII	ACGT	2 cut(s)	323, 338
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	4 cut(s)	101, 161, 234, 395
MboI	GATC	4 cut(s)	99, 159, 232, 393
MboII	GAAGA	5 cut(s)	193, 206, 403, 436, 458
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	3 cut(s)	284, 357, 461
MlyI	GAGTC	1 cut(s)	230
MnlI	CCTC	1 cut(s)	463
MseI	TTAA	1 cut(s)	327
MspI	CCGG	2 cut(s)	62, 77
NdeII	GATC	4 cut(s)	99, 159, 232, 393
NlaIV	GGNNCC	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	415
PkrI	GCNGC	1 cut(s)	475
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	1 cut(s)	474
Sau3AI	GATC	4 cut(s)	99, 159, 232, 393
Sau96I	GGNCC	1 cut(s)	56
SchI	GAGTC	1 cut(s)	230
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	9 cut(s)	46, 88, 111, 326, 341, 376, 383, 405, 497
SfaNI	GCATC	1 cut(s)	485
SinI	GGWCC	1 cut(s)	56
Sse9I	AATT	3 cut(s)	284, 357, 461
SsiI	CCGC	2 cut(s)	74, 117
SspMI	CTAG	3 cut(s)	122, 375, 496
TaaI	ACNGT	1 cut(s)	455
TaiI	ACGT	2 cut(s)	326, 341
TaqI	TCGA	3 cut(s)	47, 315, 418
TasI	AATT	3 cut(s)	284, 357, 461
TfiI	GAWTC	1 cut(s)	415
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TscAI	CASTG	1 cut(s)	208
TseI	GCWGC	1 cut(s)	473
TspDTI	ATGAA	2 cut(s)	65, 318
TspGWI	ACGGA	2 cut(s)	225, 279
TspRI	CASTG	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	56
XapI	RAATTY	2 cut(s)	284, 357
XspI	CTAG	3 cut(s)	122, 375, 496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.