Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0008129

Physical Location & Seq

Genomic Coordinates Reverse (-)

20192171 .. 20197390

Gene Structure 5220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG230700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGGTTACCAGAAGAGTTTAGGCCGGTGTTTGTTGGTGAATCTGGTCTCCAGTCTCCAACTGGCCGGTACCGGCACACATCGACACGGAGGAGGCAGCAGTGCCAACAGAGATTTGGAGCCAGGTGGGGATTCTGTGAAGGTGTTTAAAGACAAGGTTTTGGTTATAATGGCCGGAAATGAGAACCCTACTTACTTGGCCACCCCGATTCCGGTTTGCCATACTAAAAGTACTAGTTTTGAAGAGGAATCAGAGAAGATAGAAGGAGATGATAAGGAAGAGAACTGTGAGAAATCAAAAGAGGCAGCATCATCAACACCAGTGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006521 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0006868 GO:0008150 GO:0009987 GO:0010565 GO:0010585 GO:0015711 GO:0015804 GO:0015849 GO:0016020 GO:0016021 GO:0019222 GO:0031224 GO:0031323 GO:0032879 GO:0032890 GO:0032940 GO:0033238 GO:0034762 GO:0034765 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044070 GO:0044424 GO:0044425 GO:0044464 GO:0046717 GO:0046903 GO:0046942 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051179 GO:0051234 GO:0051952 GO:0051955 GO:0062012 GO:0065007 GO:0071702 GO:0071705 GO:0080090 GO:0080143 GO:1903789 GO:1903959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

109

Amino Acids

11.6

Weight (kDa)

5.32

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008129)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g37350
rosa_chinensis	RchiOBHm_Chr4g0410191 RchiOBHm_Chr5g0067181 RchiOBHm_Chr7g0208061
rosa_laevigata	RLG00000003257 RLG00000008449
rosa_multiflora	Rmu_co8475945.1_g000001 Rmu_sc0000365.1_g000018
rosa_roxburghii	Rroxscaffold_3G00250830 Rroxscaffold_5G00354970
rosa_rugosa	Rorug05G0382500 Rorug07G0101100
rosa_samantha	Rh4CG171300 Rh5AG442300 Rh5BG459200 Rh5CG481400 Rh5DG474300 Rh7AG234700 Rh7BG230700 Rh7CG250400 Rh7DG241200
rosa_wichuraiana	Rw4G013250 Rw5G041320 Rw7G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	167
Acc65I	GGTACC	1 cut(s)	68
AccB1I	GGYRCC	1 cut(s)	68
AcoI	YGGCCR	3 cut(s)	63, 171, 198
AfaI	GTAC	2 cut(s)	70, 232
AfiI	CCNNNNNNNGG	1 cut(s)	211
AgsI	TTSAA	1 cut(s)	242
AhlI	ACTAGT	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	1 cut(s)	327
AluI	AGCT	1 cut(s)	327
Alw26I	GTCTC	2 cut(s)	52, 59
AoxI	GGCC	4 cut(s)	22, 63, 171, 198
ApeKI	GCWGC	2 cut(s)	96, 305
Asp718I	GGTACC	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	49
BalI	TGGCCA	1 cut(s)	200
BanI	GGYRCC	1 cut(s)	68
BbvI	GCAGC	2 cut(s)	108, 317
BciT130I	CCWGG	1 cut(s)	123
BcoDI	GTCTC	2 cut(s)	52, 59
BcuI	ACTAGT	1 cut(s)	233
BfaI	CTAG	2 cut(s)	234, 328
BisI	GCNGC	2 cut(s)	97, 306
BlsI	GCNGC	2 cut(s)	98, 307
BmcAI	AGTACT	1 cut(s)	232
Bme1390I	CCNGG	1 cut(s)	123
BmiI	GGNNCC	2 cut(s)	70, 120
BmrFI	CCNGG	1 cut(s)	123
BmsI	GCATC	1 cut(s)	317
BpmI	CTGGAG	1 cut(s)	34
BsaI	GGTCTC	1 cut(s)	52
BsaWI	WCCGGW	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse118I	RCCGGY	3 cut(s)	24, 65, 71
Bse1I	ACTGG	3 cut(s)	51, 66, 320
BseBI	CCWGG	1 cut(s)	123
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseNI	ACTGG	3 cut(s)	51, 66, 320
BseRI	GAGGAG	1 cut(s)	105
BseXI	GCAGC	2 cut(s)	108, 317
BshFI	GGCC	4 cut(s)	24, 65, 173, 200
BshNI	GGYRCC	1 cut(s)	68
BsiSI	CCGG	5 cut(s)	25, 66, 72, 174, 212
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	2 cut(s)	52, 59
BsnI	GGCC	4 cut(s)	24, 65, 173, 200
Bso31I	GGTCTC	1 cut(s)	52
BspANI	GGCC	4 cut(s)	24, 65, 173, 200
BspLI	GGNNCC	2 cut(s)	70, 120
BspT107I	GGYRCC	1 cut(s)	68
BspTNI	GGTCTC	1 cut(s)	52
BsrFI	RCCGGY	3 cut(s)	24, 65, 71
BsrI	ACTGG	3 cut(s)	51, 66, 320
BssAI	RCCGGY	3 cut(s)	24, 65, 71
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	287
Bst6I	CTCTTC	3 cut(s)	8, 237, 273
BstEII	GGTNACC	1 cut(s)	5
BstMAI	GTCTC	2 cut(s)	52, 59
BstNI	CCWGG	1 cut(s)	123
BstPI	GGTNACC	1 cut(s)	5
BstSCI	CCNGG	1 cut(s)	121
BstV1I	GCAGC	2 cut(s)	108, 317
BsuRI	GGCC	4 cut(s)	24, 65, 173, 200
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	2 cut(s)	106, 327
Cfr10I	RCCGGY	3 cut(s)	24, 65, 71
Csp6I	GTAC	2 cut(s)	69, 231
CviJI	RGCY	6 cut(s)	24, 65, 121, 173, 200, 327
CviKI_1	RGCY	6 cut(s)	24, 65, 121, 173, 200, 327
CviQI	GTAC	2 cut(s)	69, 231
DraI	TTTAAA	1 cut(s)	148
EaeI	YGGCCR	3 cut(s)	63, 171, 198
Eam1104I	CTCTTC	3 cut(s)	8, 237, 273
EarI	CTCTTC	3 cut(s)	8, 237, 273
Eco31I	GGTCTC	1 cut(s)	52
Eco91I	GGTNACC	1 cut(s)	5
EcoO65I	GGTNACC	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	121
FaiI	YATR	2 cut(s)	167, 222
Fnu4HI	GCNGC	2 cut(s)	97, 306
Fsp4HI	GCNGC	2 cut(s)	97, 306
FspBI	CTAG	2 cut(s)	234, 328
GluI	GCNGC	2 cut(s)	97, 306
GsuI	CTGGAG	1 cut(s)	34
HaeIII	GGCC	4 cut(s)	24, 65, 173, 200
HapII	CCGG	5 cut(s)	25, 66, 72, 174, 212
HinfI	GANTC	4 cut(s)	40, 131, 208, 248
HpaII	CCGG	5 cut(s)	25, 66, 72, 174, 212
HphI	GGTGA	1 cut(s)	49
Hpy188I	TCNGA	1 cut(s)	253
HpyAV	CCTTC	2 cut(s)	133, 257
HpyCH4III	ACNGT	1 cut(s)	287
KpnI	GGTACC	1 cut(s)	72
LmnI	GCTCC	1 cut(s)	118
Lsp1109I	GCAGC	2 cut(s)	108, 317
LweI	GCATC	1 cut(s)	317
MaeI	CTAG	2 cut(s)	234, 328
MaeIII	GTNAC	1 cut(s)	5
MboII	GAAGA	4 cut(s)	25, 254, 268, 290
MlsI	TGGCCA	1 cut(s)	200
MluNI	TGGCCA	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	4 cut(s)	83, 86, 238, 295
Mox20I	TGGCCA	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	1 cut(s)	147
Msp20I	TGGCCA	1 cut(s)	200
MspI	CCGG	5 cut(s)	25, 66, 72, 174, 212
MspR9I	CCNGG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	123
NlaIV	GGNNCC	2 cut(s)	70, 120
PfeI	GAWTC	4 cut(s)	40, 131, 208, 248
PkrI	GCNGC	2 cut(s)	98, 307
PsiI	TTATAA	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	121
PspEI	GGTNACC	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	121
PspN4I	GGNNCC	2 cut(s)	70, 120
PsrI	GAACNNNNNNTAC	2 cut(s)	176, 208
RsaI	GTAC	2 cut(s)	70, 232
RsaNI	GTAC	2 cut(s)	69, 231
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	2 cut(s)	97, 306
ScaI	AGTACT	1 cut(s)	232
ScrFI	CCNGG	1 cut(s)	123
SetI	ASST	4 cut(s)	127, 144, 159, 329
SfaNI	GCATC	1 cut(s)	317
SpeI	ACTAGT	1 cut(s)	233
SspMI	CTAG	2 cut(s)	234, 328
StyD4I	CCNGG	1 cut(s)	121
TaaI	ACNGT	1 cut(s)	287
TaqI	TCGA	1 cut(s)	82
TatI	WGTACW	1 cut(s)	230
TfiI	GAWTC	4 cut(s)	40, 131, 208, 248
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	2 cut(s)	106, 327
TseI	GCWGC	2 cut(s)	96, 305
TspGWI	ACGGA	1 cut(s)	102
TspRI	CASTG	2 cut(s)	106, 327
XcmI	CCANNNNNNNNNTGG	2 cut(s)	58, 112
XspI	CTAG	2 cut(s)	234, 328
ZrmI	AGTACT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.