RchiOBHm_Chr5g0067181

Protein GLUTAMINE DUMPER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0008129
Physical Location & Seq
Reverse (-)
73343303 .. 73343689
387 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34291

Sequence Viewer

Length: 387 bp
ATGGCTACTATTTCACCAACAAAACTACCTTCGACGGAAGCACCACCGAACATGGTTCCTCCGGTTTCACCTTGGCACTATCCGATTCCATACCTCTTAGGCGGCCTATTGATGATGGCTATTCTTGTTGTTTGTGCTCTCTTGATCTTGGATTGCTCGTTTTGGAAGCGACACGGAGGAGGCAGCAATGCCAACAGAGATTTGGAGCCAGGTGGGGAGTCTGTGAAGGTGTTTAAAGACAAGGTTTTGGTTATAATGGCCGGAAATGAGAACCCTACTTACTTGGCCACCGCGATTCCAGTTTGCCTTACTAAAAGTACTAGTTTTGAAGAGGAATTAGAGAAGATAGAGGGAGATGATAAGGAAGAGAACTGTGAGAAATCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

13.95

Weight (kDa)

4.85

Isoelectric Point (pI)

57.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 254
AccII CGCG 1 cut(s) 293
AciI CCGC 2 cut(s) 102, 291
AcoI YGGCCR 2 cut(s) 258, 285
AfaI GTAC 1 cut(s) 319
AgsI TTSAA 1 cut(s) 329
AhlI ACTAGT 1 cut(s) 320
AjnI CCWGG 1 cut(s) 208
Alw21I GWGCWC 1 cut(s) 139
AoxI GGCC 3 cut(s) 103, 258, 285
ApeKI GCWGC 1 cut(s) 183
AsuHPI GGTGA 2 cut(s) 6, 60
BalI TGGCCA 1 cut(s) 287
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 1 cut(s) 195
BccI CCATC 1 cut(s) 109
BciT130I CCWGG 1 cut(s) 210
BcuI ACTAGT 1 cut(s) 320
BfaI CTAG 1 cut(s) 321
BisI GCNGC 2 cut(s) 103, 184
BlsI GCNGC 2 cut(s) 104, 185
BmcAI AGTACT 1 cut(s) 319
Bme1390I CCNGG 1 cut(s) 210
BmiI GGNNCC 2 cut(s) 57, 207
BmrFI CCNGG 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 71
BsaWI WCCGGW 1 cut(s) 61
Bse1I ACTGG 1 cut(s) 299
Bse3DI GCAATG 1 cut(s) 193
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 71
BseMI GCAATG 1 cut(s) 193
BseNI ACTGG 1 cut(s) 299
BseRI GAGGAG 1 cut(s) 192
BseXI GCAGC 1 cut(s) 195
Bsh1236I CGCG 1 cut(s) 293
BshFI GGCC 3 cut(s) 105, 260, 287
BsiHKAI GWGCWC 1 cut(s) 139
BsiSI CCGG 2 cut(s) 62, 261
BsnI GGCC 3 cut(s) 105, 260, 287
Bsp1286I GDGCHC 1 cut(s) 139
Bsp143I GATC 1 cut(s) 144
BspACI CCGC 2 cut(s) 102, 291
BspANI GGCC 3 cut(s) 105, 260, 287
BspFNI CGCG 1 cut(s) 293
BspLI GGNNCC 2 cut(s) 57, 207
BsrDI GCAATG 1 cut(s) 193
BsrI ACTGG 1 cut(s) 299
BssECI CCNNGG 1 cut(s) 71
BssMI GATC 1 cut(s) 144
BssT1I CCWWGG 1 cut(s) 71
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 1 cut(s) 374
Bst6I CTCTTC 2 cut(s) 324, 360
BstDEI CTNAG 1 cut(s) 97
BstFNI CGCG 1 cut(s) 293
BstKTI GATC 1 cut(s) 147
BstMBI GATC 1 cut(s) 144
BstNI CCWGG 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 208
BstUI CGCG 1 cut(s) 293
BstV1I GCAGC 1 cut(s) 195
BsuRI GGCC 3 cut(s) 105, 260, 287
Csp6I GTAC 1 cut(s) 318
CviAII CATG 1 cut(s) 52
CviJI RGCY 6 cut(s) 5, 105, 119, 208, 260, 287
CviKI_1 RGCY 6 cut(s) 5, 105, 119, 208, 260, 287
CviQI GTAC 1 cut(s) 318
DdeI CTNAG 1 cut(s) 97
DpnI GATC 1 cut(s) 146
DpnII GATC 1 cut(s) 144
DraI TTTAAA 1 cut(s) 235
EaeI YGGCCR 2 cut(s) 258, 285
Eam1104I CTCTTC 2 cut(s) 324, 360
EarI CTCTTC 2 cut(s) 324, 360
Eco130I CCWWGG 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 71
FaeI CATG 1 cut(s) 55
FaiI YATR 3 cut(s) 53, 91, 254
FatI CATG 1 cut(s) 51
Fnu4HI GCNGC 2 cut(s) 103, 184
Fsp4HI GCNGC 2 cut(s) 103, 184
FspBI CTAG 1 cut(s) 321
GluI GCNGC 2 cut(s) 103, 184
HaeIII GGCC 3 cut(s) 105, 260, 287
HapII CCGG 2 cut(s) 62, 261
Hin1II CATG 1 cut(s) 55
HinfI GANTC 3 cut(s) 85, 218, 295
HpaII CCGG 2 cut(s) 62, 261
HphI GGTGA 2 cut(s) 6, 60
Hpy188I TCNGA 1 cut(s) 84
Hpy188III TCNNGA 1 cut(s) 142
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 2 cut(s) 39, 220
HpyCH4III ACNGT 1 cut(s) 374
HpyF3I CTNAG 1 cut(s) 97
Hsp92II CATG 1 cut(s) 55
Kzo9I GATC 1 cut(s) 144
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 5 cut(s) 75, 195, 222, 274, 312
Lsp1109I GCAGC 1 cut(s) 195
MaeI CTAG 1 cut(s) 321
MalI GATC 1 cut(s) 146
MboI GATC 1 cut(s) 144
MboII GAAGA 3 cut(s) 341, 355, 377
MhlI GDGCHC 1 cut(s) 139
MlsI TGGCCA 1 cut(s) 287
MluCI AATT 1 cut(s) 335
MluNI TGGCCA 1 cut(s) 287
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 6 cut(s) 69, 104, 170, 173, 325, 343
Mox20I TGGCCA 1 cut(s) 287
MscI TGGCCA 1 cut(s) 287
MseI TTAA 1 cut(s) 234
Msp20I TGGCCA 1 cut(s) 287
MspI CCGG 2 cut(s) 62, 261
MspR9I CCNGG 1 cut(s) 210
MvaI CCWGG 1 cut(s) 210
MvnI CGCG 1 cut(s) 293
NdeII GATC 1 cut(s) 144
NlaIII CATG 1 cut(s) 55
NlaIV GGNNCC 2 cut(s) 57, 207
PfeI GAWTC 2 cut(s) 85, 295
PkrI GCNGC 2 cut(s) 104, 185
PleI GAGTC 1 cut(s) 226
PpsI GAGTC 1 cut(s) 226
PsiI TTATAA 1 cut(s) 254
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PspN4I GGNNCC 2 cut(s) 57, 207
PsrI GAACNNNNNNTAC 2 cut(s) 263, 295
RsaI GTAC 1 cut(s) 319
RsaNI GTAC 1 cut(s) 318
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 2 cut(s) 103, 184
Sau3AI GATC 1 cut(s) 144
ScaI AGTACT 1 cut(s) 319
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 210
SduI GDGCHC 1 cut(s) 139
SetI ASST 6 cut(s) 31, 73, 96, 214, 231, 246
SpeI ACTAGT 1 cut(s) 320
Sse9I AATT 1 cut(s) 335
SsiI CCGC 2 cut(s) 102, 291
SspMI CTAG 1 cut(s) 321
StyD4I CCNGG 1 cut(s) 208
StyI CCWWGG 1 cut(s) 71
TaaI ACNGT 1 cut(s) 374
TaqI TCGA 1 cut(s) 32
TasI AATT 1 cut(s) 335
TatI WGTACW 1 cut(s) 317
TauI GCSGC 1 cut(s) 105
TfiI GAWTC 2 cut(s) 85, 295
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TseI GCWGC 1 cut(s) 183
TspGWI ACGGA 2 cut(s) 50, 189
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
XspI CTAG 1 cut(s) 321
ZrmI AGTACT 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.